mRNA_L-elsbetiae_contig20355.6124.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20355.6124.1
Unique NamemRNA_L-elsbetiae_contig20355.6124.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig20355.6124.1 vs. uniprot
Match: D7G6Q0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q0_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 1.990e-83
Identity = 160/285 (56.14%), Postives = 188/285 (65.96%), Query Frame = 1 
Query:    1 QARTQDVFHLHQKILEHSTERLAGHAQTGLGSGRLHTPFATNFIENERKLSLTKHVKDMGLGVYLVQEHGHSKYGNRVNLELPDAEGQGGSLHCTCDVPSRFKMPCQDALAVFKEINRLDVAMKFVDDGYTLEAYRNVHANPDFPVTLPIWSELSKTNLLPPRQVQGQAGAPK--RGRPKRSRIPGANDNCQRGRXXXXXXXXXXXPAF-------HGSGSVRSHVGHLGVGGIGVPPDGGAPAPRVWGGVAAQRYSSQEPSG----SGAGVSGGQNQNLSQGSV 816
            Q R  D +HLH  I E + E+LA +A+    S  +  PFA  F+E+ER LSL KHVK +GLG YLVQEHG S+YGNRV + LPD EG+GG + CTC VPSRF + CQD+LAV K I+RLD     VD GYTL +YR +H++PD+PV LPIWSELSK +LLPPRQV  QAGAPK  RG  +RSRIPG NDNCQRGR       XXXX          HG GSVRSHVG L VGG      G  P  RVWGG+A QRY SQ+ SG    +GAG       + SQGS+
Sbjct:  342 QTREMDPYHLHIGIAEKTAEQLATNAELKKDSSAILVPFAAKFMEDERLLSLHKHVKSLGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVPSRFHLLCQDSLAVLKSIDRLDCTRAHVDGGYTLASYRALHSHPDYPVVLPIWSELSKGDLLPPRQVTRQAGAPKKKRGPRQRSRIPGRNDNCQRGRGNVAQGGXXXXXXXNAQPVPVHGMGSVRSHVGDLNVGGSA----GERPTGRVWGGLAVQRYGSQDASGRDHTAGAGAGSSAMLSQSQGSI 622
[Close]
BLAST of mRNA_L-elsbetiae_contig20355.6124.1 vs. uniprot
Match: A0A6H5K405_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K405_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 1.190e-78
Identity = 153/297 (51.52%), Postives = 181/297 (60.94%), Query Frame = 1 
Query:    1 QARTQDVFHLHQKILEHSTERLAGHAQTGLGSGRLHTPFATNFIENERKLSLTKHVKDMGLGVYLVQEHGHSKYGNRVNLELPDAEGQGGSLHCTCDVPSRFKMPCQDALAVFKEINRLDVAMKFVDDGYTLEAYRNVHANPDFPVTLPIWSELSKTNLLPPRQVQGQAGAPKRGRP--KRSRIPGANDNCQRGRXXXXXXXXXXXPAF-------------------HGSGSVRSHVGHLGVGGIGVPPDGGAPAPRVWGGVAAQRYSSQEPSGS----GAGVSGGQNQNLSQGSV 816
            Q R  D +H H +I E + E+LA +A+          PFA  F+E+ER LSL KHVK MGLG YL QEHG S+YGNRV + LPD EG+GG + CTC VP+RF   CQDALAV K I+RLD     +D  YTL +YR +H +PD+PV LPIWSELSK +LLPPRQV  QAGAPK+ R   +RSR PG NDNCQRGR       XXXX                      HG GSVRSHVG L VGG      G  P  R+WGG+A QRY SQ+ SG+    GAG       + SQGS+
Sbjct:   26 QKREMDPYHFHIEIAEKTAEQLATNAELLKDCHANLVPFAAKFMEDERLLSLNKHVKSMGLGTYLAQEHGKSQYGNRVTIVLPDTEGKGGRVECTCRVPTRFHHLCQDALAVLKSIDRLDCTRALIDSRYTLASYRVLHTHPDYPVVLPIWSELSKGDLLPPRQVTRQAGAPKKHRAPRQRSRFPGRNDNCQRGRGNVAQDGXXXXXXXXXXXXXXXXXXGNSRPVPVHGMGSVRSHVGDLNVGGSA----GERPTGRLWGGLAVQRYGSQDASGNDHAAGAGAGSCAMLSQSQGSI 318
[Close]
BLAST of mRNA_L-elsbetiae_contig20355.6124.1 vs. uniprot
Match: A0A6H5K7B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B6_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 2.890e-67
Identity = 145/356 (40.73%), Postives = 175/356 (49.16%), Query Frame = 1 
Query:   16 DVFHLHQKILEHSTERLAGHAQTGLGSGRLHTPFATNFIENERKLSLTKHVKDMGLGVYLVQEHGHSKYGNRVNLELPDAEGQGGSLHCTCDVPSRFKMPCQDALAVFKEINRLDVAMKFVDDGYTLEAYRNVHANPDFPVTLPIWSELSKTNLLPPRQVQGQAGAPK--RGRPKRSRIPGANDNCQRGRXXXXXXXXXXXP-----------------------------------------------------------------------------------AFHGSGSVRSHVGHLGVGGIGVPPDGGAPAPRVWGGVAAQRYSSQEPSG----SGAGVSGGQNQNLSQGSV 816
            D +H H  I E + E+LA +A+       +  PFA  F+E+ER +SL KHVK MGLG YLVQEHG S+YGNRV + LPD EG GG + CTC VP+RF + CQDALAV K I+RLD     +D GYTL ++R +H +PD+PV LPIWSELSK +LLPPRQV  QAGAPK  RG  +RSR PG NDNCQRGR                                                                                                 HG GSV SHVG L VGG       G    R+WGG+A QRY S++ +G    SGAG       + SQGS+
Sbjct:    2 DPYHFHIGIAEKTAEQLATNAELLKDGHAILVPFAAKFMEDERLISLNKHVKSMGLGTYLVQEHGKSQYGNRVIIVLPDTEGNGGRVECTCRVPTRFHLLCQDALAVLKSIDRLDCTRALIDSGYTLASFRVLHTHPDYPVVLPIWSELSKGDLLPPRQVTRQAGAPKKNRGPRQRSRFPGRNDNCQRGRGNVAQDGGTHPDYPVVLPIWSELSKGDLLPPRQVTRQAGAPKKNRGPRQRSRFSGRNDNCQRGRGNVAQDGXXXXXXXXXXXXXXXXXXGNSRPVPVHGMGSVGSHVGDLNVGGSAGERTTG----RLWGGLAVQRYGSEDATGRDHASGAGAGSCSMLSQSQGSI 353
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BLAST of mRNA_L-elsbetiae_contig20355.6124.1 vs. uniprot
Match: A0A6H5K6W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W8_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 6.170e-66
Identity = 126/228 (55.26%), Postives = 146/228 (64.04%), Query Frame = 1 
Query:  142 RKLSLTKHVKDMGLGVYLVQEHGHSKYGNRVNLELPDAEGQGGSLHCTCDVPSRFKMPCQDALAVFKEINRLDVAMKFVDDGYTLEAYRNVHANPDFPVTLPIWSELSKTNLLPPRQVQGQAGAPKRGRP--KRSRIPGANDNCQRGRXXXXXXXXXXXPAF-------------------HGSGSVRSHVGHLGVGGIGVPPDGGAPAPRVWGGVAAQRYSSQEPSG 762
            R    ++HVK MG+G YLVQEHG S+YGNRV + LP  EG+GG + CTC VP+RF + CQDALAV K I+RLD     +D GYTL +YR +H +PD+PV LPIWSELSK +LLPPRQV  QAGAPKR R   +RSR PG NDNCQRGR       XXXX                      HG GSVRSHVG L VGG      G  P  R+WGG+A QRY SQ+ SG
Sbjct:   13 RTRGCSQHVKSMGVGTYLVQEHGKSQYGNRVTIVLPHTEGKGGRVECTCRVPTRFHLLCQDALAVLKSIDRLDCTRALIDSGYTLASYRVLHTHPDYPVVLPIWSELSKGDLLPPRQVTRQAGAPKRNRGPRQRSRFPGRNDNCQRGRGNVAQDGXXXXXXXXXXXXXXXXXXGNSRPVPVHGMGSVRSHVGDLNVGGSA----GERPTGRLWGGLAVQRYGSQDASG 236
[Close]
BLAST of mRNA_L-elsbetiae_contig20355.6124.1 vs. uniprot
Match: A0A6H5L9F2_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9F2_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 7.880e-60
Identity = 136/297 (45.79%), Postives = 168/297 (56.57%), Query Frame = 1 
Query:    1 QARTQDVFHLHQKILEHSTERLAGHAQTGLGSGRLHTPFATNFIENERKLSLTKHVKDMGLGVYLVQEHGHSKYGNRVNLELPDAEGQGGSLHCTCDVPSRFKMPCQDALAVFKEINRLDVAMKFVDDGYTLEAYRNVHANPDFPVTLPIWSELSKTNLLPPRQVQGQAGAPK--RGRPKRSRIPGANDNCQRGRXXXXXXXXXXXPAF-------------------HGSGSVRSHVGHLGVGGIGVPPDGGAPAPRVWGGVAAQRYSSQEPSGS----GAGVSGGQNQNLSQGSV 816
            Q R  D +H H +I E + E+LA +A+       +  PFA  F+E+ER LSL   +        L +    S+YGNRV + +PD EG+GG +  TC V +RF + CQDALAV K I+RLD     +D GYTL +YR +H +PD+PV LPIWSELSK +LLPPRQV  QAG PK  RG  +RSR PG NDN QRGR        XXX                      HG GSVRSHVG L VGG      G  P  R+WGG+A QRY SQ+ SG+    GAG       + SQGS+
Sbjct:  260 QKREMDPYHFHIEIAEKTAEQLATNAELLKDCHAILVPFAAKFMEDERLLSLNTSIA-WAWAPTLFRSTAMSQYGNRVTIVMPDTEGKGGRVESTCRVSARFHLLCQDALAVLKSIDRLDCTRALIDSGYTLASYRVLHTHPDYPVVLPIWSELSKGDLLPPRQVTRQAGTPKKNRGPRQRSRFPGRNDNFQRGRGNVAQDGGXXXXXXXXXXXXXXXXXGNSRPVPVHGMGSVRSHVGDLNVGGSA----GERPTGRLWGGLAVQRYGSQDASGNDHAAGAGAGSCSMLSQSQGSI 551
[Close]
BLAST of mRNA_L-elsbetiae_contig20355.6124.1 vs. uniprot
Match: A0A6H5K4J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J8_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 6.410e-54
Identity = 110/226 (48.67%), Postives = 132/226 (58.41%), Query Frame = 1 
Query:  157 TKHVKDMGLGVYLVQEHGHSKYGNRVNLELPDAEGQGGSLHCTCDVPSRFKMPCQDALAVFKEINRLDVAMKFVDDGYTLEAYRNVHANPDFPVTLPIWSELSKTNLLPPRQVQGQAGAPK--RGRPKRSRIPGANDNCQRGRXXXXXXXXXXXPAFHGSGSVRSHVGHLGVGGIGVPPDGGAPAPRVWGGVAAQRYSSQEPSG----SGAGVSGGQNQNLSQGSV 816
            +KHVK MGLG YLVQEHG S+YGNRV + LPD EG+GG + CTC VP+RF + CQDALAV K I+RLD     +D GYTL +YR +H++PD+ V L IWSELSK +LLPPRQV  QAGAPK  RG  +RSR PG NDN                                  G   + P       R+WG +A QRY SQ  SG    +GAG   G   + SQGS+
Sbjct:    9 SKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGCVKCTCRVPTRFHLLCQDALAVLKSIDRLDCTRALIDSGYTLASYRVLHSHPDYLVVLTIWSELSKGDLLPPRQVTRQAGAPKKNRGPRQRSRFPGRNDNX--------------------------------AGAATLSPS------RLWGRLAVQRYGSQGASGLDHAAGAGARSGAMLSQSQGSI 196
[Close]
BLAST of mRNA_L-elsbetiae_contig20355.6124.1 vs. uniprot
Match: A0A6H5KSL9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL9_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 4.860e-53
Identity = 110/202 (54.46%), Postives = 126/202 (62.38%), Query Frame = 1 
Query:  220 YGNRVNLELPDAEGQGGSLHCTCDVPSRFKMPCQDALAVFKEINRLDVAMKFVDDGYTLEAYRNVHANPDFPVTLPIWSELSKTNLLPPRQVQGQAGAPK--RGRPKRSRIPGANDNCQRGRXXXXXXXXXXXPAF-------------------HGSGSVRSHVGHLGVGGIGVPPDGGAPAPRVWGGVAAQRYSSQEPSG 762
            +G RV + LP+ EG GG + CTC VP+RF + CQDALAV K INRLD     +D GYTL +YR +H +PD+PV LPIWSELSK +LLPPRQV  QAGAPK  RG  +RSR PG NDNCQRGR       XXXX                      HG GSVRSHVG L VGG      G  P  R+WGG+A QRY SQ+ SG
Sbjct:   19 HGYRVTIVLPETEGNGGRVECTCRVPTRFHLLCQDALAVLKSINRLDCTRALIDSGYTLASYRVLHTHPDYPVVLPIWSELSKGDLLPPRQVTRQAGAPKKNRGPRQRSRFPGRNDNCQRGRGNVAQDGXXXXXXXXXXXXXXXXXXGNSRPVPVHGMGSVRSHVGDLNVGGSA----GERPTGRLWGGLAVQRYGSQDASG 216
[Close]
BLAST of mRNA_L-elsbetiae_contig20355.6124.1 vs. uniprot
Match: D7FMJ7_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ7_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 1.890e-48
Identity = 115/231 (49.78%), Postives = 135/231 (58.44%), Query Frame = 1 
Query:  202 EHGHSKYGNRVNLELPDAEGQGGSLHCTCDVPSRFKMPCQDALAVFKEINRLDVAMKFVDDGYTLEAYRNVHANPDFPVTLPIWSELSKTNLLPPRQVQGQAGAPK--RGRPKRSRIPGANDNCQRGRXXXXXXXXXXX--------------------PAFHGSGSVRSHVGHLGVGGIGVPPDGGAPAPRVWGGVAAQRYSSQEPSGS--GAGVSGGQNQNLS--QGSV 816
            EHG S+YGNRV + LPD EG+GG + CTC +PSRF +  QD LAV K INRLD     VD G+TL + R +H++PD+PV LPIWSELSK +LLPPRQV  QAGAPK  RG  +RSRIPG N NCQRGR          X                    P +   GS RSHVG L VG       G  P  R+WG +A QRY SQ+ SG    AG   G +  LS  QGS+
Sbjct:  246 EHGKSQYGNRVTIVLPDTEGKGGRVECTCSIPSRFYLLYQDTLAVLKSINRLDCTRALVDSGHTLASNRALHSHPDYPVVLPIWSELSKGDLLPPRQVTRQAGAPKKKRGPRQRSRIPGRN-NCQRGRGNVAQGGSGRXXXXXXXXXXXXXXXGNAQPVPVYE-MGSARSHVGDLNVG----VSAGERPTGRLWGWLAVQRYGSQDASGRDHAAGPGAGSSAMLSGSQGSI 470
[Close]
BLAST of mRNA_L-elsbetiae_contig20355.6124.1 vs. uniprot
Match: A0A6H5KA30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA30_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.980e-46
Identity = 110/205 (53.66%), Postives = 125/205 (60.98%), Query Frame = 1 
Query:  157 TKHVKDMGLGVYLVQEHGHSKYGNRVNLELPDAEGQGGSLHCTCDVPSRFKMPCQDALAVFKEINRLDVAMKFVDDGYTLEAYRNVHANPDFPVTLPIWSELSKTNLLPPRQVQGQAGAPKRGRPKRSRIPGANDNCQRGRXXXXXXXXXXXPA---FHGSGSVRSHVGHLGVGGIGVPPDGGAPAPRVWGGVAAQRYSSQEPSG 762
            +KHVK MGLG YLVQEHG S+YGNRV + LPD                 F + CQDAL V K I+RLD     +D GYTL +YR +H +PD+PV LPIWSE SK +LLPPRQV  QAGAPK+ R  R    G         XXXXXXXXXX       HG GSVRSHVG L VGG      G  P  R+WGG+A QRY SQ+ SG
Sbjct:    9 SKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDT----------------FHVLCQDALVVLKSIDRLDCTRALIDSGYTLASYRVLHTHPDYPVVLPIWSEPSKGDLLPPRQVTRQAGAPKKNRGPRQPQDGXXXXXXXXXXXXXXXXXXXPSQPVPVHGMGSVRSHVGDLNVGGSA----GEQPTGRLWGGLAVQRYGSQDASG 193
[Close]
BLAST of mRNA_L-elsbetiae_contig20355.6124.1 vs. uniprot
Match: A0A6H5JJ17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ17_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 8.870e-44
Identity = 98/206 (47.57%), Postives = 116/206 (56.31%), Query Frame = 1 
Query:  238 LELPDAEGQ-GGSLHCTCDVPSRFKMPCQDALAVFKEINRLDVAMKFVDDGYTLEAYRNVHANPDFPVTLPIWSELSKTNLLPPRQVQGQAGAPKRGRPKRSRIPGANDNCQRGRXXXXXXXXXXXPA---------------FHGSGSVRSHVGHLGVGGIGVPPDGGAPAPRVWGGVAAQRYSSQEPSGSGAGVSGGQNQNLSQ 807
            L  P A  + GG + CTC VPSRF + CQDALAV      LD     +D GYTL ++R +H+NPD+PV LPIWSELSK +LLPPRQV GQAGAPK+G  +R+R PG NDNCQRG                              HG GSVRSHVG L +GG      G  P  RV GG+A +RYSSQ+          G +  LSQ
Sbjct:   44 LPRPGARQEPGGRVECTCRVPSRFHLLCQDALAV------LDCTRALIDSGYTLASFRGIHSNPDYPVVLPIWSELSKGDLLPPRQVTGQAGAPKKGARQRARFPGLNDNCQRGGGPVARDAGVRGGGGSAEXXXXXNAQPLPVHGMGSVRSHVGDLNIGGSA----GERPPSRVCGGLAVERYSSQDAPRRDNAAGAGSSAVLSQ 239
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20355.6124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G6Q0_ECTSI1.990e-8356.14MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K405_9PHAE1.190e-7851.52Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7B6_9PHAE2.890e-6740.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6W8_9PHAE6.170e-6655.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9F2_9PHAE7.880e-6045.79MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K4J8_9PHAE6.410e-5448.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL9_9PHAE4.860e-5354.46SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FMJ7_ECTSI1.890e-4849.78MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KA30_9PHAE2.980e-4653.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ17_9PHAE8.870e-4447.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20355contigL-elsbetiae_contig20355:143..2528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1127
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20355.6124.1prot_L-elsbetiae_contig20355.6124.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20355 1030..2235 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815840.3620653-UTR-L-elsbetiae_contig20355:142..3001622815840.3620653-UTR-L-elsbetiae_contig20355:142..300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20355 143..300 +
1691683138.28483-UTR-L-elsbetiae_contig20355:142..3001691683138.28483-UTR-L-elsbetiae_contig20355:142..300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20355 143..300 +
1622815840.3774757-UTR-L-elsbetiae_contig20355:1013..10291622815840.3774757-UTR-L-elsbetiae_contig20355:1013..1029Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20355 1014..1029 +
1691683138.2940402-UTR-L-elsbetiae_contig20355:1013..10291691683138.2940402-UTR-L-elsbetiae_contig20355:1013..1029Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20355 1014..1029 +
1622815840.413836-UTR-L-elsbetiae_contig20355:2235..25281622815840.413836-UTR-L-elsbetiae_contig20355:2235..2528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20355 2236..2528 +
1691683138.3244991-UTR-L-elsbetiae_contig20355:2235..25281691683138.3244991-UTR-L-elsbetiae_contig20355:2235..2528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20355 2236..2528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815840.388825-CDS-L-elsbetiae_contig20355:1029..11981622815840.388825-CDS-L-elsbetiae_contig20355:1029..1198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20355 1030..1198 +
1691683138.3044045-CDS-L-elsbetiae_contig20355:1029..11981691683138.3044045-CDS-L-elsbetiae_contig20355:1029..1198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20355 1030..1198 +
1622815840.3991408-CDS-L-elsbetiae_contig20355:1744..22351622815840.3991408-CDS-L-elsbetiae_contig20355:1744..2235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20355 1745..2235 +
1691683138.314517-CDS-L-elsbetiae_contig20355:1744..22351691683138.314517-CDS-L-elsbetiae_contig20355:1744..2235Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20355 1745..2235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20355.6124.1

>prot_L-elsbetiae_contig20355.6124.1 ID=prot_L-elsbetiae_contig20355.6124.1|Name=mRNA_L-elsbetiae_contig20355.6124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
MGLGVYLVQEHGHSKYGNRVNLELPDAEGQGGSLHCTCDVPSRFKMPCQD
ALAVFKEINRLDVAMKFVDDGYTLEAYRNVHANPDFPVTLPIWSELSKTN
LLPPRQVQGQAGAPKRGRPKRSRIPGANDNCQRGRGGGGRGAAAAAPAFH
GSGSVRSHVGHLGVGGIGVPPDGGAPAPRVWGGVAAQRYSSQEPSGSGAG
VSGGQNQNLSQGSVVDITG*
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mRNA from alignment at L-elsbetiae_contig20355:143..2528+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20355.6124.1 ID=mRNA_L-elsbetiae_contig20355.6124.1|Name=mRNA_L-elsbetiae_contig20355.6124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2386bp|location=Sequence derived from alignment at L-elsbetiae_contig20355:143..2528+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCACGGACGCAAGACGTGTTTCACCTGCACCAGAAGATCCTGGAGCA
CAGCACGGAGAGGCTCGCGGGGCATGCCCAAACGGGCTTGGGCTCCGGTC
GCCTCCACACTCCCTTCGCGACGAACTTCATCGAGAACGAAAGGAAGCTG
AGTCTGACGTGAGTCGTGCGTCTTGCGTCTGTTTCTTTGTGGTCGCTCAG
GTGCCGTGTCACCGCATGTGACGGTATGTTGATGTTTGGGTGCTTGTTCA
CTCTAGTGTCGGCTTCCCAGTTGGTGAATTCATTTGTAGCATTTGGGCGC
ATTGGCCACCAAAACACACATACGAAGCACCTCAGCCGAAACAGTCCTTG
CAAATGGGGCTACAATCGCTACCCAAGGGTATGCGGGAGATGTACTGATG
TCATGGCGGCTTCGGAATCGTCAGCACCCAAGAGGTTTCCTTCTACTCTA
CTGCTGTACTGTCATTGCAAACGATTTCCCTTCTCTCCGTCCCCTATATC
CTAGCATATGATGGAAGGACGTCTCTCTTTGTGAACACTCAAAACTGATC
ATTGCTTGAGCGCGGAATATTGTGTTGCTCCGCCCTGCATCTCATGACGA
TGCGCACATGCTGTGTGCATCTGAGACGGATGTGCTTGCCGCATTGCCAC
ACGGGCTGGATTCCATCGTGTTTGGCCTGCTTCACGCCCGAATATTTGAA
CTTCGACACCTTCCTGCGCCAGTTTTGTCATGCCCGTTTCCTGCTGGCTC
ATTTTTGTCGTACTGTGCGATATTGACCCCCGCTTGTCGCCGCATGTACG
TACTCACTCACATGTTGGTGTACTATTTTCTGTTTTCCCCCATGACATTC
GTGTGCCCCCCTGTTCTACAGCAAGCACGTCAAAGACATGGGGCTGGGTG
TCTATCTGGTCCAAGAACACGGCCACAGCAAGTACGGCAACAGGGTCAAC
CTCGAGCTGCCGGATGCCGAAGGACAAGGTGGCTCCCTTCACTGCACCTG
CGATGTCCCTTCAAGATTCAAGATGCCGTGTCAAGACGCACTGGCCGTCT
TCAAAGGTGAGACACTGTGTGGGCCTCACCCTGGATTTCCCACCTTTGGA
CGATTGCATAAGTGCCTGAACTTGTTCTGGACTTCATACCCCAGCAAGAG
TTTTCAGGTGTGTGCCTGTGTACCGTGTTGCCTTTGGCAGTTTCCAACAA
TTTTGAGTCTGCCTTGCGGGCAACGGGGTTGTCCCCTCTTATAGCGGTGG
CCTTGGGTCCAGAGGTTCACGTAAGGTGATCTCCCTCCGGCGCGCATCAC
CTCCGCACGGGACAAAGAAAGCAACATAGTTTTGACCGCTGGTGAGAGCA
TGCCGGTCGCGTGGCTGTACATACCCACAGGTCGATGGTAACACGGTAAC
GTCCCGTACCGCCGCCAACGCTCTTGGTTCTTGCTGGATTGGGGAAACGT
TCGATTGTTCCTGTCACGTATCGACGCATGCTCTGATTGGCGGTGTCCTG
TGGATACGGTACACACCACGTTTGGTAGGCATGCCCACAGGCCTGTTGAC
CCCCCAACCCGTGAACGTTTCCCCACCTTTCTTGGCTGCAAAAACGCGAC
AGAGATCAACCGACTCGATGTGGCCATGAAGTTCGTTGACGACGGGTACA
CCCTAGAGGCCTACAGGAACGTCCACGCTAACCCCGACTTCCCGGTGACA
CTGCCCATCTGGTCCGAGCTGTCCAAGACCAACCTCCTGCCCCCCCGTCA
AGTGCAAGGCCAAGCTGGTGCTCCGAAGAGGGGCCGCCCGAAGCGGTCGC
GCATCCCCGGGGCTAACGACAACTGCCAGCGTGGCCGCGGCGGCGGTGGT
CGCGGCGCTGCCGCTGCCGCCCCCGCGTTCCACGGGAGTGGCAGCGTCCG
GAGCCATGTGGGACATCTCGGCGTCGGAGGCATCGGAGTTCCCCCGGACG
GCGGGGCACCCGCGCCAAGGGTGTGGGGGGGGGTCGCGGCTCAGCGCTAC
TCTTCCCAAGAGCCCAGTGGCTCTGGAGCGGGGGTAAGCGGCGGGCAGAA
TCAAAACCTATCCCAAGGCTCTGTTGTCGATATCACGGGCTGATGATTGA
ACAGTTTCGTGTTATCTCCTAGTTTTGGTTGTAGGAAACGCCGAAAAAGC
AGGCGGAGCTCATGCAATATTGTTAGATGCAAGTTGCGAGGATGCAAAGT
CTTCAAGATGGGTGGCGGGAGGGGAGGTCGCACACCGCCGGCAAGGAGTA
CTGAAACGCATGACACGCAACCGCTCTGCTTCAGTCGCGGCTGTTCCCAG
GCCGGCAAGAGGCAGACATGACGCAATGTTGCTGAAAAATGCGTCGCCGG
TGGCGGTGGCGTTGCATGTTATTGAAGGGGTTGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20355:143..2528+

>mRNA_L-elsbetiae_contig20355.6124.1 ID=mRNA_L-elsbetiae_contig20355.6124.1|Name=mRNA_L-elsbetiae_contig20355.6124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig20355:143..2528+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCTGGGTGTCTATCTGGTCCAAGAACACGGCCACAGCAAGTACGG
CAACAGGGTCAACCTCGAGCTGCCGGATGCCGAAGGACAAGGTGGCTCCC
TTCACTGCACCTGCGATGTCCCTTCAAGATTCAAGATGCCGTGTCAAGAC
GCACTGGCCGTCTTCAAAGATGGGGCTGGGTGTCTATCTGGTCCAAGAAC
ACGGCCACAGCAAGTACGGCAACAGGGTCAACCTCGAGCTGCCGGATGCC
GAAGGACAAGGTGGCTCCCTTCACTGCACCTGCGATGTCCCTTCAAGATT
CAAGATGCCGTGTCAAGACGCACTGGCCGTCTTCAAAGAGATCAACCGAC
TCGATGTGGCCATGAAGTTCGTTGACGACGGGTACACCCTAGAGGCCTAC
AGGAACGTCCACGCTAACCCCGACTTCCCGGTGACACTGCCCATCTGGTC
CGAGCTGTCCAAGACCAACCTCCTGCCCCCCCGTCAAGTGCAAGGCCAAG
CTGGTGCTCCGAAGAGGGGCCGCCCGAAGCGGTCGCGCATCCCCGGGGCT
AACGACAACTGCCAGCGTGGCCGCGGCGGCGGTGGTCGCGGCGCTGCCGC
TGCCGCCCCCGCGTTCCACGGGAGTGGCAGCGTCCGGAGCCATGTGGGAC
ATCTCGGCGTCGGAGGCATCGGAGTTCCCCCGGACGGCGGGGCACCCGCG
CCAAGGGTGTGGGGGGGGGTCGCGGCTCAGCGCTACTCTTCCCAAGAGCC
CAGTGGCTCTGGAGCGGGGGTAAGCGGCGGGCAGAATCAAAACCTATCCC
AAGGCTCTGTTGTCGATATCACGGGCTGAAGATCAACCGACTCGATGTGG
CCATGAAGTTCGTTGACGACGGGTACACCCTAGAGGCCTACAGGAACGTC
CACGCTAACCCCGACTTCCCGGTGACACTGCCCATCTGGTCCGAGCTGTC
CAAGACCAACCTCCTGCCCCCCCGTCAAGTGCAAGGCCAAGCTGGTGCTC
CGAAGAGGGGCCGCCCGAAGCGGTCGCGCATCCCCGGGGCTAACGACAAC
TGCCAGCGTGGCCGCGGCGGCGGTGGTCGCGGCGCTGCCGCTGCCGCCCC
CGCGTTCCACGGGAGTGGCAGCGTCCGGAGCCATGTGGGACATCTCGGCG
TCGGAGGCATCGGAGTTCCCCCGGACGGCGGGGCACCCGCGCCAAGGGTG
TGGGGGGGGGTCGCGGCTCAGCGCTACTCTTCCCAAGAGCCCAGTGGCTC
TGGAGCGGGGGTAAGCGGCGGGCAGAATCAAAACCTATCCCAAGGCTCTG
TTGTCGATATCACGGGCTGA
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