mRNA_L-elsbetiae_contig2039.6131.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2039.6131.1
Unique NamemRNA_L-elsbetiae_contig2039.6131.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2039.6131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2039contigL-elsbetiae_contig2039:64..416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815840.9129822-CDS-L-elsbetiae_contig2039:63..4141622815840.9129822-CDS-L-elsbetiae_contig2039:63..414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2039 64..414 +
1691683138.6155684-CDS-L-elsbetiae_contig2039:63..4141691683138.6155684-CDS-L-elsbetiae_contig2039:63..414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2039 64..414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2039.6131.1prot_L-elsbetiae_contig2039.6131.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2039 64..414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2039.6131.1

>prot_L-elsbetiae_contig2039.6131.1 ID=prot_L-elsbetiae_contig2039.6131.1|Name=mRNA_L-elsbetiae_contig2039.6131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
FVLHHPRPLCSHELAPKGDLVFVDKYGETWRYVGHGTRLARGTARTGLKY
RPILLTTDSDLYPRFNSPRFRFQLISSPPPDEGSKYVPCRGRGFHLPSVV
QHAEIFASFLLRPCCRT
back to top

mRNA from alignment at L-elsbetiae_contig2039:64..416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2039.6131.1 ID=mRNA_L-elsbetiae_contig2039.6131.1|Name=mRNA_L-elsbetiae_contig2039.6131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=353bp|location=Sequence derived from alignment at L-elsbetiae_contig2039:64..416+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGTCTTGCATCACCCCCGTCCCCTGTGCTCTCATGAGCTCGCTCCGAA
GGGTGATCTTGTATTTGTGGATAAATATGGGGAGACATGGCGGTATGTCG
GACACGGAACACGGCTAGCTAGGGGCACAGCAAGGACAGGACTTAAGTAC
AGACCTATACTCTTAACAACAGACAGCGACTTGTACCCAAGATTCAACAG
CCCCCGCTTCCGTTTTCAACTCATATCAAGCCCCCCTCCCGACGAAGGTT
CAAAATATGTACCATGCCGCGGCAGGGGATTTCATCTCCCAAGTGTTGTA
CAACATGCAGAGATTTTCGCTTCGTTTCTCCTCCGCCCGTGTTGCCGCAC
GCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2039:64..416+

>mRNA_L-elsbetiae_contig2039.6131.1 ID=mRNA_L-elsbetiae_contig2039.6131.1|Name=mRNA_L-elsbetiae_contig2039.6131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig2039:64..416+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGTCTTGCATCACCCCCGTCCCCTGTGCTCTCATGAGCTCGCTCCGAA
GGGTGATCTTGTATTTGTGGATAAATATGGGGAGACATGGCGGTATGTCG
GACACGGAACACGGCTAGCTAGGGGCACAGCAAGGACAGGACTTAAGTAC
AGACCTATACTCTTAACAACAGACAGCGACTTGTACCCAAGATTCAACAG
CCCCCGCTTCCGTTTTCAACTCATATCAAGCCCCCCTCCCGACGAAGGTT
CAAAATATGTACCATGCCGCGGCAGGGGATTTCATCTCCCAAGTGTTGTA
CAACATGCAGAGATTTTCGCTTCGTTTCTCCTCCGCCCGTGTTGCCGCAC
GTTCGTCTTGCATCACCCCCGTCCCCTGTGCTCTCATGAGCTCGCTCCGA
AGGGTGATCTTGTATTTGTGGATAAATATGGGGAGACATGGCGGTATGTC
GGACACGGAACACGGCTAGCTAGGGGCACAGCAAGGACAGGACTTAAGTA
CAGACCTATACTCTTAACAACAGACAGCGACTTGTACCCAAGATTCAACA
GCCCCCGCTTCCGTTTTCAACTCATATCAAGCCCCCCTCCCGACGAAGGT
TCAAAATATGTACCATGCCGCGGCAGGGGATTTCATCTCCCAAGTGTTGT
ACAACATGCAGAGATTTTCGCTTCGTTTCTCCTCCGCCCGTGTTGCCGCA
CG
back to top