mRNA_L-elsbetiae_contig20506.6181.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20506.6181.1
Unique NamemRNA_L-elsbetiae_contig20506.6181.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20506.6181.1 vs. uniprot
Match: D7FX95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX95_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 7.000e-54
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    1 QYHTPLAVGTLLGLTTMMSQFMFVLFSVFLALAEYADAGSLARGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTSSSNEGEGEWQDEPGTE-MAPGTPV 309
            +YHTPLAVGTLLGLTTMMSQFMFVLF+VFLALAEYAD   LA GDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGT+SSN+ EGEWQDEPGT+ MAPGTPV
Sbjct:   84 KYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTASSND-EGEWQDEPGTDGMAPGTPV 186
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BLAST of mRNA_L-elsbetiae_contig20506.6181.1 vs. uniprot
Match: A0A835Z9F7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.240e-17
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 QYHTPLAVGTLLGLTTMMSQFMFVLFSVFLALAEYADAGSLARGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNT 228
            +YHTPLAVG LLGLT+M+SQ +FVLF+VFLAL +  ++G+    D  MA F F LF L+ LFS VL ++R TV+ T
Sbjct:   87 KYHTPLAVGLLLGLTSMLSQLLFVLFAVFLALGQ--ESGTHQDSDHAMAAFMFILFFLFLLFSIVLAKFRMTVIET 160
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BLAST of mRNA_L-elsbetiae_contig20506.6181.1 vs. uniprot
Match: W7TD56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD56_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.910e-7
Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   10 TPLAVGTLLGLTTMMSQFMFVLFSVFLALAEYADAGSLARGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTSSSN 249
            TP+A G  LG   M SQ   +LF++F+ LA+ +      R +  MAVF+FFLF+LY +FS  L  +R  V++     + N
Sbjct:  107 TPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDAPAPAEN 186
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BLAST of mRNA_L-elsbetiae_contig20506.6181.1 vs. uniprot
Match: A0A6A3XBJ2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XBJ2_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.670e-5
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 QYHTPLAVGTLLGLTTMMSQFMFVLFSVFLALAEYADAGSLARGDRTM--------AVFSFFLFLLYGLFSFVLGRYRTTVM 222
            ++ TPLAVG L+G+  MMS  MF L S+  A A Y      A+GD           +VFSFF+F+LY +F+ VL R+R  V+
Sbjct:  136 KHQTPLAVGFLIGVVLMMSLQMFSL-SIIFAGAAYLARIERAKGDEHTNVHSNEAGSVFSFFMFILYAVFTIVLVRHRNIVI 216
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BLAST of mRNA_L-elsbetiae_contig20506.6181.1 vs. uniprot
Match: A0A6A3TJI2_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TJI2_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.800e-5
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 QYHTPLAVGTLLGLTTMMSQFMFVLFSVFLALAEYADAGSLARGDRTM--------AVFSFFLFLLYGLFSFVLGRYRTTVM 222
            ++ TPLAVG L+G+  MMS  MF L S+  A A Y      A+GD           +VFSFF+F+LY +F+ VL R+R  V+
Sbjct:  153 KHQTPLAVGFLIGVVLMMSLQMFSL-SIIFAGAAYLARIERAKGDEHTNVHSNEAGSVFSFFMFILYAVFTIVLVRHRNIVI 233
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20506.6181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FX95_ECTSI7.000e-5489.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9F7_9STRA8.240e-1756.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TD56_9STRA2.910e-738.75Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A6A3XBJ2_9STRA2.670e-542.68Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6A3TJI2_9STRA2.800e-542.68Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20506contigL-elsbetiae_contig20506:1344..2389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue2.4e-42
Seed eggNOG ortholog2880.D7FX95
Hectar predicted targeting categorysignal peptide
EggNOG OGs2B4VH@1,2S0HS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_004050.1
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.1619377-CDS-L-elsbetiae_contig20506:1343..14781622815846.1619377-CDS-L-elsbetiae_contig20506:1343..1478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20506 1344..1478 -
1691683142.3042922-CDS-L-elsbetiae_contig20506:1343..14781691683142.3042922-CDS-L-elsbetiae_contig20506:1343..1478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20506 1344..1478 -
1622815846.1831799-CDS-L-elsbetiae_contig20506:2212..23891622815846.1831799-CDS-L-elsbetiae_contig20506:2212..2389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20506 2213..2389 -
1691683142.3140893-CDS-L-elsbetiae_contig20506:2212..23891691683142.3140893-CDS-L-elsbetiae_contig20506:2212..2389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20506 2213..2389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20506.6181.1prot_L-elsbetiae_contig20506.6181.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20506 1344..2389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20506.6181.1

>prot_L-elsbetiae_contig20506.6181.1 ID=prot_L-elsbetiae_contig20506.6181.1|Name=mRNA_L-elsbetiae_contig20506.6181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
QYHTPLAVGTLLGLTTMMSQFMFVLFSVFLALAEYADAGSLARGDRTMAV
FSFFLFLLYGLFSFVLGRYRTTVMNTPGTSSSNEGEGEWQDEPGTEMAPG
TPV*
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mRNA from alignment at L-elsbetiae_contig20506:1344..2389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20506.6181.1 ID=mRNA_L-elsbetiae_contig20506.6181.1|Name=mRNA_L-elsbetiae_contig20506.6181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1046bp|location=Sequence derived from alignment at L-elsbetiae_contig20506:1344..2389- (Laminarionema elsbetiae ELsaHSoW15)
CAGTACCACACTCCGTTGGCGGTGGGCACCCTGCTGGGCCTGACGACGAT
GATGTCCCAGTTCATGTTCGTGCTCTTTTCGGTGTTCCTGGCGCTCGCCG
AGTACGCGGACGCGGGGTCGCTGGCGAGGGGGGACCGGACCATGGCCGTC
TTCTCCTTCTTCCTGTTCCTCCTCTACGTGAGTCTTGCCTGCTTGCCTGC
TTGCCTGCTTGCCTGCTTGCCTGCTTGCCTGCTTGCCTGCCTGCCTGCTG
AGGGCCGTTGGTGCTGCTGTCGACGGGTGACGCCGGTGGTGTGTTGTTCC
CGTTTGGGATATGTAGAACGCGGAGGGCTGTCGCAGCTGTGGTTCAAAGA
GTCGGTGTACCAGGCCGGCGTAATTATGGTGTTGTTGTTCGTGTTGCTGT
TCGGCCGAAGCATGGTTTACTCCCGCCACGGTTGGTTGAACCGCGGGCCT
CTCTCAAAAATATATAGGAGTATATAAATATTTTCAGTATTTTTAATTAA
TGCATACAAATGTCGGCAGTCTACGTCCAGTCTGTGAAAAAGTCGTCCCA
GAGGGAACTGTTGTAGGCATGCTAACCCTCCCCTTTTTCCCGTCCAAGGC
ATACTCGCACAAAATCCGTGAAGTATTTTCTCTCCCTTTCTCAGTGTGTG
GGTGGTTTCCCGCTTATTGGAATCTCAAAAGGAGTGGAGAGGGTTAAGGT
AGTGGAACAGGGTGGCCCACCTACCTGCCCACCAACCATCTGTGCCACCA
GCGTGCACGTGTGATAACATTGAACGAATCCCAAAGCGATGGAGCAAAAA
AACGCCGTGGCGACAACAGCTTTGCTCAGAACCGACATCCACCCCTGGCA
CCCCTCCCCCCCCCTCCCCTCCCCCCGCCACCTCGCCGCAATGTCGTTTC
CACCTTCACAGGGCCTTTTCTCTTTTGTGCTGGGCCGCTACCGCACCACC
GTGATGAACACCCCCGGCACGAGCTCGAGCAACGAGGGGGAGGGCGAGTG
GCAGGACGAGCCCGGAACAGAAATGGCCCCGGGAACTCCGGTCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20506:1344..2389-

>mRNA_L-elsbetiae_contig20506.6181.1 ID=mRNA_L-elsbetiae_contig20506.6181.1|Name=mRNA_L-elsbetiae_contig20506.6181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig20506:1344..2389- (Laminarionema elsbetiae ELsaHSoW15)
CAGTACCACACTCCGTTGGCGGTGGGCACCCTGCTGGGCCTGACGACGAT
GATGTCCCAGTTCATGTTCGTGCTCTTTTCGGTGTTCCTGGCGCTCGCCG
AGTACGCGGACGCGGGGTCGCTGGCGAGGGGGGACCGGACCATGGCCGTC
TTCTCCTTCTTCCTGTTCCTCCTCTACCAGTACCACACTCCGTTGGCGGT
GGGCACCCTGCTGGGCCTGACGACGATGATGTCCCAGTTCATGTTCGTGC
TCTTTTCGGTGTTCCTGGCGCTCGCCGAGTACGCGGACGCGGGGTCGCTG
GCGAGGGGGGACCGGACCATGGCCGTCTTCTCCTTCTTCCTGTTCCTCCT
CTACGGCCTTTTCTCTTTTGTGCTGGGCCGCTACCGCACCACCGTGATGA
ACACCCCCGGCACGAGCTCGAGCAACGAGGGGGAGGGCGAGTGGCAGGAC
GAGCCCGGAACAGAAATGGCCCCGGGAACTCCGGTCTAAGGCCTTTTCTC
TTTTGTGCTGGGCCGCTACCGCACCACCGTGATGAACACCCCCGGCACGA
GCTCGAGCAACGAGGGGGAGGGCGAGTGGCAGGACGAGCCCGGAACAGAA
ATGGCCCCGGGAACTCCGGTCTAA
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