mRNA_L-elsbetiae_contig2033.6115.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2033.6115.1
Unique NamemRNA_L-elsbetiae_contig2033.6115.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2033.6115.1 vs. uniprot
Match: D8LU89_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU89_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 7.000e-96
Identity = 162/241 (67.22%), Postives = 177/241 (73.44%), Query Frame = 1 
Query:    1 SMDWSWSSEFGSKHDASRG-EVYMSLDVLNEVWTAEMAFLRDMYLLDADFFRFVWGLLQQREAAGPATATLAVHAGTKVAVELVAHARASTCVSPWCKRLSELAEAHPHAADNVLALLATGRRSGSQAGYLRELLVSCPRASTRLAFEHLAVAAVAASSNPSKNGGGQGPTADWEGEPQEE----------------------------VGRQTAALSRVLLDLLRDESRGAARGDSPGGL 636
            SMDWSW++EFG++HD S+G EVYMSLDVLN+VWTAEM+FLRDMYLLDADFFRFVWGLLQQ EAAGPATATLA HAGTKVAVE+VAHARAS+CV+PWCKRLS+LA AH HAADNVLALLA GRR+GS AGYLRELLVSCPRASTRLAFEHLAV AV ASSN                                                 V +QT+ALSRVLLDLL DES G+ARG S GGL
Sbjct:    3 SMDWSWNAEFGARHDVSQGREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAVEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAVAPASVAVVDQQTSALSRVLLDLLADESYGSARGGSLGGL 243
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BLAST of mRNA_L-elsbetiae_contig2033.6115.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 1.930e-84
Identity = 162/241 (67.22%), Postives = 174/241 (72.20%), Query Frame = 1 
Query:    1 SMDWSWSSEFGSKHDASRG-EVYMSLDVLNEVWTAEMAFLRDMYLLDADFFRFVWGLLQQREAAGPATATLAVHAGTKVAVELVAHARASTCVSPWCKRLSELAEAHPHAADNVLALLATGRRSGSQAGYLRELLVSCPRASTRLAFEHLAVAAVAASSNPSKNGGGQGPTADWEGEPQEE----------------------------VGRQTAALSRVLLDLLRDESRGAARGDSPGGL 636
            SMDWS SSEFG++HD S+G EVYMSLDVLN+VWTAEM+FLRDMYLLDADFFRFVWGLLQQ EAAGPATATLA HAGTKVAVE+VAHARAS+CV+PWCKRLS+LA AH HAADNVLALLA GRR+GS AGYLRELLVSCPR STRLAFEHLAV AV ASSN                                                 V +QT ALSRVLLDLL DES G+ARG S GGL
Sbjct: 2400 SMDWSLSSEFGARHDVSQGREVYMSLDVLNQVWTAEMSFLRDMYLLDADFFRFVWGLLQQPEAAGPATATLAAHAGTKVAVEMVAHARASSCVAPWCKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRTSTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAPASVAVVDQQTLALSRVLLDLLADESYGSARGASLGGL 2640
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BLAST of mRNA_L-elsbetiae_contig2033.6115.1 vs. uniprot
Match: A0A7S2RJQ3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJQ3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.530e-8
Identity = 55/180 (30.56%), Postives = 74/180 (41.11%), Query Frame = 1 
Query:   67 MSLDVLNEVWTAEMAFLRDMYLLDADFFRFVWGLLQ---------------------QREAAGPATATL-----AVHAGTKVAVELVAHARASTCVSPWCKRLSELAE---------------------AHPHAADNVLALLATGRRSGSQAGYLRELLVSCPRASTRLAFEHLAVAAVA 465
            M+  V   VW   +AFL D +  + D FRF+W ++                       REA  P    L     A   G +  V++VAHARA +CV  WC +L  LA+                     A PH  D  +A L   R S    G+L ++LV CP  S++ AF HL    VA
Sbjct:  174 MTPAVQRAVWDESLAFLFDRHTFNVDHFRFLWHIVDCTIPAASPPRAGLRDKELVGSPREAPEPHHMELGACARATEVGLQFLVDVVAHARAKSCVPSWCGQLLSLAQQSEDVAKVALRLLTGEDAVARAFPHEGDTRVAPLDGARESR---GWLAQMLVLCPHDSSKDAFIHLITTLVA 350
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2033.6115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LU89_ECTSI7.000e-9667.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTV6_9PHAE1.930e-8467.22USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2RJQ3_9STRA4.530e-830.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2033contigL-elsbetiae_contig2033:12068..14606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004090.1
Exons4
Model size636
Cds size633
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2033.6115.1prot_L-elsbetiae_contig2033.6115.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2033 12071..14606 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.633892-UTR-L-elsbetiae_contig2033:12067..120701622815839.633892-UTR-L-elsbetiae_contig2033:12067..12070Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2033 12068..12070 +
1691683137.81369-UTR-L-elsbetiae_contig2033:12067..120701691683137.81369-UTR-L-elsbetiae_contig2033:12067..12070Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2033 12068..12070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.6457958-CDS-L-elsbetiae_contig2033:12070..121051622815839.6457958-CDS-L-elsbetiae_contig2033:12070..12105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 12071..12105 +
1691683137.8255608-CDS-L-elsbetiae_contig2033:12070..121051691683137.8255608-CDS-L-elsbetiae_contig2033:12070..12105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 12071..12105 +
1622815839.6558495-CDS-L-elsbetiae_contig2033:12836..130291622815839.6558495-CDS-L-elsbetiae_contig2033:12836..13029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 12837..13029 +
1691683137.8362875-CDS-L-elsbetiae_contig2033:12836..130291691683137.8362875-CDS-L-elsbetiae_contig2033:12836..13029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 12837..13029 +
1622815839.6726773-CDS-L-elsbetiae_contig2033:13611..137581622815839.6726773-CDS-L-elsbetiae_contig2033:13611..13758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 13612..13758 +
1691683137.8449156-CDS-L-elsbetiae_contig2033:13611..137581691683137.8449156-CDS-L-elsbetiae_contig2033:13611..13758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 13612..13758 +
1622815839.6853027-CDS-L-elsbetiae_contig2033:14348..146061622815839.6853027-CDS-L-elsbetiae_contig2033:14348..14606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 14349..14606 +
1691683137.8557272-CDS-L-elsbetiae_contig2033:14348..146061691683137.8557272-CDS-L-elsbetiae_contig2033:14348..14606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 14349..14606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2033.6115.1

>prot_L-elsbetiae_contig2033.6115.1 ID=prot_L-elsbetiae_contig2033.6115.1|Name=mRNA_L-elsbetiae_contig2033.6115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
MDWSWSSEFGSKHDASRGEVYMSLDVLNEVWTAEMAFLRDMYLLDADFFR
FVWGLLQQREAAGPATATLAVHAGTKVAVELVAHARASTCVSPWCKRLSE
LAEAHPHAADNVLALLATGRRSGSQAGYLRELLVSCPRASTRLAFEHLAV
AAVAASSNPSKNGGGQGPTADWEGEPQEEVGRQTAALSRVLLDLLRDESR
GAARGDSPGGL
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mRNA from alignment at L-elsbetiae_contig2033:12068..14606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2033.6115.1 ID=mRNA_L-elsbetiae_contig2033.6115.1|Name=mRNA_L-elsbetiae_contig2033.6115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2539bp|location=Sequence derived from alignment at L-elsbetiae_contig2033:12068..14606+ (Laminarionema elsbetiae ELsaHSoW15)
TCTATGGACTGGAGCTGGAGCTCGGAGTTTGGCTCCAAGTGAGTGCTTGG
CTGCTGGTCGTGTGTTGGGTCAGTTTGCCTACAACCCGAGTCACAGCCGG
CGAGGAGCTTGAGAACGAGGATTGTGGGTTGGCTGGCCGATCTAGATACC
TACCGGTATTGGCGATGTTGCCCCCCCTGGGTTAACGGTTGTATGCATTC
AAGCCGTCACAGAACACATAGACATGTACTTGAAGTATCGTTTGGGGAGT
GGGAACTGGGGAAGTGGAATCGACTTCGGGTTCTGTCTATAAAGCAAGTG
TTGTCTATCCCTGTGGGCTTCCTGCCGGCTGCCCGTGTCTAGAAGCGTGT
AGCCTACCATCTTGCTTTGCCTCTCTCTTTCCTTCTTCGTTGTGTTTTTA
CCGTTATTTCAGCCGCGGGAGATCCAAGCAGCACCCGTTGGTCGCAAACT
TAAAACATAAGTAAATAAATAATGAAGATTCCTGGTACATCGCAAGAAGT
CCACGTCAGGGAAGAAAAACACGCCACCACAAAACCAAGAGTAATGAAGT
GCGCCCCCCCCCCCCCATGCATCTTTTGCTCGACAACGAAACACACTTAT
CTTGCAACAACGCGCAGCCGACTGTGTGTGTTTTGTCAAGGCCTCACCCA
CGCTTCGCTGTTTCAAGCCGCTATTATCTACCGTCGTGGCCTCACCCACC
CACCCACCCTTCCCTCTGTGCCTTTTCATCCCCTGTGCCCTTATCTACGA
CCCCGTCCCGGCCACCCAGACACGATGCCTCCCGGGGAGAAGTGTACATG
TCTCTGGACGTGCTGAACGAGGTGTGGACGGCGGAGATGGCGTTCCTGCG
AGACATGTACTTGCTCGACGCCGACTTTTTCCGCTTTGTGTGGGGCCTGC
TCCAGCAGCGGGAAGCGGCGGGGCCGGCCACCGCCACGCTCGCCGTGCAT
GCGGGCACTAAGGTATATTGTGTGTGTGTGTTTCGGGTCCCCGAATCGAG
CGCGCCACCCGCCGGGTTGGTTGCCTGGCCGTTTCTGGGTGTGTTTCTTC
TGATTTAATTTCCGTTCGCATGTCCTTCCTGCCTGCGTTCTGCAGAAACG
GAACTTTACGTCCGTTCATGCTGCGTGCGTCGTGGTTGCCAGAGATCAGT
GGTAGTCGATGAGGTGTCTTCGTGCTTTTGGAGATTGAATTGCATACAAC
GAGGATGTCACTAGATAGATAGCGTCACCGCGATGGCGTGATATGTAGCC
GAGCCTCGCATTGTCGCTAGATAGATAGCGTCACCGCGATGGCGTGGTTT
GTAGCCGAGCCTCGCGTTCCCACTCTTTGGCAGCGGTGGTGGGAGATGCG
TCAACACGCCCTTTCTGCTGGCACAAGCTCACTCACTGCTTTCGTTGCGA
CCCTCAGTAGAGCGAGCACTTAAACAGCAGAGACCAAGCCCCTTTGGTCT
ACTCACACCTTGAACACCTGATGGAATCATACCACCACCAGCGCCAACGC
CACCGCCAACGTGTGTGATATGCACCTTCCCGAAACCTGGTAAGGTTGCC
GTGGAATTGGTGGCGCACGCCAGAGCGTCGACGTGCGTTTCGCCGTGGTG
CAAGCGTCTCTCGGAGCTTGCGGAGGCTCACCCGCACGCAGCGGATAACG
TACTGGCCCTGTTGGCCACCGGCCGAAGAAGCGGTTCTCAGGTGATGCGT
CTACAACGTGGAGAGGGTCACGTAGAGTGTGTAGCTAAACGATGCATCGG
ATCTCGTGGTGGGTGGGTGTGATTTGCATCGGGGCGCGCGGGTGCAGCTG
GCCGTGCATCTAGTACCCCAGTGGCAAGCAGAGACCTTGCCCGCCCATTC
ACGCCCGAGGCTAGATTGAACGTCCTGCTGAATCTCCCTTCGCCTTCGGC
GTTCACTTCCACCACTCCATCCACGGACTGCAGTTGTAAACAGGGCAAAA
CAAAAGTTCAAGTGGATATGAGCTCTCTGTATGTATGACGGTTTCATAGT
GGTGTATATGCCGGTATGAAGACGTCGCGGTTGACGTAGAATGTGTATTT
TTTCAGCTTCGGCGGCGTGCTGGTGTGGGTGTTGACAGCCACTGCTGTTG
CGAACACGCCATCACGTGGAGACGACGTACCGCCGTTTTCAAGACTTCAC
CTCGAAACTCACTTGCGATCGACCAATCCAAGTGCGTAGGTTGTTCAACC
CTACCGTTTCGCCTTCTCCCCTCCCTCCCTTCGTCCCAATGTCTTTGCCC
CTCTACCCACCTACCACGTATCTGTCCACAGGCCGGCTACCTGCGAGAAC
TCTTGGTGTCTTGCCCGCGAGCATCGACCCGCCTGGCCTTCGAGCACCTC
GCCGTAGCCGCCGTGGCTGCTTCGTCCAACCCCTCCAAGAACGGCGGCGG
GCAAGGGCCGACGGCCGACTGGGAGGGCGAGCCGCAGGAGGAGGTCGGCC
GTCAAACCGCGGCCCTGTCTCGAGTTCTGCTGGACCTCCTGCGGGACGAG
TCGCGCGGGGCGGCGCGCGGGGATTCCCCGGGGGGGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2033:12068..14606+

>mRNA_L-elsbetiae_contig2033.6115.1 ID=mRNA_L-elsbetiae_contig2033.6115.1|Name=mRNA_L-elsbetiae_contig2033.6115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig2033:12068..14606+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACTGGAGCTGGAGCTCGGAGTTTGGCTCCAAATGGACTGGAGCTGG
AGCTCGGAGTTTGGCTCCAAACACGATGCCTCCCGGGGAGAAGTGTACAT
GTCTCTGGACGTGCTGAACGAGGTGTGGACGGCGGAGATGGCGTTCCTGC
GAGACATGTACTTGCTCGACGCCGACTTTTTCCGCTTTGTGTGGGGCCTG
CTCCAGCAGCGGGAAGCGGCGGGGCCGGCCACCGCCACGCTCGCCGTGCA
TGCGGGCACTAAGACACGATGCCTCCCGGGGAGAAGTGTACATGTCTCTG
GACGTGCTGAACGAGGTGTGGACGGCGGAGATGGCGTTCCTGCGAGACAT
GTACTTGCTCGACGCCGACTTTTTCCGCTTTGTGTGGGGCCTGCTCCAGC
AGCGGGAAGCGGCGGGGCCGGCCACCGCCACGCTCGCCGTGCATGCGGGC
ACTAAGGTTGCCGTGGAATTGGTGGCGCACGCCAGAGCGTCGACGTGCGT
TTCGCCGTGGTGCAAGCGTCTCTCGGAGCTTGCGGAGGCTCACCCGCACG
CAGCGGATAACGTACTGGCCCTGTTGGCCACCGGCCGAAGAAGCGGTTCT
CAGGTTGCCGTGGAATTGGTGGCGCACGCCAGAGCGTCGACGTGCGTTTC
GCCGTGGTGCAAGCGTCTCTCGGAGCTTGCGGAGGCTCACCCGCACGCAG
CGGATAACGTACTGGCCCTGTTGGCCACCGGCCGAAGAAGCGGTTCTCAG
GCCGGCTACCTGCGAGAACTCTTGGTGTCTTGCCCGCGAGCATCGACCCG
CCTGGCCTTCGAGCACCTCGCCGTAGCCGCCGTGGCTGCTTCGTCCAACC
CCTCCAAGAACGGCGGCGGGCAAGGGCCGACGGCCGACTGGGAGGGCGAG
CCGCAGGAGGAGGTCGGCCGTCAAACCGCGGCCCTGTCTCGAGTTCTGCT
GGACCTCCTGCGGGACGAGTCGCGCGGGGCGGCGCGCGGGGATTCCCCGG
GGGGGCTGGCCGGCTACCTGCGAGAACTCTTGGTGTCTTGCCCGCGAGCA
TCGACCCGCCTGGCCTTCGAGCACCTCGCCGTAGCCGCCGTGGCTGCTTC
GTCCAACCCCTCCAAGAACGGCGGCGGGCAAGGGCCGACGGCCGACTGGG
AGGGCGAGCCGCAGGAGGAGGTCGGCCGTCAAACCGCGGCCCTGTCTCGA
GTTCTGCTGGACCTCCTGCGGGACGAGTCGCGCGGGGCGGCGCGCGGGGA
TTCCCCGGGGGGGCTG
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