mRNA_L-elsbetiae_contig2037.6129.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2037.6129.1
Unique NamemRNA_L-elsbetiae_contig2037.6129.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2037.6129.1 vs. uniprot
Match: D7G5Y3_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y3_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.050e-24
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 QRAGQAYATSNYRLAHELYTEAICVDMEDYHTNALLFANRAAALMNLQRPKDALKDCIEA 180
            +RAG+AYA++ YRLAHELY+EAICVD +DY+TNALLFANRAAALMNL R KDALKDCIEA
Sbjct:  147 ERAGKAYASNRYRLAHELYSEAICVDPQDYYTNALLFANRAAALMNLARNKDALKDCIEA 206
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BLAST of mRNA_L-elsbetiae_contig2037.6129.1 vs. uniprot
Match: A0A7J8G8E7_ROUAE (DnaJ heat shock protein family (Hsp40) member C7 n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8G8E7_ROUAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.590e-7
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   13 QAYATSNYRLAHELYTEAICVDMEDYHTNALLFANRAAALMNLQRPKDALKDCIEA 180
            +A+   NY+LA+ELYTEA+ +D  +  TNA LF NR      L++  DA++DC  A
Sbjct:  118 KAFKEGNYKLAYELYTEALGIDPNNIKTNAKLFCNRGTVNSKLRKLNDAIEDCTNA 173
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BLAST of mRNA_L-elsbetiae_contig2037.6129.1 vs. uniprot
Match: A0A093G2A9_DRYPU (DnaJ subfamily C member 7 (Fragment) n=2 Tax=Dryobates pubescens TaxID=118200 RepID=A0A093G2A9_DRYPU)

HSP 1 Score: 54.3 bits (129), Expect = 4.820e-7
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   13 QAYATSNYRLAHELYTEAICVDMEDYHTNALLFANRAAALMNLQRPKDALKDCIEA 180
            +A+   NY+LAHELYTEA+ +D  +  TNA L+ NR      L++ ++A+ DC  A
Sbjct:  108 KAFKEGNYKLAHELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEEAIDDCTNA 163
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BLAST of mRNA_L-elsbetiae_contig2037.6129.1 vs. uniprot
Match: R7VSV4_COLLI (DnaJ like protein subfamily C member 7 (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=R7VSV4_COLLI)

HSP 1 Score: 54.3 bits (129), Expect = 4.980e-7
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   13 QAYATSNYRLAHELYTEAICVDMEDYHTNALLFANRAAALMNLQRPKDALKDCIEA 180
            +A+   NY+LAHELYTEA+ +D  +  TNA L+ NR      L++ ++A+ DC  A
Sbjct:  240 KAFKEGNYKLAHELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEEAIDDCTNA 295
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BLAST of mRNA_L-elsbetiae_contig2037.6129.1 vs. uniprot
Match: UPI000B4EC9A8 (dnaJ homolog subfamily C member 7 n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4EC9A8)

HSP 1 Score: 54.3 bits (129), Expect = 5.010e-7
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   13 QAYATSNYRLAHELYTEAICVDMEDYHTNALLFANRAAALMNLQRPKDALKDCIEA 180
            +A+   NY+LA+ELYTEA+ +D  +  TNA L+ NR      L++ +DA++DC  A
Sbjct:  265 KAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEDAIEDCTNA 320
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BLAST of mRNA_L-elsbetiae_contig2037.6129.1 vs. uniprot
Match: A0A811ZGI0_NYCPR ((raccoon dog) hypothetical protein n=1 Tax=Nyctereutes procyonoides TaxID=34880 RepID=A0A811ZGI0_NYCPR)

HSP 1 Score: 53.9 bits (128), Expect = 6.810e-7
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   13 QAYATSNYRLAHELYTEAICVDMEDYHTNALLFANRAAALMNLQRPKDALKDCIEA 180
            +A+   NY+LA+ELYTEA+ +D  +  TNA L+ NR      L++  DA++DC  A
Sbjct:  237 KAFKEGNYKLAYELYTEALGIDSNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNA 292
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BLAST of mRNA_L-elsbetiae_contig2037.6129.1 vs. uniprot
Match: A0A8C0H6H3_CHEAB (DnaJ heat shock protein family (Hsp40) member C7 n=3 Tax=Testudinoidea TaxID=8486 RepID=A0A8C0H6H3_CHEAB)

HSP 1 Score: 53.9 bits (128), Expect = 6.810e-7
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   13 QAYATSNYRLAHELYTEAICVDMEDYHTNALLFANRAAALMNLQRPKDALKDCIEA 180
            +A+   NY+LA+ELYTEA+ +D  +  TNA L+ NR      L++ +DA+ DC +A
Sbjct:  255 KAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEDAIDDCTKA 310
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BLAST of mRNA_L-elsbetiae_contig2037.6129.1 vs. uniprot
Match: DNJC7_MOUSE (DnaJ homolog subfamily C member 7 n=32 Tax=Tetrapoda TaxID=32523 RepID=DNJC7_MOUSE)

HSP 1 Score: 53.9 bits (128), Expect = 6.820e-7
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   13 QAYATSNYRLAHELYTEAICVDMEDYHTNALLFANRAAALMNLQRPKDALKDCIEA 180
            +A+   NY+LA+ELYTEA+ +D  +  TNA L+ NR      L++ +DA++DC  A
Sbjct:  265 KAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRQLEDAIEDCTNA 320
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BLAST of mRNA_L-elsbetiae_contig2037.6129.1 vs. uniprot
Match: A0A8C6G5C0_MUSSI (DnaJ heat shock protein family (Hsp40) member C7 n=1 Tax=Mus spicilegus TaxID=10103 RepID=A0A8C6G5C0_MUSSI)

HSP 1 Score: 53.9 bits (128), Expect = 6.830e-7
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   13 QAYATSNYRLAHELYTEAICVDMEDYHTNALLFANRAAALMNLQRPKDALKDCIEA 180
            +A+   NY+LA+ELYTEA+ +D  +  TNA L+ NR      L++ +DA++DC  A
Sbjct:  261 KAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRQLEDAIEDCTNA 316
[Close]
BLAST of mRNA_L-elsbetiae_contig2037.6129.1 vs. uniprot
Match: A0A8D2AH28_SCIVU (J domain-containing protein n=3 Tax=Amniota TaxID=32524 RepID=A0A8D2AH28_SCIVU)

HSP 1 Score: 53.5 bits (127), Expect = 8.980e-7
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   13 QAYATSNYRLAHELYTEAICVDMEDYHTNALLFANRAAALMNLQRPKDALKDCIEA 180
            +A+   NY+LA+ELYTEA+ +D  +  TNA L+ NR      L++  DA++DC  A
Sbjct:  101 KAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTHA 156
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2037.6129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Y3_ECTSI2.050e-2481.67Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
A0A7J8G8E7_ROUAE2.590e-744.64DnaJ heat shock protein family (Hsp40) member C7 n... [more]
A0A093G2A9_DRYPU4.820e-742.86DnaJ subfamily C member 7 (Fragment) n=2 Tax=Dryob... [more]
R7VSV4_COLLI4.980e-742.86DnaJ like protein subfamily C member 7 (Fragment) ... [more]
UPI000B4EC9A85.010e-742.86dnaJ homolog subfamily C member 7 n=1 Tax=Meriones... [more]
A0A811ZGI0_NYCPR6.810e-742.86(raccoon dog) hypothetical protein n=1 Tax=Nyctere... [more]
A0A8C0H6H3_CHEAB6.810e-742.86DnaJ heat shock protein family (Hsp40) member C7 n... [more]
DNJC7_MOUSE6.820e-742.86DnaJ homolog subfamily C member 7 n=32 Tax=Tetrapo... [more]
A0A8C6G5C0_MUSSI6.830e-742.86DnaJ heat shock protein family (Hsp40) member C7 n... [more]
A0A8D2AH28_SCIVU8.980e-742.86J domain-containing protein n=3 Tax=Amniota TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2037contigL-elsbetiae_contig2037:21965..22145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue7.3e-20
Seed eggNOG ortholog2880.D7G5Y3
KEGG koko:K09523,ko:K09524,ko:K09527,ko:K09536
KEGG Pathwayko04141,ko05164,map04141,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsCOG0484@1,KOG0550@2759,KOG0713@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size181
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815840.7355905-CDS-L-elsbetiae_contig2037:21965..221451622815840.7355905-CDS-L-elsbetiae_contig2037:21965..22145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2037 21966..22145 -
1691683138.5107443-CDS-L-elsbetiae_contig2037:21965..221451691683138.5107443-CDS-L-elsbetiae_contig2037:21965..22145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2037 21966..22145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2037.6129.1prot_L-elsbetiae_contig2037.6129.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2037 21966..22145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2037.6129.1

>prot_L-elsbetiae_contig2037.6129.1 ID=prot_L-elsbetiae_contig2037.6129.1|Name=mRNA_L-elsbetiae_contig2037.6129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
QRAGQAYATSNYRLAHELYTEAICVDMEDYHTNALLFANRAAALMNLQRP
KDALKDCIEA
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mRNA from alignment at L-elsbetiae_contig2037:21965..22145-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2037.6129.1 ID=mRNA_L-elsbetiae_contig2037.6129.1|Name=mRNA_L-elsbetiae_contig2037.6129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=181bp|location=Sequence derived from alignment at L-elsbetiae_contig2037:21965..22145- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGCGCTGGGCAAGCGTACGCGACGTCTAATTACCGCCTCGCGCACGA
GCTGTACACGGAGGCGATCTGCGTGGACATGGAGGACTACCACACGAACG
CCCTCCTCTTCGCCAACCGCGCGGCGGCCCTGATGAACCTGCAAAGGCCC
AAGGACGCCCTCAAAGACTGCATCGAGGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2037:21965..22145-

>mRNA_L-elsbetiae_contig2037.6129.1 ID=mRNA_L-elsbetiae_contig2037.6129.1|Name=mRNA_L-elsbetiae_contig2037.6129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig2037:21965..22145- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGCGCTGGGCAAGCGTACGCGACGTCTAATTACCGCCTCGCGCACGA
GCTGTACACGGAGGCGATCTGCGTGGACATGGAGGACTACCACACGAACG
CCCTCCTCTTCGCCAACCGCGCGGCGGCCCTGATGAACCTGCAAAGGCCC
AAGGACGCCCTCAAAGACTGCATCGAGGCGCAGCGCGCTGGGCAAGCGTA
CGCGACGTCTAATTACCGCCTCGCGCACGAGCTGTACACGGAGGCGATCT
GCGTGGACATGGAGGACTACCACACGAACGCCCTCCTCTTCGCCAACCGC
GCGGCGGCCCTGATGAACCTGCAAAGGCCCAAGGACGCCCTCAAAGACTG
CATCGAGGCG
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