mRNA_L-elsbetiae_contig2033.6114.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI) HSP 1 Score: 519 bits (1336), Expect = 1.770e-170 Identity = 345/600 (57.50%), Postives = 383/600 (63.83%), Query Frame = 1 Query: 1 QVAKVKKLRRRDAAQLLVDKVPTRFTKTEL--GLSSNCTRDDILAALEAHPVLEAADGHPGTLLRLAPLLEDHKLNDGCVLQRAKRHRLEYQHESSHRLRASSRASSXXXXXXXXXXXXXXXXXXG--LQSGASDMGIG--FMGPTPATPTN---LRPAFSHDTHFLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHFLFAGGGMNGVPSNPSAFSGIGGSTHGSHAG--------SGHPHH-QRRHSAVPTSPTRHPS--HPQRRMSMQNHRLAMEELEEPDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSGGXXGEXXXXXWAMXXXXXXXXXXXXAGREVARYDCVPWDYLREGLKQHLCGQLTIPSNQDEVVDDGPYGWVNDG-----GEGGGYGAVNTPQVRGMNEDELAFVRGVLKTKQRKVRLKHERLLKER---GYDGGELEAAAGGTAVDGSVGXXXXXXXX------VISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTEHVS 1698 +VAKVK L+ RDAAQLL++KVPTRFTK EL LS CTR+DIL ALEAHPVL+AA+GHPGTLLRLAPLLEDH +ND CVL RA +HRLEY+ E+ H LR + RA S G L SGASDM +G G P TPT L A SHDTHF QQQXXXXXXXXX H L G GM G S S SGIGGS HG H+ S HPHH QRRHS+ P SPT HP HPQRRM++ N +A ELEEPDPP MTPEEKRAWDTAR A L+DRGCRLVWVKA+ NA GW YDGG G G W AG V YDCVPWDYLR GL QHLCG+LTIPS+ DEVVD+GPYGW D G G GYGAVNTPQVR MNE+ELAFVRGVLK KQ KVRLK E+L ++R GY G EL + A D + G XXXXXXX VISLDAFVEFSLWWAPLM TL+LLRNDWAS +P RVHGF+ R+AAER+L ++RGTFLLRFSES+PG LVVSFTEHV+ Sbjct: 308 RVAKVKPLKDRDAAQLLINKVPTRFTKKELRLSLSHRCTREDILKALEAHPVLKAAEGHPGTLLRLAPLLEDHNVNDACVLHRANQHRLEYKQET-HTLRRN-RAGSNTSLASSAGAAGTGMGGGGVALPSGASDMSLGNSMGGGRPMTPTQPHLLGHAMSHDTHFQQQQXXXXXXXXXVSPFFQDLSSWAGGGEM--------------------------HHPLLNGAGMAGGSSIHS--SGIGGSGHGIHSAAAPAAARASSHPHHHQRRHSSHPQSPT-HPRQHHPQRRMTVMNQLMAQVELEEPDPPQMTPEEKRAWDTARTAGLMDRGCRLVWVKATTNALLNGWTYDGGGGSDNG---GFGWPAEGAG--------AGG-VTNYDCVPWDYLRRGLMQHLCGKLTIPSSHDEVVDEGPYGWRGDASSVGVGVGNGYGAVNTPQVRWMNEEELAFVRGVLKAKQEKVRLKQEKLRQQRASRGYAGTELVSIGSSGAADAASGRXXXXXXXXXXXXDVISLDAFVEFSLWWAPLMPTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVT 864
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: A0A6H5KJ41_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ41_9PHAE) HSP 1 Score: 243 bits (621), Expect = 3.690e-72 Identity = 129/194 (66.49%), Postives = 145/194 (74.74%), Query Frame = 1 Query: 1153 QHLCGQLTIPSNQDEVVDDGPYGWVND--------GGEGGGYGAVNTPQVRGMNEDELAFVRGVLKTKQRKVRLKHERL---LKERGYDGGELEAAAGGTAVDGSVGXXXXXXXX-VISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTEHVS 1698 QHLCG LTIPSN +VVD+GPYGW D GGEG GYGAVNTPQVR MNE+ELAFVRGVLKTKQ KVRLK E+L L RGY G EL + A D + G VISL+AFVEFSLWWAPLM TL+LLRNDWAS +P RVHGF+ R+AAER+L ++RGTFLLRFSES+PG LVVSFTEHV+ Sbjct: 2 QHLCGNLTIPSNDTKVVDEGPYGWRGDASVGFGGRGGEGNGYGAVNTPQVRWMNEEELAFVRGVLKTKQEKVRLKQEKLRQQLASRGYSGTELVSIGSSGAADAAFGRDGGNGNGNVISLEAFVEFSLWWAPLMTTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVT 195
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: A0A6H5KH01_9PHAE (CHAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH01_9PHAE) HSP 1 Score: 232 bits (591), Expect = 1.500e-63 Identity = 164/356 (46.07%), Postives = 188/356 (52.81%), Query Frame = 1 Query: 1 QVAKVKKLRRRDAAQLLVDKVPTRFTKTEL--GLSSNCTRDDILAALEAHPVLEAADGHPGTLLRLAPLLEDHKLNDGCVLQRAKRHRLEYQHESSHRLRASSRASSXXXXXXXXXXXXXXXXXXGLQSGASDMGIG--FMGPTPATPTN---LRPAFSHDTHFLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHFLFAGGGMNGVPSNPSAFSGIGGSTHGSHAGSGHPHHQR----------RHSAVPTSPTR-HPSHPQRRMSMQNHRLAMEELEEPDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSG 1014 +VAKV+ L RDAAQLL+DKVPT+FTK EL LS CTR+DIL ALEAH VL+AA+GHPGTLLRLAPLLEDH +ND CVL+R + RLEY+ E R + +++ L SGASDM +G G P TPT L A SHDTHF QQ H L G GM G S S SGIGGS HG+H+ + R RHSA SPT H PQRRM++ N +A ELEEPDPP MTP EKRAWDTAR A L+DRGCRLVWV A+ NA GW YDGG G Sbjct: 435 RVAKVRPLNDRDAAQLLLDKVPTKFTKKELRLSLSHRCTREDILKALEAHRVLKAAEGHPGTLLRLAPLLEDHNVNDACVLERVTQCRLEYKLEPQTLRRNRASSNTSLASSVGAAGTGMGGGGVALPSGASDMSLGNSMGGGRPMTPTQPHFLGHAISHDTHFQQQHNGTGNGNGASPFFQEFSSWAGGGEM---------------------------HHPLLNGAGMAGGSSIHS--SGIGGSGHGTHSAAXXXXXXRPSXXXXXXXRRHSAHLQSPTHPHQHRPQRRMTVVNQLMAQVELEEPDPPQMTPREKRAWDTARTAGLMDRGCRLVWVTATTNALLNGWTYDGGGG 761
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI) HSP 1 Score: 157 bits (396), Expect = 8.530e-37 Identity = 190/621 (30.60%), Postives = 253/621 (40.74%), Query Frame = 1 Query: 4 VAKVKKLRRRDAAQLLVDKVPTRFTKTELGLSSN-CTRDDILAALEAHPVL----EAADGHPGTLLRLAPLLEDHKLNDGCVLQRAKRHRL-----------------------------------------EYQHESSHRLRASSRASSXXXXXXXXXXXXXXXXXXGLQSGASDMGIGFMGPTPATPTNLRPAFSHDTHFLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHFLFAGGGMNGVPSNPSAFSGIGGSTHGSHAGSGHPHHQRRHSAVPTS---------PTRHPSHPQRRMSMQNHR--LAMEELE-EPDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSGGXXGEXXXXXWAMXXXXXXXXXXXXAGREVARYDCVPWDYLREGLKQHLCGQLTIPSNQDEVVDDGPYGWVNDGGEGGGYGAVNTPQVRGMNEDELAFVRGVLKTKQRKVRLKHERLLKER-GYDGGELEAAAGGTAVDGSVGXXXXXXXXVISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTE 1689 VA+V+ L R A++LL+D +P TELGL S + D+L A++ HPVL E A+GHPGTL+RLAP+L D L+D C L+ R+ +++ +S R R S+ + S M + MGP + R DT FLQ+ XXXXXXXX V P+ R HS+ P + P + P H +Q+HR LA E + EP+ P M EE+R D AR A ++DRGCRLVWV A++ A GG R D XXXXXW+ R V W+ L+E L +HL N D+ + P+G V D TPQ L F+RG+L+ Q E + + R G G E GG D IS++AF +FS WWAPL+ TL ++RNDWA P+RVHGF+ RLAA+R L ++ GTFLLRFSESK G LV+SFT+ Sbjct: 335 VARVEPLETRHASELLMDNLPRNLELTELGLESGGLSLADVLTAVQNHPVLKEVLEIAEGHPGTLVRLAPVLLDGSLDDACRLKEMTTRRVVVAARVMVWRLFEWLLLLGATKVAYNWDLATIGSLSEECRADFRDKSYRRRRYGRPNSNRTAVSSKGELSVTMTLSSSTGAPRSPMILSPMGPAFGDTHDQRNR--GDTRFLQRDSSSXXXXXXXXRAGMTSPVRPVPNET--------------------------------------VREGPA----------------------RAHSSSPPARCRNPEWHGPPQPPPHSLLHQQLQDHRRVLAQEAPDDEPESPQMDMEEQRTRDLARAAGVVDRGCRLVWVTATSRMA-GGCRQDDXX------XXXXXWSSR-----------------RGKLVSWECLQESLMEHLREGTKTTRNWDDPIIS-PHGRVAD-----------TPQ--------LEFIRGILRRGQ-------EAVARARWGATGDECPEVDGGCRYD------------FISVEAFAKFSQWWAPLISTLGIIRNDWARTRPVRVHGFMSRLAAKRLLMQRECGTFLLRFSESKMGALVISFTQ 830
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: A0A6H5JPT3_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT3_9PHAE) HSP 1 Score: 150 bits (380), Expect = 4.430e-36 Identity = 101/276 (36.59%), Postives = 139/276 (50.36%), Query Frame = 1 Query: 862 EPDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSGGXXGEXXXXXWAMXXXXXXXXXXXXAGREVARYDCVPWDYLREGLKQHLCGQLTIPSNQDEVVDDGPYGWVNDGGEGGGYGAVNTPQVRGMNEDELAFVRGVLKTKQRKVRLKHERLLKERGYDGGELEAAAGGTAVDGSVGXXXXXXXXVISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTE 1689 EP+ M +E+RAWD AR A ++DRGCRL+WV A++ A G + DGG G G R + V W+ L+E L +HL N D+ + P+G V V+TPQ L F+RG+L+ Q E + K R G+ GG D +S++AF FS WWAPLM TL ++RNDWA+ P+RVHGF+ R+A++R L ++ GTFLLRFSES+ G LV+SFT+ Sbjct: 120 EPESSQMDLKEQRAWDLARAAGVVDRGCRLIWVTATSRMARGCRQDDGGGSG------------------------GGWSSRRGEIVSWECLQESLMEHLREGTKTTRNWDDPIIL-PHGRV-----------VDTPQ--------LEFIRGILRRGQ-------EAVAKARWGATGDECTEVGGDGRD-----------DFVSVEAFANFSQWWAPLMATLGIIRNDWATTRPVRVHGFMSRVASKRLLMQRECGTFLLRFSESRMGALVISFTQ 333
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI) HSP 1 Score: 149 bits (377), Expect = 2.400e-34 Identity = 189/624 (30.29%), Postives = 268/624 (42.95%), Query Frame = 1 Query: 1 QVAKVKKLRRRDAAQLLVDKVPTRFTKTELGLSSN-CTRDDILAALEAHPVL----EAADGHPGTLLRLAPLLEDHKLNDGCVLQ------RAKRHRLEYQHESSHRLRASSRASSXXXXXXXXXXXXXXXXXXGLQSGASDMGIGFMGPTPATPTNLRPA----FSHDTHFLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHFLFAGGGMNGVPSNPSAFSGIGGSTHGSHAGSGHPHHQ----RRHSAVPTSPTRHP--SHPQRRMSMQNHR--LAMEELEE-PDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSGGXXGEXXXXXWAMXXXXXXXXXXXXAGREVARYDCVPWDYLREGLKQHLCGQLTIP-----SNQDEVVDDGPYGWVNDGGE----------------------GGGYGAVNTPQV-------RGMNEDELAFVRGVLKTKQRKVRLKHERLLKERGYDGGELEAAAGGTAVDGSVGXXXXXXXXVISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTEHVS 1698 +VA+V+ L R A++LL+D P ELGL S ++ +++A + HPVL E A GHPGTL+RLAP+L + L+D C L+ RA Y+ R + + A S G + S G P PATP+ RPA FS D + + XXXXXXXXXXXXX G G G NP G P Q ++ + P RH + R++M + R +A E LEE P+ P M E++ AWD A AA ++RGCRL+WV A++N A WR D G XXXX R + V W++LREGL+++L ++T+P ++ + ++ Y +++DG E GG ++ R ++ + F+RG+L+ KQ+++ A AG VD IS++ F +FS WW PLM TL ++RNDWA P+ VHGF+GRL + L+ + RG FLLRFSES PG LV+S H S Sbjct: 453 RVAEVEPLETRHASELLIDNSPRDLQPEELGLQSGGLSKAHVVSAAQNHPVLKEVLEIAGGHPGTLVRLAPVLLNGPLDDACKLKEMATSCRADFRDKSYRRRGHRRSGSGTSAGSSSSLAMIAREMSEAGSSLGTSAPTSRSQCG--SPAPATPSQ-RPAMGNAFSEDAGHGRDRKRVSLNRTNSSIDGSXXXXXXXXXXXXXPPYPDEEDGGGGLPRAH-------------GSGPTGRCRNPRCH--------------GRPQQQPSLGQQSGSPPGCCLRHQFAQELRDRVAMMHRRQMMAREALEEQPELPQMNMEQQHAWDMAE-AAGVERGCRLLWVTATSNMA-NDWRRDNGX----------------------XXXXXXXASKRGEFVSWNHLREGLQRNLDVRMTVPCSSSGGDRHDALEGTQYTYLDDGQEVDSEEVXXXXXXXXXXXXXERAAGGERRTGNRRMGPLPHATRVLDRSQWGFIRGILRKKQKEL-------------------ANAGVQTVD-CTEYRLDGRYDFISVETFAKFSRWWVPLMGTLGIIRNDWARTRPVFVHGFIGRLETDENLR-RARGAFLLRFSESHPGKLVISRAYHHS 1001
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: A0A6H5KC67_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC67_9PHAE) HSP 1 Score: 124 bits (311), Expect = 4.910e-26 Identity = 188/610 (30.82%), Postives = 254/610 (41.64%), Query Frame = 1 Query: 4 VAKVKKLRRRDAAQLLVDKVPTRFTKTELGLSSN-CTRDDILAALEAHPVLEA----ADGHPGTLLRLAPLLEDHKLNDGCVLQR-AKRHRLEYQHESSHRLRASSRASSXXXXXXXXXXXXXXXXXXGLQSGASDMGIGFMGPTPATPTNLRPA----FSHDTHFLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHFLFAGGGMNGVPSNPSAFSGIGGSTHGSHAGSGHPHHQRRHSAVPTSPTRHPSHPQRRMSMQNHR--LAMEELEE-PDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSGGXXGEXXXXXWAMXXXXXXXXXXXXAGREVARYDCVPWDYLREGLKQHLCGQLTIPSNQD-----EVVDDGPYGWVNDG-------------------------GEGGGYGAVNTPQVRG----MNEDELAFVRGVLKTKQRKVRLKHERLLKERGYDGGELEAAAGGTAVDGSVGXXXXXXXXVISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTEH 1692 VA VK L+ + A++LL+D P ELGL S ++ D+++A+E HPVL+ A GHPGTL+RLAP+L LND L+ A + R ++ + S+R R R+ S L + A P PATP+ RPA FS D + + XXXXXXXXX XXXXXXXXX +G P SG GS HGS RH + + + Q ++ + R LA E LEE P+ P M E + AWD A AA ++RG RLVW A++ R G GG G G + + VP YL E L+ HL ++T+P + + ++ Y +++DG GEG G +R ++E +L F+R +L+ Q+ L A T S IS+ F FS WW PLM TL +RNDWA + PIRVHGF+GR A+ L+ + FLLRFSE PG LVVS H Sbjct: 433 VATVKPLKMQHASELLMDNSPRDLQPEELGLQSGGFSKADVVSAVENHPVLKEVLKIAGGHPGTLVRLAPVLLHGSLNDARKLKEVATKCRASFR-DKSYRQRGHRRSGSCTSAGSSNVARELSEAGSSLGTSAPTSRSPHGSPAPATPSQ-RPAMGNAFSEDAGHRRDRRCVSLNRTNSSIDGSGXXXXXXXXXWGTRPXXXXXXXXXEE---------------------DGGEGRPRPHSGNVGS-HGS---------LERHDWLQSCVHQLSLERQDEVNGMHRRQMLAREALEEQPELPQMNTEMQHAWDMAE-AARVERGSRLVWANATSYMVDDRRRNKGCGGGGWG---------------------VGGRLKLGEAVPLKYLLESLRWHLDVRMTVPCSSSSGGRHDPLEGTHYTYLDDGEEVDFEEVEADDXXXXXXXDQERAAGEGRRTGNRRMRPMRHATRVLDERQLGFIRSILRKNQK-------------------LAKAEANT--QDSTACELDGLEDPISVGTFSRFSQWWTPLMVTLGNIRNDWARIWPIRVHGFIGRHEAQALLRMKPTA-FLLRFSERHPGKLVVSRACH 965 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2033.6114.1 >prot_L-elsbetiae_contig2033.6114.1 ID=prot_L-elsbetiae_contig2033.6114.1|Name=mRNA_L-elsbetiae_contig2033.6114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=566bp QVAKVKKLRRRDAAQLLVDKVPTRFTKTELGLSSNCTRDDILAALEAHPVback to top mRNA from alignment at L-elsbetiae_contig2033:763..3540- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2033.6114.1 ID=mRNA_L-elsbetiae_contig2033.6114.1|Name=mRNA_L-elsbetiae_contig2033.6114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2778bp|location=Sequence derived from alignment at L-elsbetiae_contig2033:763..3540- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2033:763..3540- >mRNA_L-elsbetiae_contig2033.6114.1 ID=mRNA_L-elsbetiae_contig2033.6114.1|Name=mRNA_L-elsbetiae_contig2033.6114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3396bp|location=Sequence derived from alignment at L-elsbetiae_contig2033:763..3540- (Laminarionema elsbetiae ELsaHSoW15)back to top |