mRNA_L-elsbetiae_contig2030.6105.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2030.6105.1
Unique NamemRNA_L-elsbetiae_contig2030.6105.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2030.6105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2030contigL-elsbetiae_contig2030:9430..10743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size458
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2030.6105.1prot_L-elsbetiae_contig2030.6105.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2030 9519..10683 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815838.837634-UTR-L-elsbetiae_contig2030:9429..95181622815838.837634-UTR-L-elsbetiae_contig2030:9429..9518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2030 9430..9518 -
1691683137.2765105-UTR-L-elsbetiae_contig2030:9429..95181691683137.2765105-UTR-L-elsbetiae_contig2030:9429..9518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2030 9430..9518 -
1622815838.879717-UTR-L-elsbetiae_contig2030:10683..107431622815838.879717-UTR-L-elsbetiae_contig2030:10683..10743Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2030 10684..10743 -
1691683137.307565-UTR-L-elsbetiae_contig2030:10683..107431691683137.307565-UTR-L-elsbetiae_contig2030:10683..10743Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2030 10684..10743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815838.8549676-CDS-L-elsbetiae_contig2030:9518..98031622815838.8549676-CDS-L-elsbetiae_contig2030:9518..9803Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2030 9519..9803 -
1691683137.2901385-CDS-L-elsbetiae_contig2030:9518..98031691683137.2901385-CDS-L-elsbetiae_contig2030:9518..9803Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2030 9519..9803 -
1622815838.8671799-CDS-L-elsbetiae_contig2030:10659..106831622815838.8671799-CDS-L-elsbetiae_contig2030:10659..10683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2030 10660..10683 -
1691683137.2988293-CDS-L-elsbetiae_contig2030:10659..106831691683137.2988293-CDS-L-elsbetiae_contig2030:10659..10683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2030 10660..10683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2030.6105.1

>prot_L-elsbetiae_contig2030.6105.1 ID=prot_L-elsbetiae_contig2030.6105.1|Name=mRNA_L-elsbetiae_contig2030.6105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MPGARDQDMTRMSTQPTSKMLILRGTPIRTTAVHHLLSLKPRREKNLSEG
GPAIRRQRTHPKKRRSTTIPKYQEYRTRTVMRGGRGPPITRVIVGAPRFY
AA*
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mRNA from alignment at L-elsbetiae_contig2030:9430..10743-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2030.6105.1 ID=mRNA_L-elsbetiae_contig2030.6105.1|Name=mRNA_L-elsbetiae_contig2030.6105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig2030:9430..10743- (Laminarionema elsbetiae ELsaHSoW15)
GGGAGAGAGGGGTAGGCACCCTGTTCGAGTTCTAATCGCAGCTTCAGAGC
GGGACATACGATGCCTGGTGCTAGAGATCAGGATGTGAGTTGGACGGGGT
GGATCTCGGTCGCTCTTGAACTTGTCGAGTGTTCTCCCCGAAGAGAGTTG
CGAGCGTAACGAAAGATGGACGGAGATATCAGCACAATAAGTTGGTTGGC
GCTACAACTAGTTGTTTCCTTTTCTCTTGGGTGATACAGAAGGCCATCCG
TCCATCACAGATAGTTTACTTGCGATGCAGTATGTTGTCTTACCAGCTTA
CTGCCACTGCTGTTGAAGCCCCCAGCATCCCATGTCATGTCGTCAAATCG
ACGCACCAGCGGTGAACAGGAAGAGGGCAGCATCACATGCATGCAACCTC
TCTCTCCCTCCCTCTCGGTTTCTCTCTCCTTTTTCTTTCCTTGCACTGAG
AATGAAATTGATGTAACACCCACGGCACAGGGGCGATCCAAACTTCCGTG
CCACCTGTATGAGTAGACTACCGTAACCACACAAGATAACACTCCCCCCG
GTGATACATATTTTCGTTTAAAAATATTATCACCCAGGGTGATTTCTAGG
GGAGGGGGTGATATCTTCTGTGGCACGGGTGATAACCTCGCGGTCGGGAA
AGCCATCCAGGGGGTGTGATGACCAGGGGATGTGATAACCAGGGGGTGTG
ATATCACTGCCTGCTCGGACTGCTGCTGCGGCGTCTACAAGGGGTGTGAT
ACCCAGGGGGTGTGATAAGGGCAGGGTATAATTTCACTCACCGCGAAGAC
TGCTGCTGCAGCGATGGAAGGGGTGTGATAACCAGGGGGTGTGATAACGA
AAGATTGTGAAACGACGACTTGCGATGACTGTTGCCCTGTACGATCTATC
TCTACCGGTACCGCCGCCGCCGCCGCCGCCGCCGAGGCAGATGACGCGAA
TGTCTACTCAGCCTACTTCGAAAATGCTAATACTAAGGGGGACACCAATA
CGGACTACTGCTGTACACCATCTACTCTCGTTGAAACCAAGAAGGGAAAA
AAACCTCTCGGAAGGCGGACCAGCAATCAGGAGACAACGTACGCACCCAA
AAAAACGAAGATCCACGACGATACCGAAGTACCAGGAATACCGCACACGA
ACTGTGATGCGCGGCGGTCGTGGGCCACCGATCACCCGGGTGATAGTAGG
GGCTCCGCGGTTTTATGCGGCGTAACTTCAGTGGGGGTATTATCTTCCGT
GGCCGGGTGATAAATAGCAGTTTCAATCTGCGGCTAAAAATATTACCACC
GGGGGTGATTTCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2030:9430..10743-

>mRNA_L-elsbetiae_contig2030.6105.1 ID=mRNA_L-elsbetiae_contig2030.6105.1|Name=mRNA_L-elsbetiae_contig2030.6105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig2030:9430..10743- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGGTGCTAGAGATCAGGATATGCCTGGTGCTAGAGATCAGGATAT
GACGCGAATGTCTACTCAGCCTACTTCGAAAATGCTAATACTAAGGGGGA
CACCAATACGGACTACTGCTGTACACCATCTACTCTCGTTGAAACCAAGA
AGGGAAAAAAACCTCTCGGAAGGCGGACCAGCAATCAGGAGACAACGTAC
GCACCCAAAAAAACGAAGATCCACGACGATACCGAAGTACCAGGAATACC
GCACACGAACTGTGATGCGCGGCGGTCGTGGGCCACCGATCACCCGGGTG
ATAGTAGGGGCTCCGCGGTTTTATGCGGCGTAAATGACGCGAATGTCTAC
TCAGCCTACTTCGAAAATGCTAATACTAAGGGGGACACCAATACGGACTA
CTGCTGTACACCATCTACTCTCGTTGAAACCAAGAAGGGAAAAAAACCTC
TCGGAAGGCGGACCAGCAATCAGGAGACAACGTACGCACCCAAAAAAACG
AAGATCCACGACGATACCGAAGTACCAGGAATACCGCACACGAACTGTGA
TGCGCGGCGGTCGTGGGCCACCGATCACCCGGGTGATAGTAGGGGCTCCG
CGGTTTTATGCGGCGTAA
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