mRNA_L-elsbetiae_contig20408.6144.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20408.6144.1
Unique NamemRNA_L-elsbetiae_contig20408.6144.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20408.6144.1 vs. uniprot
Match: D7G5W4_ECTSI (STE20-like serine/threonine kinase Ste20-like serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5W4_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 6.520e-44
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 2 
Query:    2 WPTGADGYKLDKIIGKGAFATVWKAFCATRGVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS 217
            WPTGADGYKLD+IIGKGAFATVWKAFC  R VHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS
Sbjct:   14 WPTGADGYKLDRIIGKGAFATVWKAFCEAREVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS 85
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BLAST of mRNA_L-elsbetiae_contig20408.6144.1 vs. uniprot
Match: A0A6H5JLL3_9PHAE (Ste20-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL3_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.230e-40
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 2 
Query:    2 WPTGADGYKLDKIIGKGAFATVWKAFCATRGVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS 217
            WPTGADGYKLD+IIGKGAFATVWKAFC  R VHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS
Sbjct:   27 WPTGADGYKLDRIIGKGAFATVWKAFCEAREVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS 98
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BLAST of mRNA_L-elsbetiae_contig20408.6144.1 vs. uniprot
Match: A0A835Z4G7_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.320e-29
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 2 
Query:    2 WPTGADGYKLDKIIGKGAFATVWKAFCATRGVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS 217
            WP  A+GY+L+K IG+GAFATVWKAFC  R   VA+K+MDLENVTH+FEDIRQEV VMR+CDHPNV+ CY S
Sbjct:   16 WPCTAEGYELEKQIGQGAFATVWKAFCFDRNQPVAIKIMDLENVTHAFEDIRQEVNVMRLCDHPNVVRCYCS 87
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BLAST of mRNA_L-elsbetiae_contig20408.6144.1 vs. uniprot
Match: A0A024GBY1_9STRA (Protein kinase domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GBY1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.750e-24
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:    2 WPTGADGYKLDKIIGKGAFATVWKAFCATRGVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCY 211
            WPT A  Y+L + IG+GAFA VWKA C  + V VA+K+MDLE +T SFEDIR EV  M+M +HPNVL CY
Sbjct:    6 WPTNASDYRLVEQIGQGAFAKVWKAHCIKKNVDVALKIMDLEKITTSFEDIRAEVQTMKMTNHPNVLKCY 75
[Close]
BLAST of mRNA_L-elsbetiae_contig20408.6144.1 vs. uniprot
Match: M4BWB8_HYAAE (Protein kinase domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=M4BWB8_HYAAE)

HSP 1 Score: 101 bits (251), Expect = 6.150e-24
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 2 
Query:    2 WPTGADGYKLDKIIGKGAFATVWKAFCATRGVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS 217
            WPT A  YK+ + IG+GAFA VWKA+C  + +HVA+K+MDLE +T SFEDIR EV  M+M +HPNVL CY S
Sbjct:    5 WPTVASEYKIIEQIGQGAFAKVWKAYCVAKKIHVAIKIMDLEKITTSFEDIRAEVQTMKMTNHPNVLKCYCS 76
[Close]
BLAST of mRNA_L-elsbetiae_contig20408.6144.1 vs. uniprot
Match: H3HC15_PHYRM (Protein kinase domain-containing protein n=25 Tax=Oomycota TaxID=4762 RepID=H3HC15_PHYRM)

HSP 1 Score: 100 bits (250), Expect = 1.050e-23
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 2 
Query:    2 WPTGADGYKLDKIIGKGAFATVWKAFCATRGVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS 217
            WPT A  Y++ + IG+GAFA VWKA+CA + +HVA+K+MDLE +T SFEDIR EV  M+M +HPNVL CY S
Sbjct:    5 WPTVASEYQIIEQIGQGAFAKVWKAYCAPKKIHVAIKIMDLEKITTSFEDIRAEVQTMKMTNHPNVLKCYCS 76
[Close]
BLAST of mRNA_L-elsbetiae_contig20408.6144.1 vs. uniprot
Match: A0A2D4BF87_PYTIN (Protein kinase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF87_PYTIN)

HSP 1 Score: 100 bits (248), Expect = 1.050e-23
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 2 
Query:    2 WPTGADGYKLDKIIGKGAFATVWKAFCATRGVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS 217
            WPT A  Y++ + IG+GAFA VWKA+CA +  HVA+K+MDLE +T SFEDIR EV  M+M +HPNVL CY S
Sbjct:    5 WPTVASDYQIIEQIGQGAFAKVWKAYCAPKKTHVAIKIMDLEKITTSFEDIRAEVQTMKMTNHPNVLKCYCS 76
[Close]
BLAST of mRNA_L-elsbetiae_contig20408.6144.1 vs. uniprot
Match: A0A5D6YGQ3_9STRA (Protein kinase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YGQ3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.520e-23
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 2 
Query:    2 WPTGADGYKLDKIIGKGAFATVWKAFCATRGVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS 217
            WPT A  Y++ + IG+GAFA VWKA+CA +  HVA+K+MDLE +T SFEDIR EV  M+M +HPNVL CY S
Sbjct:    5 WPTVAAEYQIIEQIGQGAFAKVWKAYCAPKKAHVAIKIMDLEKITTSFEDIRAEVQTMKMTNHPNVLKCYCS 76
[Close]
BLAST of mRNA_L-elsbetiae_contig20408.6144.1 vs. uniprot
Match: A0A662WTR8_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTR8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.210e-23
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 2 
Query:    2 WPTGADGYKLDKIIGKGAFATVWKAFCATRGVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS 217
            WPT A  Y++ + IG+GAFA VWKA+C  + +HVA+K+MDLE +T SFEDIR EV  M+M +HPNVL CY S
Sbjct:   46 WPTVAAEYQIIEQIGQGAFAKVWKAYCVPKKIHVAIKIMDLEKITTSFEDIRAEVQTMKMTNHPNVLKCYCS 117
[Close]
BLAST of mRNA_L-elsbetiae_contig20408.6144.1 vs. uniprot
Match: A0A8K1CM74_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CM74_PYTOL)

HSP 1 Score: 98.2 bits (243), Expect = 1.100e-22
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 2 
Query:    2 WPTGADGYKLDKIIGKGAFATVWKAFCATRGVHVAVKVMDLENVTHSFEDIRQEVAVMRMCDHPNVLSCYAS 217
            WPT A  Y++ + IG+GAFA VWKA+C  +  HVA+K+MDLE +T SFEDIR EV  M+M +HPNVL CY S
Sbjct:    5 WPTVASDYQIIEQIGQGAFAKVWKAYCIPKKTHVAIKIMDLEKITTSFEDIRAEVQTMKMTNHPNVLKCYCS 76
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20408.6144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5W4_ECTSI6.520e-4494.44STE20-like serine/threonine kinase Ste20-like seri... [more]
A0A6H5JLL3_9PHAE1.230e-4094.44Ste20-like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A835Z4G7_9STRA1.320e-2972.22Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A024GBY1_9STRA2.750e-2461.43Protein kinase domain-containing protein n=1 Tax=A... [more]
M4BWB8_HYAAE6.150e-2461.11Protein kinase domain-containing protein n=7 Tax=P... [more]
H3HC15_PHYRM1.050e-2361.11Protein kinase domain-containing protein n=25 Tax=... [more]
A0A2D4BF87_PYTIN1.050e-2361.11Protein kinase, putative n=1 Tax=Pythium insidiosu... [more]
A0A5D6YGQ3_9STRA1.520e-2361.11Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A662WTR8_9STRA3.210e-2359.72Protein kinase domain-containing protein n=2 Tax=N... [more]
A0A8K1CM74_PYTOL1.100e-2259.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20408contigL-elsbetiae_contig20408:502..1187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size220
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815842.4083612-CDS-L-elsbetiae_contig20408:501..5571622815842.4083612-CDS-L-elsbetiae_contig20408:501..557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20408 502..557 -
1691683139.7387981-CDS-L-elsbetiae_contig20408:501..5571691683139.7387981-CDS-L-elsbetiae_contig20408:501..557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20408 502..557 -
1622815842.4208074-CDS-L-elsbetiae_contig20408:1024..11871622815842.4208074-CDS-L-elsbetiae_contig20408:1024..1187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20408 1025..1187 -
1691683139.753476-CDS-L-elsbetiae_contig20408:1024..11871691683139.753476-CDS-L-elsbetiae_contig20408:1024..1187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20408 1025..1187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20408.6144.1prot_L-elsbetiae_contig20408.6144.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20408 502..1187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20408.6144.1

>prot_L-elsbetiae_contig20408.6144.1 ID=prot_L-elsbetiae_contig20408.6144.1|Name=mRNA_L-elsbetiae_contig20408.6144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MAHRCRRLQARQNYWERSVRDGVEGVLRDAGGARGCKGNGSRERHTQLRG
HSSRGGGDAYVRSPECSELLRIV
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mRNA from alignment at L-elsbetiae_contig20408:502..1187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20408.6144.1 ID=mRNA_L-elsbetiae_contig20408.6144.1|Name=mRNA_L-elsbetiae_contig20408.6144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=686bp|location=Sequence derived from alignment at L-elsbetiae_contig20408:502..1187- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCACCGGTGCAGACGGCTACAAGCTCGACAAAATTATTGGGAAAG
GAGCGTTCGCGACGGTGTGGAAGGCGTTTTGCGCGACGCGGGGGGTGCAC
GTGGCTGTAAAGGTAATGGATCTCGAGAACGTCACACACAGCTTCGAGGA
CATTCGTCAAGAGGTAGGCGAACTAGCCACGCATTTGTATGTTCTTTTCC
CTTACGGTTTCCCCCCCTGAATCTTTTGTGAAGCATGCTTAGTTACGCTT
CGTTCTGAACGCATCGGTTTGAGAATTCTTCTGTAACAGAACACTTTGGA
GTCGATTTTATTCCGGAAGATACCCGCCAGCATTGAACACCATTTGCGGA
GCCAAACTGTAAACTTAGTGTTAACTCGTCTTTGGCATCATGTGCCTCAT
GAGAGGGTAAAGAGGATAACCATCGTAAGGCAAAGACCTTCAAGCGCCGT
TATTGTTGGTGCATTTCTCCACGTTCTCACAAACGGTTCAAATAAGGGAC
GTATGGTGCTAGAGCATAGATTATAATCGGTTTTTAGAGTACGAACCACT
TCCACGACGCAACCACAAACCCCTTTTACACAAATGCCTCAAGTTACCTG
AAGTTTGTATTTTTTGCTCGGGTTTCGCAGGTGGCGGTGATGCGTATGTG
CGATCACCCGAATGTTCTGAGCTGCTACGCATCGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20408:502..1187-

>mRNA_L-elsbetiae_contig20408.6144.1 ID=mRNA_L-elsbetiae_contig20408.6144.1|Name=mRNA_L-elsbetiae_contig20408.6144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig20408:502..1187- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCACCGGTGCAGACGGCTACAAGCTCGACAAAATTATTGGGAAAG
GAGCGTTCGCGACGGTGTGGAAGGCGTTTTGCGCGACGCGGGGGGTGCAC
GTGGCTGTAAAGGTAATGGATCTCGAGAACGTCACACACAGCTTCGAGGA
CATTCGTCAAGAGATGGCCCACCGGTGCAGACGGCTACAAGCTCGACAAA
ATTATTGGGAAAGGAGCGTTCGCGACGGTGTGGAAGGCGTTTTGCGCGAC
GCGGGGGGTGCACGTGGCTGTAAAGGTAATGGATCTCGAGAACGTCACAC
ACAGCTTCGAGGACATTCGTCAAGAGGTGGCGGTGATGCGTATGTGCGAT
CACCCGAATGTTCTGAGCTGCTACGCATCGTTGTGGCGGTGATGCGTATG
TGCGATCACCCGAATGTTCTGAGCTGCTACGCATCGTT
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