mRNA_L-elsbetiae_contig2041.6146.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2041.6146.1
Unique NamemRNA_L-elsbetiae_contig2041.6146.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2041.6146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2041contigL-elsbetiae_contig2041:13277..13749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size474
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.4543934-CDS-L-elsbetiae_contig2041:13276..136451622815842.4543934-CDS-L-elsbetiae_contig2041:13276..13645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2041 13277..13645 +
1691683139.762369-CDS-L-elsbetiae_contig2041:13276..136451691683139.762369-CDS-L-elsbetiae_contig2041:13276..13645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2041 13277..13645 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.469749-UTR-L-elsbetiae_contig2041:13645..137491622815842.469749-UTR-L-elsbetiae_contig2041:13645..13749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2041 13646..13749 +
1691683139.7710714-UTR-L-elsbetiae_contig2041:13645..137491691683139.7710714-UTR-L-elsbetiae_contig2041:13645..13749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2041 13646..13749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2041.6146.1prot_L-elsbetiae_contig2041.6146.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2041 13277..13645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2041.6146.1

>prot_L-elsbetiae_contig2041.6146.1 ID=prot_L-elsbetiae_contig2041.6146.1|Name=mRNA_L-elsbetiae_contig2041.6146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
PVSPAIGFSATVLSRIFYAHRATASYHAATNFAPLLYIIPLTCGTENVQR
QARKNLTGQGQCRSLRRTEDVEPQQKKENKDKTKSDVHTFVGTPPKNPPT
PRRRFSRTNTRHLGPCTAHEHS*
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mRNA from alignment at L-elsbetiae_contig2041:13277..13749+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2041.6146.1 ID=mRNA_L-elsbetiae_contig2041.6146.1|Name=mRNA_L-elsbetiae_contig2041.6146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=473bp|location=Sequence derived from alignment at L-elsbetiae_contig2041:13277..13749+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGTCTCTCCCGCCATCGGGTTTTCGGCCACCGTATTGTCCCGCATTTT
TTATGCACATCGGGCCACTGCGTCATATCACGCTGCCACCAACTTCGCCC
CCCTCCTCTACATCATACCTCTTACGTGTGGCACCGAAAACGTGCAACGA
CAGGCTCGAAAGAACCTGACAGGTCAAGGCCAGTGCCGAAGTTTGCGACG
AACAGAAGACGTCGAGCCTCAGCAGAAAAAGGAAAACAAAGACAAAACAA
AATCCGACGTACATACGTTCGTTGGCACACCCCCCAAAAATCCACCCACG
CCCCGCCGTCGATTTTCAAGAACTAACACGCGGCATCTTGGCCCATGCAC
AGCCCATGAACACAGTTAGTCTACACGTGCACAGAGCAGCTAACCGAAAC
GCTGCTTGAGCAGCGCAAATCATTGCTTTCAGCTACATAACGAAAACGCT
GTTTAAGCAGCACAAAACCTTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2041:13277..13749+

>mRNA_L-elsbetiae_contig2041.6146.1 ID=mRNA_L-elsbetiae_contig2041.6146.1|Name=mRNA_L-elsbetiae_contig2041.6146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig2041:13277..13749+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGTCTCTCCCGCCATCGGGTTTTCGGCCACCGTATTGTCCCGCATTTT
TTATGCACATCGGGCCACTGCGTCATATCACGCTGCCACCAACTTCGCCC
CCCTCCTCTACATCATACCTCTTACGTGTGGCACCGAAAACGTGCAACGA
CAGGCTCGAAAGAACCTGACAGGTCAAGGCCAGTGCCGAAGTTTGCGACG
AACAGAAGACGTCGAGCCTCAGCAGAAAAAGGAAAACAAAGACAAAACAA
AATCCGACGTACATACGTTCGTTGGCACACCCCCCAAAAATCCACCCACG
CCCCGCCGTCGATTTTCAAGAACTAACACGCGGCATCTTGGCCCATGCAC
AGCCCATGAACACAGTTAGCCTGTCTCTCCCGCCATCGGGTTTTCGGCCA
CCGTATTGTCCCGCATTTTTTATGCACATCGGGCCACTGCGTCATATCAC
GCTGCCACCAACTTCGCCCCCCTCCTCTACATCATACCTCTTACGTGTGG
CACCGAAAACGTGCAACGACAGGCTCGAAAGAACCTGACAGGTCAAGGCC
AGTGCCGAAGTTTGCGACGAACAGAAGACGTCGAGCCTCAGCAGAAAAAG
GAAAACAAAGACAAAACAAAATCCGACGTACATACGTTCGTTGGCACACC
CCCCAAAAATCCACCCACGCCCCGCCGTCGATTTTCAAGAACTAACACGC
GGCATCTTGGCCCATGCACAGCCCATGAACACAGTTAG
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