mRNA_L-elsbetiae_contig2033.6114.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2033.6114.1
Unique NamemRNA_L-elsbetiae_contig2033.6114.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI)

HSP 1 Score: 519 bits (1336), Expect = 1.770e-170
Identity = 345/600 (57.50%), Postives = 383/600 (63.83%), Query Frame = 1
Query:    1 QVAKVKKLRRRDAAQLLVDKVPTRFTKTEL--GLSSNCTRDDILAALEAHPVLEAADGHPGTLLRLAPLLEDHKLNDGCVLQRAKRHRLEYQHESSHRLRASSRASSXXXXXXXXXXXXXXXXXXG--LQSGASDMGIG--FMGPTPATPTN---LRPAFSHDTHFLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHFLFAGGGMNGVPSNPSAFSGIGGSTHGSHAG--------SGHPHH-QRRHSAVPTSPTRHPS--HPQRRMSMQNHRLAMEELEEPDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSGGXXGEXXXXXWAMXXXXXXXXXXXXAGREVARYDCVPWDYLREGLKQHLCGQLTIPSNQDEVVDDGPYGWVNDG-----GEGGGYGAVNTPQVRGMNEDELAFVRGVLKTKQRKVRLKHERLLKER---GYDGGELEAAAGGTAVDGSVGXXXXXXXX------VISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTEHVS 1698
            +VAKVK L+ RDAAQLL++KVPTRFTK EL   LS  CTR+DIL ALEAHPVL+AA+GHPGTLLRLAPLLEDH +ND CVL RA +HRLEY+ E+ H LR + RA S                  G  L SGASDM +G    G  P TPT    L  A SHDTHF QQQXXXXXXXXX                                            H L  G GM G  S  S  SGIGGS HG H+         S HPHH QRRHS+ P SPT HP   HPQRRM++ N  +A  ELEEPDPP MTPEEKRAWDTAR A L+DRGCRLVWVKA+ NA   GW YDGG G   G      W              AG  V  YDCVPWDYLR GL QHLCG+LTIPS+ DEVVD+GPYGW  D      G G GYGAVNTPQVR MNE+ELAFVRGVLK KQ KVRLK E+L ++R   GY G EL +     A D + G XXXXXXX      VISLDAFVEFSLWWAPLM TL+LLRNDWAS +P RVHGF+ R+AAER+L  ++RGTFLLRFSES+PG LVVSFTEHV+
Sbjct:  308 RVAKVKPLKDRDAAQLLINKVPTRFTKKELRLSLSHRCTREDILKALEAHPVLKAAEGHPGTLLRLAPLLEDHNVNDACVLHRANQHRLEYKQET-HTLRRN-RAGSNTSLASSAGAAGTGMGGGGVALPSGASDMSLGNSMGGGRPMTPTQPHLLGHAMSHDTHFQQQQXXXXXXXXXVSPFFQDLSSWAGGGEM--------------------------HHPLLNGAGMAGGSSIHS--SGIGGSGHGIHSAAAPAAARASSHPHHHQRRHSSHPQSPT-HPRQHHPQRRMTVMNQLMAQVELEEPDPPQMTPEEKRAWDTARTAGLMDRGCRLVWVKATTNALLNGWTYDGGGGSDNG---GFGWPAEGAG--------AGG-VTNYDCVPWDYLRRGLMQHLCGKLTIPSSHDEVVDEGPYGWRGDASSVGVGVGNGYGAVNTPQVRWMNEEELAFVRGVLKAKQEKVRLKQEKLRQQRASRGYAGTELVSIGSSGAADAASGRXXXXXXXXXXXXDVISLDAFVEFSLWWAPLMPTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVT 864          
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: A0A6H5KJ41_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ41_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 3.690e-72
Identity = 129/194 (66.49%), Postives = 145/194 (74.74%), Query Frame = 1
Query: 1153 QHLCGQLTIPSNQDEVVDDGPYGWVND--------GGEGGGYGAVNTPQVRGMNEDELAFVRGVLKTKQRKVRLKHERL---LKERGYDGGELEAAAGGTAVDGSVGXXXXXXXX-VISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTEHVS 1698
            QHLCG LTIPSN  +VVD+GPYGW  D        GGEG GYGAVNTPQVR MNE+ELAFVRGVLKTKQ KVRLK E+L   L  RGY G EL +     A D + G         VISL+AFVEFSLWWAPLM TL+LLRNDWAS +P RVHGF+ R+AAER+L  ++RGTFLLRFSES+PG LVVSFTEHV+
Sbjct:    2 QHLCGNLTIPSNDTKVVDEGPYGWRGDASVGFGGRGGEGNGYGAVNTPQVRWMNEEELAFVRGVLKTKQEKVRLKQEKLRQQLASRGYSGTELVSIGSSGAADAAFGRDGGNGNGNVISLEAFVEFSLWWAPLMTTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVT 195          
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: A0A6H5KH01_9PHAE (CHAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH01_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.500e-63
Identity = 164/356 (46.07%), Postives = 188/356 (52.81%), Query Frame = 1
Query:    1 QVAKVKKLRRRDAAQLLVDKVPTRFTKTEL--GLSSNCTRDDILAALEAHPVLEAADGHPGTLLRLAPLLEDHKLNDGCVLQRAKRHRLEYQHESSHRLRASSRASSXXXXXXXXXXXXXXXXXXGLQSGASDMGIG--FMGPTPATPTN---LRPAFSHDTHFLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHFLFAGGGMNGVPSNPSAFSGIGGSTHGSHAGSGHPHHQR----------RHSAVPTSPTR-HPSHPQRRMSMQNHRLAMEELEEPDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSG 1014
            +VAKV+ L  RDAAQLL+DKVPT+FTK EL   LS  CTR+DIL ALEAH VL+AA+GHPGTLLRLAPLLEDH +ND CVL+R  + RLEY+ E     R  + +++                   L SGASDM +G    G  P TPT    L  A SHDTHF QQ                                                      H L  G GM G  S  S  SGIGGS HG+H+ +      R          RHSA   SPT  H   PQRRM++ N  +A  ELEEPDPP MTP EKRAWDTAR A L+DRGCRLVWV A+ NA   GW YDGG G
Sbjct:  435 RVAKVRPLNDRDAAQLLLDKVPTKFTKKELRLSLSHRCTREDILKALEAHRVLKAAEGHPGTLLRLAPLLEDHNVNDACVLERVTQCRLEYKLEPQTLRRNRASSNTSLASSVGAAGTGMGGGGVALPSGASDMSLGNSMGGGRPMTPTQPHFLGHAISHDTHFQQQHNGTGNGNGASPFFQEFSSWAGGGEM---------------------------HHPLLNGAGMAGGSSIHS--SGIGGSGHGTHSAAXXXXXXRPSXXXXXXXRRHSAHLQSPTHPHQHRPQRRMTVVNQLMAQVELEEPDPPQMTPREKRAWDTARTAGLMDRGCRLVWVTATTNALLNGWTYDGGGG 761          
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 8.530e-37
Identity = 190/621 (30.60%), Postives = 253/621 (40.74%), Query Frame = 1
Query:    4 VAKVKKLRRRDAAQLLVDKVPTRFTKTELGLSSN-CTRDDILAALEAHPVL----EAADGHPGTLLRLAPLLEDHKLNDGCVLQRAKRHRL-----------------------------------------EYQHESSHRLRASSRASSXXXXXXXXXXXXXXXXXXGLQSGASDMGIGFMGPTPATPTNLRPAFSHDTHFLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHFLFAGGGMNGVPSNPSAFSGIGGSTHGSHAGSGHPHHQRRHSAVPTS---------PTRHPSHPQRRMSMQNHR--LAMEELE-EPDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSGGXXGEXXXXXWAMXXXXXXXXXXXXAGREVARYDCVPWDYLREGLKQHLCGQLTIPSNQDEVVDDGPYGWVNDGGEGGGYGAVNTPQVRGMNEDELAFVRGVLKTKQRKVRLKHERLLKER-GYDGGELEAAAGGTAVDGSVGXXXXXXXXVISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTE 1689
            VA+V+ L  R A++LL+D +P     TELGL S   +  D+L A++ HPVL    E A+GHPGTL+RLAP+L D  L+D C L+     R+                                         +++ +S  R R     S+                     +  S M +  MGP      + R     DT FLQ+    XXXXXXXX                                                     V   P+                      R HS+ P +         P + P H      +Q+HR  LA E  + EP+ P M  EE+R  D AR A ++DRGCRLVWV A++  A GG R D         XXXXXW+                   R   V W+ L+E L +HL        N D+ +   P+G V D           TPQ        L F+RG+L+  Q       E + + R G  G E     GG   D             IS++AF +FS WWAPL+ TL ++RNDWA   P+RVHGF+ RLAA+R L  ++ GTFLLRFSESK G LV+SFT+
Sbjct:  335 VARVEPLETRHASELLMDNLPRNLELTELGLESGGLSLADVLTAVQNHPVLKEVLEIAEGHPGTLVRLAPVLLDGSLDDACRLKEMTTRRVVVAARVMVWRLFEWLLLLGATKVAYNWDLATIGSLSEECRADFRDKSYRRRRYGRPNSNRTAVSSKGELSVTMTLSSSTGAPRSPMILSPMGPAFGDTHDQRNR--GDTRFLQRDSSSXXXXXXXXRAGMTSPVRPVPNET--------------------------------------VREGPA----------------------RAHSSSPPARCRNPEWHGPPQPPPHSLLHQQLQDHRRVLAQEAPDDEPESPQMDMEEQRTRDLARAAGVVDRGCRLVWVTATSRMA-GGCRQDDXX------XXXXXWSSR-----------------RGKLVSWECLQESLMEHLREGTKTTRNWDDPIIS-PHGRVAD-----------TPQ--------LEFIRGILRRGQ-------EAVARARWGATGDECPEVDGGCRYD------------FISVEAFAKFSQWWAPLISTLGIIRNDWARTRPVRVHGFMSRLAAKRLLMQRECGTFLLRFSESKMGALVISFTQ 830          
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: A0A6H5JPT3_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT3_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 4.430e-36
Identity = 101/276 (36.59%), Postives = 139/276 (50.36%), Query Frame = 1
Query:  862 EPDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSGGXXGEXXXXXWAMXXXXXXXXXXXXAGREVARYDCVPWDYLREGLKQHLCGQLTIPSNQDEVVDDGPYGWVNDGGEGGGYGAVNTPQVRGMNEDELAFVRGVLKTKQRKVRLKHERLLKERGYDGGELEAAAGGTAVDGSVGXXXXXXXXVISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTE 1689
            EP+   M  +E+RAWD AR A ++DRGCRL+WV A++  A G  + DGG  G                         G    R + V W+ L+E L +HL        N D+ +   P+G V           V+TPQ        L F+RG+L+  Q       E + K R    G+     GG   D             +S++AF  FS WWAPLM TL ++RNDWA+  P+RVHGF+ R+A++R L  ++ GTFLLRFSES+ G LV+SFT+
Sbjct:  120 EPESSQMDLKEQRAWDLARAAGVVDRGCRLIWVTATSRMARGCRQDDGGGSG------------------------GGWSSRRGEIVSWECLQESLMEHLREGTKTTRNWDDPIIL-PHGRV-----------VDTPQ--------LEFIRGILRRGQ-------EAVAKARWGATGDECTEVGGDGRD-----------DFVSVEAFANFSQWWAPLMATLGIIRNDWATTRPVRVHGFMSRVASKRLLMQRECGTFLLRFSESRMGALVISFTQ 333          
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 2.400e-34
Identity = 189/624 (30.29%), Postives = 268/624 (42.95%), Query Frame = 1
Query:    1 QVAKVKKLRRRDAAQLLVDKVPTRFTKTELGLSSN-CTRDDILAALEAHPVL----EAADGHPGTLLRLAPLLEDHKLNDGCVLQ------RAKRHRLEYQHESSHRLRASSRASSXXXXXXXXXXXXXXXXXXGLQSGASDMGIGFMGPTPATPTNLRPA----FSHDTHFLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHFLFAGGGMNGVPSNPSAFSGIGGSTHGSHAGSGHPHHQ----RRHSAVPTSPTRHP--SHPQRRMSMQNHR--LAMEELEE-PDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSGGXXGEXXXXXWAMXXXXXXXXXXXXAGREVARYDCVPWDYLREGLKQHLCGQLTIP-----SNQDEVVDDGPYGWVNDGGE----------------------GGGYGAVNTPQV-------RGMNEDELAFVRGVLKTKQRKVRLKHERLLKERGYDGGELEAAAGGTAVDGSVGXXXXXXXXVISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTEHVS 1698
            +VA+V+ L  R A++LL+D  P      ELGL S   ++  +++A + HPVL    E A GHPGTL+RLAP+L +  L+D C L+      RA      Y+     R  + + A S                  G  +  S    G   P PATP+  RPA    FS D    + +               XXXXXXXXXXXXX                              G G  G   NP                 G P  Q    ++  + P    RH      + R++M + R  +A E LEE P+ P M  E++ AWD A  AA ++RGCRL+WV A++N A   WR D G                       XXXX      R + V W++LREGL+++L  ++T+P      ++ + ++   Y +++DG E                       GG       ++       R ++  +  F+RG+L+ KQ+++                   A AG   VD             IS++ F +FS WW PLM TL ++RNDWA   P+ VHGF+GRL  +  L+ + RG FLLRFSES PG LV+S   H S
Sbjct:  453 RVAEVEPLETRHASELLIDNSPRDLQPEELGLQSGGLSKAHVVSAAQNHPVLKEVLEIAGGHPGTLVRLAPVLLNGPLDDACKLKEMATSCRADFRDKSYRRRGHRRSGSGTSAGSSSSLAMIAREMSEAGSSLGTSAPTSRSQCG--SPAPATPSQ-RPAMGNAFSEDAGHGRDRKRVSLNRTNSSIDGSXXXXXXXXXXXXXPPYPDEEDGGGGLPRAH-------------GSGPTGRCRNPRCH--------------GRPQQQPSLGQQSGSPPGCCLRHQFAQELRDRVAMMHRRQMMAREALEEQPELPQMNMEQQHAWDMAE-AAGVERGCRLLWVTATSNMA-NDWRRDNGX----------------------XXXXXXXASKRGEFVSWNHLREGLQRNLDVRMTVPCSSSGGDRHDALEGTQYTYLDDGQEVDSEEVXXXXXXXXXXXXXERAAGGERRTGNRRMGPLPHATRVLDRSQWGFIRGILRKKQKEL-------------------ANAGVQTVD-CTEYRLDGRYDFISVETFAKFSRWWVPLMGTLGIIRNDWARTRPVFVHGFIGRLETDENLR-RARGAFLLRFSESHPGKLVISRAYHHS 1001          
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Match: A0A6H5KC67_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC67_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.910e-26
Identity = 188/610 (30.82%), Postives = 254/610 (41.64%), Query Frame = 1
Query:    4 VAKVKKLRRRDAAQLLVDKVPTRFTKTELGLSSN-CTRDDILAALEAHPVLEA----ADGHPGTLLRLAPLLEDHKLNDGCVLQR-AKRHRLEYQHESSHRLRASSRASSXXXXXXXXXXXXXXXXXXGLQSGASDMGIGFMGPTPATPTNLRPA----FSHDTHFLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHFLFAGGGMNGVPSNPSAFSGIGGSTHGSHAGSGHPHHQRRHSAVPTSPTRHPSHPQRRMSMQNHR--LAMEELEE-PDPPAMTPEEKRAWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSGGXXGEXXXXXWAMXXXXXXXXXXXXAGREVARYDCVPWDYLREGLKQHLCGQLTIPSNQD-----EVVDDGPYGWVNDG-------------------------GEGGGYGAVNTPQVRG----MNEDELAFVRGVLKTKQRKVRLKHERLLKERGYDGGELEAAAGGTAVDGSVGXXXXXXXXVISLDAFVEFSLWWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFSESKPGILVVSFTEH 1692
            VA VK L+ + A++LL+D  P      ELGL S   ++ D+++A+E HPVL+     A GHPGTL+RLAP+L    LND   L+  A + R  ++ + S+R R   R+ S                   L + A         P PATP+  RPA    FS D    + +                XXXXXXXXX     XXXXXXXXX                       +G    P   SG  GS HGS           RH  + +   +     Q  ++  + R  LA E LEE P+ P M  E + AWD A  AA ++RG RLVW  A++       R  G  GG  G                      G  +   + VP  YL E L+ HL  ++T+P +       + ++   Y +++DG                         GEG   G      +R     ++E +L F+R +L+  Q+                   L  A   T    S           IS+  F  FS WW PLM TL  +RNDWA + PIRVHGF+GR  A+  L+ +    FLLRFSE  PG LVVS   H
Sbjct:  433 VATVKPLKMQHASELLMDNSPRDLQPEELGLQSGGFSKADVVSAVENHPVLKEVLKIAGGHPGTLVRLAPVLLHGSLNDARKLKEVATKCRASFR-DKSYRQRGHRRSGSCTSAGSSNVARELSEAGSSLGTSAPTSRSPHGSPAPATPSQ-RPAMGNAFSEDAGHRRDRRCVSLNRTNSSIDGSGXXXXXXXXXWGTRPXXXXXXXXXEE---------------------DGGEGRPRPHSGNVGS-HGS---------LERHDWLQSCVHQLSLERQDEVNGMHRRQMLAREALEEQPELPQMNTEMQHAWDMAE-AARVERGSRLVWANATSYMVDDRRRNKGCGGGGWG---------------------VGGRLKLGEAVPLKYLLESLRWHLDVRMTVPCSSSSGGRHDPLEGTHYTYLDDGEEVDFEEVEADDXXXXXXXDQERAAGEGRRTGNRRMRPMRHATRVLDERQLGFIRSILRKNQK-------------------LAKAEANT--QDSTACELDGLEDPISVGTFSRFSQWWTPLMVTLGNIRNDWARIWPIRVHGFIGRHEAQALLRMKPTA-FLLRFSERHPGKLVVSRACH 965          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2033.6114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FNX8_ECTSI1.770e-17057.50SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KJ41_9PHAE3.690e-7266.49SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KH01_9PHAE1.500e-6346.07CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
D7FNY4_ECTSI8.530e-3730.60SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPT3_9PHAE4.430e-3636.59SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FNY6_ECTSI2.400e-3430.29SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KC67_9PHAE4.910e-2630.82SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2033contigL-elsbetiae_contig2033:763..3540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score525.8
Seed ortholog evalue2.5e-146
Seed eggNOG ortholog2880.D7FNX8
Hectar predicted targeting categoryother localisation
EggNOG OGs28NM8@1,2QV6X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1698
Cds size1698
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2033.6114.1prot_L-elsbetiae_contig2033.6114.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2033 763..3540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815839.559149-CDS-L-elsbetiae_contig2033:762..12251622815839.559149-CDS-L-elsbetiae_contig2033:762..1225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 763..1225 -
1691683137.7504597-CDS-L-elsbetiae_contig2033:762..12251691683137.7504597-CDS-L-elsbetiae_contig2033:762..1225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 763..1225 -
1622815839.5702903-CDS-L-elsbetiae_contig2033:1423..24071622815839.5702903-CDS-L-elsbetiae_contig2033:1423..2407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 1424..2407 -
1691683137.7617137-CDS-L-elsbetiae_contig2033:1423..24071691683137.7617137-CDS-L-elsbetiae_contig2033:1423..2407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 1424..2407 -
1622815839.581211-CDS-L-elsbetiae_contig2033:2717..27851622815839.581211-CDS-L-elsbetiae_contig2033:2717..2785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 2718..2785 -
1691683137.7847178-CDS-L-elsbetiae_contig2033:2717..27851691683137.7847178-CDS-L-elsbetiae_contig2033:2717..2785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 2718..2785 -
1622815839.593235-CDS-L-elsbetiae_contig2033:3357..35401622815839.593235-CDS-L-elsbetiae_contig2033:3357..3540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 3358..3540 -
1691683137.8013587-CDS-L-elsbetiae_contig2033:3357..35401691683137.8013587-CDS-L-elsbetiae_contig2033:3357..3540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2033 3358..3540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2033.6114.1

>prot_L-elsbetiae_contig2033.6114.1 ID=prot_L-elsbetiae_contig2033.6114.1|Name=mRNA_L-elsbetiae_contig2033.6114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=566bp
QVAKVKKLRRRDAAQLLVDKVPTRFTKTELGLSSNCTRDDILAALEAHPV
LEAADGHPGTLLRLAPLLEDHKLNDGCVLQRAKRHRLEYQHESSHRLRAS
SRASSTNSLASDAAGGGNGGNGGGLQSGASDMGIGFMGPTPATPTNLRPA
FSHDTHFLQQQQQQQQQQQQQQQQRQRQQSNGHHQGNNSHAPATMPQAAA
GGGGGAGAGAGAGQHFLFAGGGMNGVPSNPSAFSGIGGSTHGSHAGSGHP
HHQRRHSAVPTSPTRHPSHPQRRMSMQNHRLAMEELEEPDPPAMTPEEKR
AWDTARNAALIDRGCRLVWVKASANAAAGGWRYDGGSGGGGGEGGGGGWA
MGGSGGWAMGGGGAGREVARYDCVPWDYLREGLKQHLCGQLTIPSNQDEV
VDDGPYGWVNDGGEGGGYGAVNTPQVRGMNEDELAFVRGVLKTKQRKVRL
KHERLLKERGYDGGELEAAAGGTAVDGSVGGGGGDDDDVISLDAFVEFSL
WWAPLMRTLTLLRNDWASMDPIRVHGFVGRLAAERELQHQQRGTFLLRFS
ESKPGILVVSFTEHVS
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mRNA from alignment at L-elsbetiae_contig2033:763..3540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2033.6114.1 ID=mRNA_L-elsbetiae_contig2033.6114.1|Name=mRNA_L-elsbetiae_contig2033.6114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2778bp|location=Sequence derived from alignment at L-elsbetiae_contig2033:763..3540- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGCAAAGGTGAAAAAGCTGAGGCGTCGGGACGCGGCGCAGCTCCT GGTGGACAAGGTCCCCACACGGTTCACCAAGACGGAGCTGGGCCTCTCGT CGAACTGCACGCGCGACGACATCTTGGCGGCGTTGGAAGCGCACCCGGTT TTGGAGGCGGCGGACGGACACCCGGGGACGCTGGTGAGGGCTCCCCAGAG TGTTGTTTTCGAAACATAAATCAAGAGGAGATCAAACATGGGAACCTCCT TCCTCCCCACATAAAAAACGGGACCCTTGTGGAAATATGGAAATATGGAA ATATTCCACAGAGCAGTGTTGTACAATACAGCTCCTCGGCCGAACCCCAG TAGATAGTACTGTACATTGTACAGTACTATCTACTGGGGTTCGGCCGAGG AGCGAAACACCTAAAACGTTTCAAGAGTTCGACACCTCCCCTGCACACTT TTGCTGGGTCAACCATCAAATGTTCCGGGGAGCAACGTTTTTTTGCTGCG GGAAGCGCAAATGTTTTGGGGGGGGGGTGGGGAACCGCTCATACATATGT AGAGGCATACCTACAATAGCACGTTGTGTTGTTGTCGTGCGACCGCGGAC GCCACAAACAATGCCGTGCATCTGGCCCCGAGGCGTTTCTCGACGACCAC GAGACGGAAATGTCCTTCGCATACAAATTTTGTGTGTTTGATGCTGTCTG TCTAATCGGCTCTCCCCCTTGTCTCGCGCCTATTGTTGTTGTTCTTGCTG TCCAGTTGCGGCTTGCTCCGCTCCTGGAGGACCACAAGTTGAACGACGGC TGCGTGTTGCAGAGGGCGAAGAGGTAAAGGGTTCGTTCTGTTTTTTCCGT GCCCTCTCGAGTGCGCTATGAACTGTCAACGGCGGTACGCACGGTGTAGC TAGTGGGGGCGGCGGGCGCGTGATCCGCTTGTGTCCATGGTGCGGATATG GCGGCACGGCGACCAGCCGCTGCCGTGGCACTATCGTAGAGAAGGGGGGT GTATCTCGTGCTCCATTGCTGTTGTTCCTTTACAGCGGCTTCTTTTCCAG TCGCCGCCCGCTGAATCATTCACCCCTCCCATTTTTGCCCTCGTATTGCC CCCCGTGCCTCATCTGTATCTCCGGCCGAGAAGGCATCGCCTTGAGTACC AACACGAATCGTCGCACAGGCTCAGAGCGAGCAGCCGCGCAAGCTCCACG AACTCTCTTGCCAGCGACGCCGCCGGGGGGGGGAACGGCGGCAACGGCGG GGGGCTGCAGAGCGGGGCCAGCGACATGGGCATCGGTTTCATGGGGCCGA CACCGGCGACGCCGACGAACCTGAGACCCGCCTTCAGCCACGACACCCAC TTTCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGAGGCAGCGGCAGCAGAGCAACGGCCACCACCAGGGCAATAACTCCC ACGCCCCCGCGACGATGCCGCAGGCGGCCGCCGGGGGGGGGGGCGGGGCC GGGGCCGGGGCAGGGGCCGGGCAGCACTTTCTGTTTGCCGGGGGCGGCAT GAACGGTGTCCCCAGCAACCCCAGCGCTTTTTCCGGGATAGGCGGGAGCA CCCACGGTAGCCACGCGGGCAGCGGCCACCCTCACCACCAGCGGCGGCAC TCGGCCGTCCCGACGTCCCCGACCCGCCACCCGTCGCACCCCCAGCGGCG GATGTCCATGCAGAACCACCGTTTAGCCATGGAGGAGCTCGAGGAGCCGG ACCCCCCGGCGATGACCCCGGAGGAGAAGCGGGCGTGGGACACGGCGCGC AACGCGGCGCTGATAGACAGAGGGTGCCGGCTCGTGTGGGTAAAGGCTTC CGCAAACGCCGCGGCCGGCGGGTGGAGATACGACGGCGGCAGCGGCGGCG GCGGGGGGGAGGGCGGGGGCGGTGGGTGGGCGATGGGCGGGAGCGGCGGG TGGGCGATGGGCGGCGGCGGGGCGGGCCGAGAGGTGGCGAGGTACGACTG CGTGCCGTGGGATTATCTCCGGGAGGGGCTCAAGCAGCACCTCTGCGGGC AGCTCACGATCCCCAGCAACCAGGACGAGGTCGTGGACGACGGCCCGTAC GGCTGGGTCAACGACGGGTTTGGCGGCGGCGGCGGCGGCGCGGGAGGAGG GATGGGGGAAGGGGGCGGGTACGGGGAGATCGGAAGAGCACACGTCTGAA CTCCAGTCACCCGACANNNNNNCCCCAGCAACCAGGACGGGGTCGGGGAC GCGGGCCGGTAGGGGGGGGTCAACGCGGGGTTGGGGGGCGGGGGGGGCGG GGGGGGGGGGGGGAGGGGGGAAGGGGGCGGGTACGGGGCGGTCAACACCC CGCAGGTTCGCGGCATGAACGAGGACGAACTCGCGTTCGTCCGGGGCGTG CTCAAGACCAAGCAGAGGAAGGTCCGCCTGAAGCACGAGAGGCTCCTCAA GGAGAGGGGCTACGACGGCGGCGAGCTGGAGGCGGCGGCCGGGGGCACGG CGGTCGACGGGTCCGTGGGCGGCGGCGGCGGCGACGACGACGACGTAATT TCCTTGGACGCGTTCGTGGAGTTCTCGCTGTGGTGGGCGCCGCTGATGCG GACGCTCACTCTCCTGAGGAATGACTGGGCGTCGATGGACCCGATCAGGG TGCACGGCTTCGTCGGGAGGCTGGCGGCGGAGCGGGAGCTGCAGCATCAA CAGCGCGGGACGTTCCTCCTGAGGTTCAGCGAATCCAAGCCGGGAATTCT TGTGGTCAGCTTTACGGAGCATGTGAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2033:763..3540-

>mRNA_L-elsbetiae_contig2033.6114.1 ID=mRNA_L-elsbetiae_contig2033.6114.1|Name=mRNA_L-elsbetiae_contig2033.6114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3396bp|location=Sequence derived from alignment at L-elsbetiae_contig2033:763..3540- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGCAAAGGTGAAAAAGCTGAGGCGTCGGGACGCGGCGCAGCTCCT
GGTGGACAAGGTCCCCACACGGTTCACCAAGACGGAGCTGGGCCTCTCGT
CGAACTGCACGCGCGACGACATCTTGGCGGCGTTGGAAGCGCACCCGGTT
TTGGAGGCGGCGGACGGACACCCGGGGACGCTGCAGGTGGCAAAGGTGAA
AAAGCTGAGGCGTCGGGACGCGGCGCAGCTCCTGGTGGACAAGGTCCCCA
CACGGTTCACCAAGACGGAGCTGGGCCTCTCGTCGAACTGCACGCGCGAC
GACATCTTGGCGGCGTTGGAAGCGCACCCGGTTTTGGAGGCGGCGGACGG
ACACCCGGGGACGCTGTTGCGGCTTGCTCCGCTCCTGGAGGACCACAAGT
TGAACGACGGCTGCGTGTTGCAGAGGGCGAAGAGTTGCGGCTTGCTCCGC
TCCTGGAGGACCACAAGTTGAACGACGGCTGCGTGTTGCAGAGGGCGAAG
AGGCATCGCCTTGAGTACCAACACGAATCGTCGCACAGGCTCAGAGCGAG
CAGCCGCGCAAGCTCCACGAACTCTCTTGCCAGCGACGCCGCCGGGGGGG
GGAACGGCGGCAACGGCGGGGGGCTGCAGAGCGGGGCCAGCGACATGGGC
ATCGGTTTCATGGGGCCGACACCGGCGACGCCGACGAACCTGAGACCCGC
CTTCAGCCACGACACCCACTTTCTGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGAGGCAGCGGCAGCAGAGCAACGGCCAC
CACCAGGGCAATAACTCCCACGCCCCCGCGACGATGCCGCAGGCGGCCGC
CGGGGGGGGGGGCGGGGCCGGGGCCGGGGCAGGGGCCGGGCAGCACTTTC
TGTTTGCCGGGGGCGGCATGAACGGTGTCCCCAGCAACCCCAGCGCTTTT
TCCGGGATAGGCGGGAGCACCCACGGTAGCCACGCGGGCAGCGGCCACCC
TCACCACCAGCGGCGGCACTCGGCCGTCCCGACGTCCCCGACCCGCCACC
CGTCGCACCCCCAGCGGCGGATGTCCATGCAGAACCACCGTTTAGCCATG
GAGGAGCTCGAGGAGCCGGACCCCCCGGCGATGACCCCGGAGGAGAAGCG
GGCGTGGGACACGGCGCGCAACGCGGCGCTGATAGACAGAGGGTGCCGGC
TCGTGTGGGTAAAGGCTTCCGCAAACGCCGCGGCCGGCGGGTGGAGATAC
GACGGCGGCAGCGGCGGCGGCGGGGGGGAGGGCGGGGGCGGTGGGTGGGC
GATGGGCGGGAGCGGCGGGTGGGCGATGGGCGGCGGCGGGGCGGGCCGAG
AGGTGGCGAGGTACGACTGCGTGCCGTGGGATTATCTCCGGGAGGGGCTC
AAGCAGCACCTCTGCGGGCAGCTCACGATCCCCAGCAACCAGGACGAGGT
CGTGGACGACGGCCCGTACGGCTGGGTCAACGACGGGCATCGCCTTGAGT
ACCAACACGAATCGTCGCACAGGCTCAGAGCGAGCAGCCGCGCAAGCTCC
ACGAACTCTCTTGCCAGCGACGCCGCCGGGGGGGGGAACGGCGGCAACGG
CGGGGGGCTGCAGAGCGGGGCCAGCGACATGGGCATCGGTTTCATGGGGC
CGACACCGGCGACGCCGACGAACCTGAGACCCGCCTTCAGCCACGACACC
CACTTTCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGAGGCAGCGGCAGCAGAGCAACGGCCACCACCAGGGCAATAACT
CCCACGCCCCCGCGACGATGCCGCAGGCGGCCGCCGGGGGGGGGGGCGGG
GCCGGGGCCGGGGCAGGGGCCGGGCAGCACTTTCTGTTTGCCGGGGGCGG
CATGAACGGTGTCCCCAGCAACCCCAGCGCTTTTTCCGGGATAGGCGGGA
GCACCCACGGTAGCCACGCGGGCAGCGGCCACCCTCACCACCAGCGGCGG
CACTCGGCCGTCCCGACGTCCCCGACCCGCCACCCGTCGCACCCCCAGCG
GCGGATGTCCATGCAGAACCACCGTTTAGCCATGGAGGAGCTCGAGGAGC
CGGACCCCCCGGCGATGACCCCGGAGGAGAAGCGGGCGTGGGACACGGCG
CGCAACGCGGCGCTGATAGACAGAGGGTGCCGGCTCGTGTGGGTAAAGGC
TTCCGCAAACGCCGCGGCCGGCGGGTGGAGATACGACGGCGGCAGCGGCG
GCGGCGGGGGGGAGGGCGGGGGCGGTGGGTGGGCGATGGGCGGGAGCGGC
GGGTGGGCGATGGGCGGCGGCGGGGCGGGCCGAGAGGTGGCGAGGTACGA
CTGCGTGCCGTGGGATTATCTCCGGGAGGGGCTCAAGCAGCACCTCTGCG
GGCAGCTCACGATCCCCAGCAACCAGGACGAGGTCGTGGACGACGGCCCG
TACGGCTGGGTCAACGACGGGGGGGAAGGGGGCGGGTACGGGGCGGTCAA
CACCCCGCAGGTTCGCGGCATGAACGAGGACGAACTCGCGTTCGTCCGGG
GCGTGCTCAAGACCAAGCAGAGGAAGGTCCGCCTGAAGCACGAGAGGCTC
CTCAAGGAGAGGGGCTACGACGGCGGCGAGCTGGAGGCGGCGGCCGGGGG
CACGGCGGTCGACGGGTCCGTGGGCGGCGGCGGCGGCGACGACGACGACG
TAATTTCCTTGGACGCGTTCGTGGAGTTCTCGCTGTGGTGGGCGCCGCTG
ATGCGGACGCTCACTCTCCTGAGGAATGACTGGGCGTCGATGGACCCGAT
CAGGGTGCACGGCTTCGTCGGGAGGCTGGCGGCGGAGCGGGAGCTGCAGC
ATCAACAGCGCGGGACGTTCCTCCTGAGGTTCAGCGAATCCAAGCCGGGA
ATTCTTGTGGTCAGCTTTACGGAGCATGTGAGTGGGGGAAGGGGGCGGGT
ACGGGGCGGTCAACACCCCGCAGGTTCGCGGCATGAACGAGGACGAACTC
GCGTTCGTCCGGGGCGTGCTCAAGACCAAGCAGAGGAAGGTCCGCCTGAA
GCACGAGAGGCTCCTCAAGGAGAGGGGCTACGACGGCGGCGAGCTGGAGG
CGGCGGCCGGGGGCACGGCGGTCGACGGGTCCGTGGGCGGCGGCGGCGGC
GACGACGACGACGTAATTTCCTTGGACGCGTTCGTGGAGTTCTCGCTGTG
GTGGGCGCCGCTGATGCGGACGCTCACTCTCCTGAGGAATGACTGGGCGT
CGATGGACCCGATCAGGGTGCACGGCTTCGTCGGGAGGCTGGCGGCGGAG
CGGGAGCTGCAGCATCAACAGCGCGGGACGTTCCTCCTGAGGTTCAGCGA
ATCCAAGCCGGGAATTCTTGTGGTCAGCTTTACGGAGCATGTGAGT
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