mRNA_L-elsbetiae_contig20352.6122.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20352.6122.1
Unique NamemRNA_L-elsbetiae_contig20352.6122.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: D8LIQ1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ1_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 3.010e-72
Identity = 102/111 (91.89%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 GKECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAKPSLNNRY 333
            GK+CG++CDNNR+YVSGLPTTITE DLVEKF+TIGIIARIRQ KRGYKDQWPFSVRIYKDD TGKPKGDCIIKYEEPNSAHAAL+WFDGIDFKGGKIGVAMAAKPSLNNRY
Sbjct:   49 GKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQ-KRGYKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 158          
BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A6H5L8L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 9.940e-68
Identity = 99/114 (86.84%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 GKECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQ---QKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAKPSLNNRY 333
            GK+CG++CDNNR+YVSGLPTTITE DLV+KF+TIGIIARIRQ    KRGYKDQWPFSVRIYKD  TGKPKGDCIIKYEEPNSAHAA++WFDGIDFKGGKIGVAMAAKPSLNNRY
Sbjct:  233 GKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQARASKRGYKDQWPFSVRIYKDSNTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 346          
BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A803KS81_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KS81_CHEQI)

HSP 1 Score: 123 bits (308), Expect = 5.970e-33
Identity = 55/103 (53.40%), Postives = 78/103 (75.73%), Query Frame = 1
Query:    4 KECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 312
            + CG+ CDN+RIY+S LP  +   +L E F +IGI+ARI+Q KRGYKDQWP+S+++Y DD+ GK KGD ++ YE+P++AH+A  +F+G D +G KI V MA K
Sbjct:  104 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ-KRGYKDQWPYSIKLYTDDS-GKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEK 204          
BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A803LCU5_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCU5_CHEQI)

HSP 1 Score: 123 bits (308), Expect = 1.130e-31
Identity = 55/103 (53.40%), Postives = 78/103 (75.73%), Query Frame = 1
Query:    4 KECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 312
            + CG+ CDN+RIY+S LP  +   +L E F +IGI+ARI+Q KRGYKDQWP+S+++Y DD+ GK KGD ++ YE+P++AH+A  +F+G D +G KI V MA K
Sbjct:  203 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ-KRGYKDQWPYSIKLYTDDS-GKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEK 303          
BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A9T0V1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T0V1_PHYPA)

HSP 1 Score: 120 bits (301), Expect = 1.030e-30
Identity = 54/103 (52.43%), Postives = 79/103 (76.70%), Query Frame = 1
Query:    4 KECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 312
            + CG+ CDN RIY+SGLP  + E +L E F  IG +AR++Q KRGYKDQWP++++IY+D++ GK KGD ++ YE+P++AH+A  +F+  + +G KI VAMAAK
Sbjct:  200 ENCGDSCDNARIYISGLPLDVKEDELQELFGGIGQVARVKQ-KRGYKDQWPYNIKIYQDES-GKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 300          
BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A2K1JP98_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JP98_PHYPA)

HSP 1 Score: 120 bits (301), Expect = 1.090e-30
Identity = 55/103 (53.40%), Postives = 79/103 (76.70%), Query Frame = 1
Query:    4 KECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 312
            + CG+ CDN RIY+SGLP  + E +L E F  IG +ARI+Q KRGYKDQWP++++IY+D++ GK KGD ++ YE+P++AH+A  +F+  + +G KI VAMAAK
Sbjct:  203 ENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQ-KRGYKDQWPYNIKIYQDES-GKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 303          
BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: UPI000905CCC9 (transcription initiation factor TFIID subunit 15b-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000905CCC9)

HSP 1 Score: 120 bits (300), Expect = 1.930e-30
Identity = 55/103 (53.40%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    4 KECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 312
            + CG+ CDN+RIY+S LP  +T  +L E F +IG +ARI+Q KRGYKDQWP+S++IY D+  G  KGD ++ YE+P++AH+A  +F+  DF+G KI VAMA K
Sbjct:  207 EHCGDSCDNSRIYISNLPPDVTIEELQELFGSIGQVARIKQ-KRGYKDQWPWSIKIYTDEK-GNNKGDAVLSYEDPSAAHSAGGFFNNYDFRGYKISVAMAEK 307          
BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A2R5H0Z6_9STRA (RNA-binding protein, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H0Z6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.930e-30
Identity = 55/97 (56.70%), Postives = 73/97 (75.26%), Query Frame = 1
Query:   25 DNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAKP 315
            DN RIY+SGLP+  TE +L + F  +G+IAR ++QKRGY DQWP+ + IY DD  GKPKGD +I YE+PN+A +A ++F+G +FKG KI V  AAKP
Sbjct:  220 DNTRIYISGLPSDTTEQELADHFGGLGVIAR-KKQKRGYPDQWPYKITIYTDDQ-GKPKGDAVIGYEDPNAAQSAPEFFNGTEFKGCKINVESAAKP 314          
BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: A0A176VKP4_MARPO (RRM domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VKP4_MARPO)

HSP 1 Score: 118 bits (295), Expect = 3.050e-30
Identity = 56/102 (54.90%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    7 ECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 312
            ECG+ CDN RIY+SGLP  +T  +L E F  IG +ARI+Q KRGYKDQWP++V+IY D+A GK KGD ++ YE+P++AH+A  +F+    +G KI V MA K
Sbjct:  142 ECGDTCDNTRIYISGLPLDVTVDELRELFGGIGQVARIKQ-KRGYKDQWPWNVKIYTDEA-GKNKGDAVLTYEDPSAAHSAGSFFNDHSLRGNKIKVTMAEK 241          
BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Match: UPI000E6FE8CC (transcription initiation factor TFIID subunit 15b-like n=2 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FE8CC)

HSP 1 Score: 121 bits (303), Expect = 3.370e-30
Identity = 55/102 (53.92%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    7 ECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQWPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVAMAAK 312
            +CG++CDN+RIY+S LP  +T  +L E F  IG IARI+Q KRGYKDQWP+++++Y DD+ GKPKGD ++ YE+P++AHAA  +++  + +G KI V MAAK
Sbjct:  316 KCGDNCDNSRIYISNLPLDVTTDELRELFGGIGQIARIKQ-KRGYKDQWPWNIKLYTDDS-GKPKGDGVLSYEDPSAAHAAGGFYNNHELRGNKISVTMAAK 415          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20352.6122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIQ1_ECTSI3.010e-7291.89RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L8L8_9PHAE9.940e-6886.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A803KS81_CHEQI5.970e-3353.40RRM domain-containing protein n=1 Tax=Chenopodium ... [more]
A0A803LCU5_CHEQI1.130e-3153.40RRM domain-containing protein n=1 Tax=Chenopodium ... [more]
A9T0V1_PHYPA1.030e-3052.43Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A2K1JP98_PHYPA1.090e-3053.40Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
UPI000905CCC91.930e-3053.40transcription initiation factor TFIID subunit 15b-... [more]
A0A2R5H0Z6_9STRA1.930e-3056.70RNA-binding protein, putative n=1 Tax=Hondaea ferm... [more]
A0A176VKP4_MARPO3.050e-3054.90RRM domain-containing protein n=2 Tax=Marchantia p... [more]
UPI000E6FE8CC3.370e-3053.92transcription initiation factor TFIID subunit 15b-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20352contigL-elsbetiae_contig20352:155..1409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.1
Seed ortholog evalue2.6e-55
Seed eggNOG ortholog2880.D8LIQ1
KEGG koko:K13098,ko:K14651
KEGG Pathwayko03022,ko05202,map03022,map05202
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA binding
EggNOG OGsKOG1995@1,KOG1995@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03041
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815840.267842-CDS-L-elsbetiae_contig20352:154..2801622815840.267842-CDS-L-elsbetiae_contig20352:154..280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20352 155..280 +
1691683138.239496-CDS-L-elsbetiae_contig20352:154..2801691683138.239496-CDS-L-elsbetiae_contig20352:154..280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20352 155..280 +
1622815840.2790852-CDS-L-elsbetiae_contig20352:1199..14091622815840.2790852-CDS-L-elsbetiae_contig20352:1199..1409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20352 1200..1409 +
1691683138.2507946-CDS-L-elsbetiae_contig20352:1199..14091691683138.2507946-CDS-L-elsbetiae_contig20352:1199..1409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20352 1200..1409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20352.6122.1prot_L-elsbetiae_contig20352.6122.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20352 155..1409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20352.6122.1

>prot_L-elsbetiae_contig20352.6122.1 ID=prot_L-elsbetiae_contig20352.6122.1|Name=mRNA_L-elsbetiae_contig20352.6122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
GKECGEDCDNNRIYVSGLPTTITEADLVEKFATIGIIARIRQQKRGYKDQ
WPFSVRIYKDDATGKPKGDCIIKYEEPNSAHAALKWFDGIDFKGGKIGVA
MAAKPSLNNRY*
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mRNA from alignment at L-elsbetiae_contig20352:155..1409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20352.6122.1 ID=mRNA_L-elsbetiae_contig20352.6122.1|Name=mRNA_L-elsbetiae_contig20352.6122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1255bp|location=Sequence derived from alignment at L-elsbetiae_contig20352:155..1409+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAAGGAGTGCGGCGAAGACTGCGACAACAACCGCATCTACGTGTCCGG CCTGCCCACCACCATCACGGAGGCTGACCTCGTGGAGAAGTTCGCAACCA TCGGCATCATCGCCCGCATCAGACAGGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGCCCCTCCCATTATTGGCTTATTCGTCGTCTGCCCCGCTAGCCT CCATCCTCCACTACGACTAGCTAGACGACCCAACCGGGGTCACACAGGAG GTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGATAGCCTGTGGCCAC GGCACCGACCTTGTAGCATGTGTTGGATGAAAACAATACGGACAAAATAA ATATATTTATCAATAGTGTAACTTTTTATAGGTAATGGCCACTGGATCGA CCGACCGCATCACGCGTTGGATGGGTACAGCACGGACAAAGGAAGGTACT GACTACTGGGCTACTAATGAAAATCGGGACAGTTCTCAATGTGATTTGAG AAAAAAAAAGAAAGAGGAATCGGGACGGTTCGTGATGTGATTTGAGAACA AAAAAAAGAGAATTCCGGACGGTTCGTGAGAAAAAAGAGAAAGAAATGAG GAATCGGGACGGTTCTTATTGTGATGTGAGAACAAAAAAAAGAGAGATCG GGACGGTTATTAATGTGATGATTTAAGAAAAAGGAAGGAAAAAAAGAGAA ATTGGGAGGGTTATTAAGGTGATGATTTAAGAAAAAGGAAGGAAAAAAAG AGAAATCGGGATGCCGTCGCACGCCACGCCCGACGCATGCCGTGCTCTCA AATGTCAGGCTGAGCTTTGATTTTAGAGCTTTTTCCCCCTCGCTGCGCAA CACTGCTCATTACGAACTGTCGATCGTCGTCACCATTGTTTTTTGACCGT TTTGCTGGGGGGGCAGGAGAAAACCTCGCTAAATTGAATCGATTTGAGAA GCCTCGCGCTAAATTCGTCCCATCCATCGATCGATCTTCGCCGTCGTCGC GTTTTTCTTTTTTTTTTATCCGCCGTTTCTCTTTTTGGGGGAGAGCAGAA GAGGGGCTACAAGGACCAGTGGCCGTTCTCCGTGCGCATCTACAAGGACG ACGCCACCGGCAAGCCCAAGGGTGACTGCATCATCAAATACGAGGAGCCC AACTCCGCCCACGCCGCCCTCAAGTGGTTCGACGGCATCGACTTCAAGGG AGGCAAGATCGGCGTCGCCATGGCCGCGAAGCCCTCCCTCAACAACCGGT ACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20352:155..1409+

>mRNA_L-elsbetiae_contig20352.6122.1 ID=mRNA_L-elsbetiae_contig20352.6122.1|Name=mRNA_L-elsbetiae_contig20352.6122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig20352:155..1409+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAAGGAGTGCGGCGAAGACTGCGACAACAACCGCATCTACGTGTCCGG
CCTGCCCACCACCATCACGGAGGCTGACCTCGTGGAGAAGTTCGCAACCA
TCGGCATCATCGCCCGCATCAGACAGGGCAAGGAGTGCGGCGAAGACTGC
GACAACAACCGCATCTACGTGTCCGGCCTGCCCACCACCATCACGGAGGC
TGACCTCGTGGAGAAGTTCGCAACCATCGGCATCATCGCCCGCATCAGAC
AGCAGAAGAGGGGCTACAAGGACCAGTGGCCGTTCTCCGTGCGCATCTAC
AAGGACGACGCCACCGGCAAGCCCAAGGGTGACTGCATCATCAAATACGA
GGAGCCCAACTCCGCCCACGCCGCCCTCAAGTGGTTCGACGGCATCGACT
TCAAGGGAGGCAAGATCGGCGTCGCCATGGCCGCGAAGCCCTCCCTCAAC
AACCGGTACTGACAGAAGAGGGGCTACAAGGACCAGTGGCCGTTCTCCGT
GCGCATCTACAAGGACGACGCCACCGGCAAGCCCAAGGGTGACTGCATCA
TCAAATACGAGGAGCCCAACTCCGCCCACGCCGCCCTCAAGTGGTTCGAC
GGCATCGACTTCAAGGGAGGCAAGATCGGCGTCGCCATGGCCGCGAAGCC
CTCCCTCAACAACCGGTACTGA
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