mRNA_L-elsbetiae_contig20447.6159.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20447.6159.1
Unique NamemRNA_L-elsbetiae_contig20447.6159.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20447.6159.1 vs. uniprot
Match: D8LJL1_ECTSI (6-phosphogluconate dehydrogenase NAD-binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL1_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.760e-43
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 2 
Query:    2 SRMLDQVLEDLLKVEEAGDDVEILRRSLAPIRTLGKDAAILARAAAESGASASLLGSAQAQVDETIRSGYSDCSFASVATTIEEEFCTAKDKDGD 286
            S+MLDQVL DLLKVEEAGDDVE+LRRSLAPIRTLGKDAAILARAAAESGAS+SLL SAQAQ+DET+RSGYSDCSFASVATTIEEEFC A DK+GD
Sbjct:  234 SQMLDQVLGDLLKVEEAGDDVEVLRRSLAPIRTLGKDAAILARAAAESGASSSLLESAQAQIDETVRSGYSDCSFASVATTIEEEFCEAVDKEGD 328
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BLAST of mRNA_L-elsbetiae_contig20447.6159.1 vs. uniprot
Match: A0A6H5JM96_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM96_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 5.960e-43
Identity = 82/94 (87.23%), Postives = 88/94 (93.62%), Query Frame = 2 
Query:    5 RMLDQVLEDLLKVEEAGDDVEILRRSLAPIRTLGKDAAILARAAAESGASASLLGSAQAQVDETIRSGYSDCSFASVATTIEEEFCTAKDKDGD 286
            RMLDQVL DLLKVEEAGDDVE+LRRSLAPIRTL KDA ILARAAAESGAS+SLL SA+AQ+DET+RSGYSDCSFASVATTIEEEFC A DK+GD
Sbjct:   75 RMLDQVLGDLLKVEEAGDDVEVLRRSLAPIRTLRKDAGILARAAAESGASSSLLESARAQIDETVRSGYSDCSFASVATTIEEEFCDAADKEGD 168
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20447.6159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJL1_ECTSI2.760e-4389.476-phosphogluconate dehydrogenase NAD-binding n=1 T... [more]
A0A6H5JM96_9PHAE5.960e-4387.23Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20447contigL-elsbetiae_contig20447:109..2072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue5.3e-36
Seed eggNOG ortholog2880.D8LJL1
KEGG rclassRC00099
KEGG koko:K00020
KEGG ReactionR05066
KEGG Pathwayko00280,ko01100,map00280,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3hydroxyisobutyrate dehydrogenase
EggNOG OGsCOG2084@1,KOG0409@2759
EC1.1.1.31
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionNADP-dependent 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain
Ec32 orthologEc-17_002410.1
Exons2
Model size730
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20447.6159.1prot_L-elsbetiae_contig20447.6159.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20447 538..2065 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815843.3816783-UTR-L-elsbetiae_contig20447:108..5371622815843.3816783-UTR-L-elsbetiae_contig20447:108..537Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20447 109..537 -
1691683140.2874749-UTR-L-elsbetiae_contig20447:108..5371691683140.2874749-UTR-L-elsbetiae_contig20447:108..537Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20447 109..537 -
1622815843.4260976-UTR-L-elsbetiae_contig20447:2065..20721622815843.4260976-UTR-L-elsbetiae_contig20447:2065..2072Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20447 2066..2072 -
1691683140.3179789-UTR-L-elsbetiae_contig20447:2065..20721691683140.3179789-UTR-L-elsbetiae_contig20447:2065..2072Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20447 2066..2072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815843.3954315-CDS-L-elsbetiae_contig20447:537..6541622815843.3954315-CDS-L-elsbetiae_contig20447:537..654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20447 538..654 -
1691683140.301399-CDS-L-elsbetiae_contig20447:537..6541691683140.301399-CDS-L-elsbetiae_contig20447:537..654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20447 538..654 -
1622815843.4127522-CDS-L-elsbetiae_contig20447:1888..20651622815843.4127522-CDS-L-elsbetiae_contig20447:1888..2065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20447 1889..2065 -
1691683140.310585-CDS-L-elsbetiae_contig20447:1888..20651691683140.310585-CDS-L-elsbetiae_contig20447:1888..2065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20447 1889..2065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20447.6159.1

>prot_L-elsbetiae_contig20447.6159.1 ID=prot_L-elsbetiae_contig20447.6159.1|Name=mRNA_L-elsbetiae_contig20447.6159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MLDQVLEDLLKVEEAGDDVEILRRSLAPIRTLGKDAAILARAAAESGASA
SLLGSAQAQVDETIRSGYSDCSFASVATTIEEEFCTAKDKDGDSGGG*
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mRNA from alignment at L-elsbetiae_contig20447:109..2072-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20447.6159.1 ID=mRNA_L-elsbetiae_contig20447.6159.1|Name=mRNA_L-elsbetiae_contig20447.6159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1964bp|location=Sequence derived from alignment at L-elsbetiae_contig20447:109..2072- (Laminarionema elsbetiae ELsaHSoW15)
CAGCCGAATGCTGGACCAGGTTCTGGAAGACTTGCTGAAGGTCGAAGAAG
CGGGCGACGACGTGGAGATTCTCCGGAGATCGCTCGCCCCGATACGGACG
CTCGGCAAGGACGCCGCCATCCTGGCGAGGGCGGCGGCAGAGAGCGGGGC
GTCGGCTTCGCTGCTTGGGTCTGCGCAGGCACAGGTAAAAATACGTTAAA
TGCATGCCATTTTTTTTTTTTTTAAGCCCCGAAGCTGGTGACTACTGCTT
TTTGAGACTACTGTTGTACTTCGAATTTATGGTTGTTGTTGGGGGTTGGA
ACAGCAGTCCGACAGCAACAACAACAGTGTATACATTACAGTGTATACAT
TGTGCCATTCCTGAGTTGCAATGTCGAGGTTGATAGATGTCTCTCTCTTG
TCGCGCCTGGTGGCATCTATTATATGCGTAGTACATGCGTGGGTAGATGA
TTGTCTCTTGTCCAGCAAGCCGTTGTTGTTGCCTCGTTTTTTTTTTTTTT
TAACGTTTGTGAACAAACCATGTTAACATAAACACCTGTGTACTACAAGG
TTGTACATACATAGAAGTATGTAACATCTCGGACGAGACGCAAAGCAGAG
GTGTCACTACTACTACTGTTGCTGTTTGTTGTCAACGTTTTTATTTAGTA
TCAGCGCAACAACCGCCGACTACTTATTCTGGTACCAGAAGGGGGTCGAG
ATTGATTGTTCGGCTCGGCGAAGAACGCGCAAAGAGAGGACACCTAACCC
TATGTACCCTACTAGTATTCATTTACGCCTAAACAGCGCGAACGAACTAA
ATACGTCTGTGAAACATGTTAGCCACTTTAGCGGACAGGGCACGGCAAGA
CTCCGGCGTAGCTACATAGGTCGCTTAGCTGCTTGGCATTCTTTTTGTGG
GCGCTGAACTTTGCGCTTTGTATGTATGTTGTGTGTAGGTGCGGTTGTTG
CTCATGTCACCCCCAGTTCTTCCTCTCTCTTTTGCCGCTGCTGACCTTTC
CGCGCCGCTGGCTGCACCGACCTTGCTGGGTGGACGGCATTATGTATTTT
CTGCCGAGCGTTGTGTTGGAAGAGACCCCCCAGACAGGCAACGGGTGCCG
CCAGTGTTGTCCGATTGGGCGGCGCACCCACCCGTCTTGGGTTGAGCGCG
CGGTGTGACTTCTTTCGATGAATGGGGTTTCGATCGTGTCGTGGCGTGTC
TACAGGTAGTCTATTGTGCAGCTCAAGAGGGCGTTTTTATTTTCTTCCCC
TCGCCGCTCCTACATACTTGCATAATACGTATGTATCGTACACGTAAAAA
AGTCCCGTTTCGCTGCTGGTGCTGCTATGTACTGGTAGCAGTGATAGTGG
TGGTGGTGGTGGTGTGGTGTGATGAATTCCTGCTTCGCTGCCGCGCACTG
CGCAAACAAACGTTGCAGGTGGACGAGACTATCAGGTCCGGCTACTCCGA
CTGCTCGTTCGCGTCAGTGGCAACCACCATCGAGGAGGAGTTCTGCACAG
CCAAAGACAAGGACGGCGACAGCGGCGGAGGATAGAAGCGGGCCGTGTAG
TAGTTTTGTCGTCCTTGTGGCAATAGCCGCCAACTATACGATGGGCACCA
GCAGTTACGTACATAGCAAGCACGTATTTACCGGGGTATTTTGTATTTTG
GGGCTTGTCGGCCAGCTAAATAGTTCTCCGGCCCTGGTTCCAGCTTCCAG
TCAGATTGCGGCAGCGTCCTGAAATCAGTTTGCGAGAGCGCCTCTCCTCC
CCATAATTTTGGAGATGTTTCATTTAGATATGTATGTAGATACATTTTTG
GAGCAATCTTTCAGTCTTGATCATGCATCTGCGGATTAGCATCGGAGGTA
GGACTAACTACAGAAGGGGTCAGAAACTTACAGGGATGTACATAACGGGA
GATCGTCCACGTTACGTCCCCGTAATAACGGCAAATCAGGGTTTGACGTT
ACGTCCCCGTAATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20447:109..2072-

>mRNA_L-elsbetiae_contig20447.6159.1 ID=mRNA_L-elsbetiae_contig20447.6159.1|Name=mRNA_L-elsbetiae_contig20447.6159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig20447:109..2072- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGACCAGGTTCTGGAAGACTTGCTGAAGGTCGAAGAAGCGGGCGA
CGACGTGGAGATTCTCCGGAGATCGCTCGCCCCGATACGGACGCTCGGCA
AGGACGCCGCCATCCTGGCGAGGGCGGCGGCAGAGAGCGGGGCGTCGGCT
TCGCTGCTTGGGTCTGCGCAGGCACAGATGCTGGACCAGGTTCTGGAAGA
CTTGCTGAAGGTCGAAGAAGCGGGCGACGACGTGGAGATTCTCCGGAGAT
CGCTCGCCCCGATACGGACGCTCGGCAAGGACGCCGCCATCCTGGCGAGG
GCGGCGGCAGAGAGCGGGGCGTCGGCTTCGCTGCTTGGGTCTGCGCAGGC
ACAGGTGGACGAGACTATCAGGTCCGGCTACTCCGACTGCTCGTTCGCGT
CAGTGGCAACCACCATCGAGGAGGAGTTCTGCACAGCCAAAGACAAGGAC
GGCGACAGCGGCGGAGGATAGGTGGACGAGACTATCAGGTCCGGCTACTC
CGACTGCTCGTTCGCGTCAGTGGCAACCACCATCGAGGAGGAGTTCTGCA
CAGCCAAAGACAAGGACGGCGACAGCGGCGGAGGATAG
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