mRNA_L-elsbetiae_contig20274.6099.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20274.6099.1
Unique NamemRNA_L-elsbetiae_contig20274.6099.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20274.6099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20274contigL-elsbetiae_contig20274:1364..1905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size542
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20274.6099.1prot_L-elsbetiae_contig20274.6099.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20274 1480..1836 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815838.1244395-UTR-L-elsbetiae_contig20274:1363..14791622815838.1244395-UTR-L-elsbetiae_contig20274:1363..1479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20274 1364..1479 +
1691683136.6877856-UTR-L-elsbetiae_contig20274:1363..14791691683136.6877856-UTR-L-elsbetiae_contig20274:1363..1479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20274 1364..1479 +
1622815838.148416-UTR-L-elsbetiae_contig20274:1836..19051622815838.148416-UTR-L-elsbetiae_contig20274:1836..1905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20274 1837..1905 +
1691683136.710642-UTR-L-elsbetiae_contig20274:1836..19051691683136.710642-UTR-L-elsbetiae_contig20274:1836..1905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20274 1837..1905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815838.137635-CDS-L-elsbetiae_contig20274:1479..18361622815838.137635-CDS-L-elsbetiae_contig20274:1479..1836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20274 1480..1836 +
1691683136.6993697-CDS-L-elsbetiae_contig20274:1479..18361691683136.6993697-CDS-L-elsbetiae_contig20274:1479..1836Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20274 1480..1836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20274.6099.1

>prot_L-elsbetiae_contig20274.6099.1 ID=prot_L-elsbetiae_contig20274.6099.1|Name=mRNA_L-elsbetiae_contig20274.6099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MWHCVIMVCAEAHRVTVKYTCLLRFELALCWPKGKEEKRSDRVGVSTTGG
EPPSNHGKKHTHGLFQRPVGGKEDSPSSRTNILLVYFWNSLKLISVWISL
ELIWKHPDNGPYGPVHNP*
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mRNA from alignment at L-elsbetiae_contig20274:1364..1905+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20274.6099.1 ID=mRNA_L-elsbetiae_contig20274.6099.1|Name=mRNA_L-elsbetiae_contig20274.6099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=542bp|location=Sequence derived from alignment at L-elsbetiae_contig20274:1364..1905+ (Laminarionema elsbetiae ELsaHSoW15)
CGTAACGCAAAGCGTCTTGTAGTGGCGCGAAGTAGAGGTTCTGCAGTTAG
TTGTGCCAAGACCAATATGACATACATGTGTTGGGGATGTAACCTTGTGA
TAGGTGTATCACTTTGATGTGGCACTGTGTAATAATGGTGTGTGCAGAGG
CTCACAGAGTGACTGTAAAGTACACTTGTTTGTTGAGGTTTGAACTGGCG
CTTTGTTGGCCGAAAGGTAAGGAAGAGAAGAGAAGTGATCGAGTAGGGGT
GAGTACCACGGGGGGCGAGCCTCCAAGCAATCACGGAAAGAAGCACACAC
ACGGGCTATTTCAACGTCCCGTCGGGGGAAAGGAGGATAGTCCATCCTCC
AGAACTAATATCCTTCTGGTTTACTTCTGGAACTCTCTAAAACTAATATC
CGTCTGGATCTCTCTAGAACTAATATGGAAACATCCTGATAATGGCCCAT
ATGGTCCAGTGCATAACCCGTAGGTGCATACAACATGTGTGTGTGTGTGT
GTTTTCGTCCCATTTATTCGGGCGCCTGCCACACGTTTCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20274:1364..1905+

>mRNA_L-elsbetiae_contig20274.6099.1 ID=mRNA_L-elsbetiae_contig20274.6099.1|Name=mRNA_L-elsbetiae_contig20274.6099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig20274:1364..1905+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCACTGTGTAATAATGGTGTGTGCAGAGGCTCACAGAGTGACTGT
AAAGTACACTTGTTTGTTGAGGTTTGAACTGGCGCTTTGTTGGCCGAAAG
GTAAGGAAGAGAAGAGAAGTGATCGAGTAGGGGTGAGTACCACGGGGGGC
GAGCCTCCAAGCAATCACGGAAAGAAGCACACACACGGGCTATTTCAACG
TCCCGTCGGGGGAAAGGAGGATAGTCCATCCTCCAGAACTAATATCCTTC
TGGTTTACTTCTGGAACTCTCTAAAACTAATATCCGTCTGGATCTCTCTA
GAACTAATATGGAAACATCCTGATAATGGCCCATATGGTCCAGTGCATAA
CCCGTAGATGTGGCACTGTGTAATAATGGTGTGTGCAGAGGCTCACAGAG
TGACTGTAAAGTACACTTGTTTGTTGAGGTTTGAACTGGCGCTTTGTTGG
CCGAAAGGTAAGGAAGAGAAGAGAAGTGATCGAGTAGGGGTGAGTACCAC
GGGGGGCGAGCCTCCAAGCAATCACGGAAAGAAGCACACACACGGGCTAT
TTCAACGTCCCGTCGGGGGAAAGGAGGATAGTCCATCCTCCAGAACTAAT
ATCCTTCTGGTTTACTTCTGGAACTCTCTAAAACTAATATCCGTCTGGAT
CTCTCTAGAACTAATATGGAAACATCCTGATAATGGCCCATATGGTCCAG
TGCATAACCCGTAG
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