mRNA_L-elsbetiae_contig20410.6149.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20410.6149.1
Unique NamemRNA_L-elsbetiae_contig20410.6149.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20410.6149.1 vs. uniprot
Match: A0A6H5KMV8_9PHAE (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMV8_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 5.750e-58
Identity = 90/107 (84.11%), Postives = 100/107 (93.46%), Query Frame = 2
Query:    2 SDGSNVIVTCHLGLDIPGDEDCLMWVGVDMERRAWRNNKLLCMDTSYLHWTRNNTDKERIILLVMVWHPDLTPKEKRVLEYLDCLIRSAASGEPLPALPPAVPVEGG 322
            SDGSNVI+TCHLGLD+PGDE+CLMWVGV+ME RAWRNNKLLC DTSYLHWTRNNT+KERIILLVMVWHPD+TPKE+RVLEYLD LIRSAA+G+PLP  PP + VEGG
Sbjct:  263 SDGSNVIITCHLGLDVPGDEECLMWVGVNMESRAWRNNKLLCTDTSYLHWTRNNTEKERIILLVMVWHPDITPKEQRVLEYLDSLIRSAAAGKPLPLQPPNL-VEGG 368          
BLAST of mRNA_L-elsbetiae_contig20410.6149.1 vs. uniprot
Match: D7FV35_ECTSI (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV35_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 7.250e-18
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 SDGSNVIVTCHLGLDIPGDEDCLMWVGVDMERRAWRNNKLLCMDTSYLHWTRNNTDKERIILLVMVWHPDLTPKEKRVLEYLDCLIRSAASGEPLPALPPAVPVEGG 322
            +DG N I+T HLG+D+P  EDC  W+ V  E+R+W N K L +DTS+ H TRN++ ++RI+L++  WHPDLT  E+  L ++  L     SGE    +P   P E G
Sbjct:  241 TDGRNFILTTHLGVDVP--EDC--WMRVGEEKRSWENGKALILDTSFEHETRNDSRRDRIVLIIDYWHPDLTKAEQEALAFVYDLRNKFESGE----IPLEEPEEKG 339          
BLAST of mRNA_L-elsbetiae_contig20410.6149.1 vs. uniprot
Match: A0A7S2DSZ2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSZ2_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.810e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 2
Query:    2 SDGSNVIVTCHLGLDIPGDEDCLMWVGVDMERRAWRNNKLLCMDTSYLHWTRNNTDKERIILLVMVWHPDLTPKEKRVLEYL-DCL 256
            SD SN ++T HLG+D+P  E    W+ V  ERR W+N K+L  DTS LH   N + ++R +L++ +WHPD+T  E++ L+++ DC+
Sbjct:  214 SDMSNFVLTAHLGIDVPEGE---CWIQVGNERREWKNGKMLVFDTSVLHEAANESPRDRYVLMLRLWHPDVTQAERKALQFIFDCV 296          
BLAST of mRNA_L-elsbetiae_contig20410.6149.1 vs. uniprot
Match: A0A7S1XP57_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XP57_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.590e-16
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    2 SDGSNVIVTCHLGLDIPGDEDCLMWVGVDMERRAWRNNKLLCMDTSYLHWTRNNTDKERIILLVMVWHPDLTPKEKRVLEYL 247
            +D +N I+T HLGLD P   DC  W+ V  E++ W N K + MDTS++H T NNTD++R +LL+ VWHP++T  E+  L ++
Sbjct:  211 TDFTNFILTAHLGLDTPTG-DC--WIKVGEEKKNWENGKTILMDTSFIHSTENNTDQDRFVLLLRVWHPEVTKIEREALSFV 289          
BLAST of mRNA_L-elsbetiae_contig20410.6149.1 vs. uniprot
Match: A0A7S0U098_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U098_HEMAN)

HSP 1 Score: 85.5 bits (210), Expect = 1.140e-15
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 2
Query:    2 SDGSNVIVTCHLGLDIPGDEDCLMWVGVDMERRAWRNNKLLCMDTSYLHWTRNNTDKERIILLVMVWHPDLTPKEKRVLEYL-DCL 256
            SD  N  +T HLGLD+P +  C  W+ V  ERR WRN ++L  DTS +H   N  D++R IL++ VWHPDL+P E   ++Y+ DCL
Sbjct:  311 SDYCNFALTSHLGLDVP-EGQC--WIEVGNERREWRNGEMLLFDTSLMHKAANEADQKRFILMLRVWHPDLSPSEVDAIKYIFDCL 393          
BLAST of mRNA_L-elsbetiae_contig20410.6149.1 vs. uniprot
Match: A0A7S3FG01_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FG01_9VIRI)

HSP 1 Score: 79.0 bits (193), Expect = 7.870e-14
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 SDGSNVIVTCHLGLDIPG-DEDCLMWVGVDMERRAWRNNKLLCMDTSYLHWTRNNTDKERIILLVMVWHPDLTPKEKRVLEYL 247
            +DG N ++T HLGLD+P  DE C M VG D  +R W N  +L  DTS+ H T N+ D +R +LL+  WH DLT  E++ L+++
Sbjct:  171 TDGCNFVMTSHLGLDVPHEDERCWMRVGKD--KRPWANGGILMCDTSFEHETYNDADTDRYVLLIRHWHHDLTKTERKALQWI 251          
BLAST of mRNA_L-elsbetiae_contig20410.6149.1 vs. uniprot
Match: A0A7S1U6E0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6E0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.240e-13
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 2
Query:    2 SDGSNVIVTCHLGLDIPGDEDCLMWVGVDMERRAWRNNKLLCMDTSYLHWTRNNTDKERIILLVMVWHPDLTPKEKRVLE 241
            SD  N I+T HLGL +P D     W+ V  ERR W  NK +  DTS+ H T N +D+ER++L++  WHPDL+  E+  L+
Sbjct:  209 SDARNFILTAHLGLKVPEDPT-KAWMQVGAERRNWEENKAVIFDTSFEHSTGNESDEERVVLIIDFWHPDLSLPEREALQ 287          
BLAST of mRNA_L-elsbetiae_contig20410.6149.1 vs. uniprot
Match: A0A1E7EX96_9STRA (Asp_Arg_Hydrox-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EX96_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.400e-13
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2
Query:    2 SDGSNVIVTCHLGLDIPGDEDCLMWVGVDMERRAWRNNKLLCMDTSYLHWTRNNTDKERIILLVMVWHPDLTPKEKRVLEYLDCLIRSAASG 277
            SDG N I+T HLGL +P  + C  W+ V  ER++W   KLL +DTS++H T N T  +R +L++  WH +LT  E+  LE++  L     SG
Sbjct:  226 SDGRNFILTSHLGLQVP--DGC--WIQVGNERKSWEKQKLLTLDTSFVHSTGNPTSDDRYVLIIDCWHSELTEPEQAALEFVYDLRNKFESG 313          
BLAST of mRNA_L-elsbetiae_contig20410.6149.1 vs. uniprot
Match: A0A448ZNB0_9STRA (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNB0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.370e-13
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 2
Query:    2 SDGSNVIVTCHLGLDIP--GDEDCLMWVGVDMERRAWRNNKLLCMDTSYLHWTRNNTDKERIILLVMVWHPDLTPKEKRVLEY-LDCL 256
            SD +N ++T HL LDIP  G+  C + VG   E R W N K    DTS LH   N +DK R IL++ VWHPDLT  EK  L++  DCL
Sbjct:  234 SDFTNFVLTSHLALDIPYSGENRCRLTVGD--ETREWINGKSYVFDTSLLHDAENESDKMRYILMMRVWHPDLTAIEKEALQFTFDCL 319          
BLAST of mRNA_L-elsbetiae_contig20410.6149.1 vs. uniprot
Match: A0A7S2MQZ1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQZ1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.780e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    2 SDGSNVIVTCHLGLDIP--GDEDCLMWVGVDMERRAWRNNKLLCMDTSYLHWTRNNTDKERIILLVMVWHPDLTPKEKRVLEYL 247
            SD +N ++T HL LDIP  G+  C + +G   E R W N +++  DTS +H   N +D+ R IL++ +WHPDLT  EK  L++L
Sbjct:   49 SDFTNFVLTSHLALDIPCSGENKCRLSIGD--ETRQWINGEVMLFDTSIMHDAINESDEMRYILMLRLWHPDLTEVEKEALQFL 130          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20410.6149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMV8_9PHAE5.750e-5884.11Asp_Arg_Hydrox domain-containing protein n=2 Tax=E... [more]
D7FV35_ECTSI7.250e-1843.93Asp_Arg_Hydrox domain-containing protein n=2 Tax=E... [more]
A0A7S2DSZ2_9STRA3.810e-1643.02Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XP57_9STRA5.590e-1646.34Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0U098_HEMAN1.140e-1547.67Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S3FG01_9VIRI7.870e-1445.78Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7S1U6E0_9STRA1.240e-1345.00Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A1E7EX96_9STRA1.400e-1342.39Asp_Arg_Hydrox-domain-containing protein n=1 Tax=F... [more]
A0A448ZNB0_9STRA3.370e-1348.86Asp_Arg_Hydrox domain-containing protein n=1 Tax=P... [more]
A0A7S2MQZ1_9STRA9.780e-1342.86Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20410contigL-elsbetiae_contig20410:744..1702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size693
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20410.6149.1prot_L-elsbetiae_contig20410.6149.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20410 744..1112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.6989145-CDS-L-elsbetiae_contig20410:743..11121622815842.6989145-CDS-L-elsbetiae_contig20410:743..1112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20410 744..1112 -
1691683139.8986256-CDS-L-elsbetiae_contig20410:743..11121691683139.8986256-CDS-L-elsbetiae_contig20410:743..1112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20410 744..1112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.709915-UTR-L-elsbetiae_contig20410:1112..13191622815842.709915-UTR-L-elsbetiae_contig20410:1112..1319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20410 1113..1319 -
1691683139.9086401-UTR-L-elsbetiae_contig20410:1112..13191691683139.9086401-UTR-L-elsbetiae_contig20410:1112..1319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20410 1113..1319 -
1622815842.7203348-UTR-L-elsbetiae_contig20410:1585..17021622815842.7203348-UTR-L-elsbetiae_contig20410:1585..1702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20410 1586..1702 -
1691683139.9204528-UTR-L-elsbetiae_contig20410:1585..17021691683139.9204528-UTR-L-elsbetiae_contig20410:1585..1702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20410 1586..1702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20410.6149.1

>prot_L-elsbetiae_contig20410.6149.1 ID=prot_L-elsbetiae_contig20410.6149.1|Name=mRNA_L-elsbetiae_contig20410.6149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MTPQYIVASRYISTEKYTCVVQLVLGPSESFGRTFLAVQHGLVLPLPIEA
VEHSVAFLSLASLRRGSRNKYIFSLQSMCTLAASSLVQQAYLRECNIARA
FVSPLQKRYAPAVYGTAINDIN*
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mRNA from alignment at L-elsbetiae_contig20410:744..1702-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20410.6149.1 ID=mRNA_L-elsbetiae_contig20410.6149.1|Name=mRNA_L-elsbetiae_contig20410.6149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=959bp|location=Sequence derived from alignment at L-elsbetiae_contig20410:744..1702- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGACGGATCGAATGTGATTGTCACGTGCCATCTAGGCTTGGATATCC CAGGGGACGAAGACTGCCTCATGTGGGTCGGGGTCGACATGGAGCGTCGG GCTTGGCGCAACAACAAGTGAGTGAGCGTGTCGTAAGCACCGCTCGAAAT CGAGACCACTTTTGTACGCAGCTAGCTAGCTTCCTTCAGGCAGACGCTAA GTAGTAGTTGCCTTTGCTCGTCACCACAGATCCGAGAGGTAGTGCTGTCG TGCTATCCGACCTTATCGACTGAGACATGCTAGTGCTAGTGTGATTGTAT GTATGAGTATGGTGTTTTCCCGGCCTCCTCGCTTCCGCTCCCCCCCCCCC CTGATCCTTCGGCGGTCGATCTCCACCCACCAGGCTTCTTTGCATGGACA CAAGCTATCTGCACTGGACACGGAATAACACCGACAAGGAGCGAATAATC CTGCTCGTGATGGTGTGGCACCCCGACCTCACGCCCAAGGAGAAGCGAGT GCTGGAGTACCTCGATTGCCTGATCAGGAGCGCGGCTTCGGGGGAGCCCT TGCCGGCCCTCCCTCCAGCTGTACCGGTAGAAGGAGGACCATGACACCGC AGTACATAGTGGCATCCCGCTACATTTCGACGGAGAAATACACATGTGTC GTTCAGTTGGTTCTGGGCCCATCCGAGAGTTTCGGCCGTACTTTCCTGGC GGTTCAGCACGGCCTTGTACTCCCTCTCCCCATTGAAGCGGTAGAGCATT CCGTGGCGTTTTTATCTCTGGCAAGCTTACGCCGTGGTTCCAGAAATAAG TATATATTTAGTCTCCAGTCGATGTGCACGTTGGCAGCTAGCTCCCTTGT GCAGCAGGCGTACTTGCGTGAGTGCAATATCGCTCGGGCTTTTGTTTCAC CCCTGCAAAAAAGATACGCTCCTGCAGTGTATGGCACCGCAATTAATGAC ATCAATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20410:744..1702-

>mRNA_L-elsbetiae_contig20410.6149.1 ID=mRNA_L-elsbetiae_contig20410.6149.1|Name=mRNA_L-elsbetiae_contig20410.6149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig20410:744..1702- (Laminarionema elsbetiae ELsaHSoW15)
ATGACACCGCAGTACATAGTGGCATCCCGCTACATTTCGACGGAGAAATA
CACATGTGTCGTTCAGTTGGTTCTGGGCCCATCCGAGAGTTTCGGCCGTA
CTTTCCTGGCGGTTCAGCACGGCCTTGTACTCCCTCTCCCCATTGAAGCG
GTAGAGCATTCCGTGGCGTTTTTATCTCTGGCAAGCTTACGCCGTGGTTC
CAGAAATAAGTATATATTTAGTCTCCAGTCGATGTGCACGTTGGCAGCTA
GCTCCCTTGTGCAGCAGGCGTACTTGCGTGAGTGCAATATCGCTCGGGCT
TTTGTTTCACCCCTGCAAAAAAGATACGCTCCTGCAGTGTATGGCACCGC
AATTAATGACATCAATTGAATGACACCGCAGTACATAGTGGCATCCCGCT
ACATTTCGACGGAGAAATACACATGTGTCGTTCAGTTGGTTCTGGGCCCA
TCCGAGAGTTTCGGCCGTACTTTCCTGGCGGTTCAGCACGGCCTTGTACT
CCCTCTCCCCATTGAAGCGGTAGAGCATTCCGTGGCGTTTTTATCTCTGG
CAAGCTTACGCCGTGGTTCCAGAAATAAGTATATATTTAGTCTCCAGTCG
ATGTGCACGTTGGCAGCTAGCTCCCTTGTGCAGCAGGCGTACTTGCGTGA
GTGCAATATCGCTCGGGCTTTTGTTTCACCCCTGCAAAAAAGATACGCTC
CTGCAGTGTATGGCACCGCAATTAATGACATCAATTGA
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