mRNA_L-elsbetiae_contig20273.6098.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20273.6098.1
Unique NamemRNA_L-elsbetiae_contig20273.6098.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20273.6098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20273contigL-elsbetiae_contig20273:814..1334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20273.6098.1prot_L-elsbetiae_contig20273.6098.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20273 908..1207 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815838.0604753-UTR-L-elsbetiae_contig20273:813..9071622815838.0604753-UTR-L-elsbetiae_contig20273:813..907Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20273 814..907 +
1691683136.6615345-UTR-L-elsbetiae_contig20273:813..9071691683136.6615345-UTR-L-elsbetiae_contig20273:813..907Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20273 814..907 +
1622815838.0827699-UTR-L-elsbetiae_contig20273:1207..13341622815838.0827699-UTR-L-elsbetiae_contig20273:1207..1334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20273 1208..1334 +
1691683136.6791346-UTR-L-elsbetiae_contig20273:1207..13341691683136.6791346-UTR-L-elsbetiae_contig20273:1207..1334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20273 1208..1334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815838.071567-CDS-L-elsbetiae_contig20273:907..12071622815838.071567-CDS-L-elsbetiae_contig20273:907..1207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20273 908..1207 +
1691683136.670609-CDS-L-elsbetiae_contig20273:907..12071691683136.670609-CDS-L-elsbetiae_contig20273:907..1207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20273 908..1207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20273.6098.1

>prot_L-elsbetiae_contig20273.6098.1 ID=prot_L-elsbetiae_contig20273.6098.1|Name=mRNA_L-elsbetiae_contig20273.6098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MKKIVSLFVVDGAESGGVEQRCCSLRIDECGPIEVGQRGSRACRSACSST
CSGGVVRGRHRRLMRGVYFLEKNCHVDFQVTHYAQRTGQSYQAKVTGYC*
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mRNA from alignment at L-elsbetiae_contig20273:814..1334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20273.6098.1 ID=mRNA_L-elsbetiae_contig20273.6098.1|Name=mRNA_L-elsbetiae_contig20273.6098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=521bp|location=Sequence derived from alignment at L-elsbetiae_contig20273:814..1334+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCAGGATCCCGGGCTGTGTCGATCTTGGAGATTCCCGAATTGTTGACG
TGGATATTTGCTGATTTGACGATGTAGTTCTCAGCAAGTGGTTGATGAAG
AAGATCGTCTCCTTGTTCGTCGTCGATGGCGCGGAGAGTGGCGGTGTAGA
GCAGCGGTGTTGTAGCCTCCGTATTGACGAGTGCGGCCCCATCGAGGTTG
GGCAGAGGGGCAGTAGGGCGTGCCGTAGTGCATGCAGTAGTACATGCAGT
GGTGGCGTCGTGCGTGGGCGGCACAGGAGGCTCATGCGCGGAGTCTACTT
TCTTGAGAAAAATTGTCATGTTGATTTTCAAGTGACGCACTACGCTCAGA
GGACGGGACAGAGCTACCAGGCGAAGGTAACGGGCTACTGCTAGCAGAGT
CGGTGCAATGCGGCTCTGGACTTGACATGCTTGCGCGCGTTGTCACGTGG
AAAGGCTGTGTCAACGCGGCCGAGATGGTGAAAAAACAATTGACTGGTGC
GGAAAAAATAACTCACGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20273:814..1334+

>mRNA_L-elsbetiae_contig20273.6098.1 ID=mRNA_L-elsbetiae_contig20273.6098.1|Name=mRNA_L-elsbetiae_contig20273.6098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig20273:814..1334+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAAGATCGTCTCCTTGTTCGTCGTCGATGGCGCGGAGAGTGGCGG
TGTAGAGCAGCGGTGTTGTAGCCTCCGTATTGACGAGTGCGGCCCCATCG
AGGTTGGGCAGAGGGGCAGTAGGGCGTGCCGTAGTGCATGCAGTAGTACA
TGCAGTGGTGGCGTCGTGCGTGGGCGGCACAGGAGGCTCATGCGCGGAGT
CTACTTTCTTGAGAAAAATTGTCATGTTGATTTTCAAGTGACGCACTACG
CTCAGAGGACGGGACAGAGCTACCAGGCGAAGGTAACGGGCTACTGCTAG
ATGAAGAAGATCGTCTCCTTGTTCGTCGTCGATGGCGCGGAGAGTGGCGG
TGTAGAGCAGCGGTGTTGTAGCCTCCGTATTGACGAGTGCGGCCCCATCG
AGGTTGGGCAGAGGGGCAGTAGGGCGTGCCGTAGTGCATGCAGTAGTACA
TGCAGTGGTGGCGTCGTGCGTGGGCGGCACAGGAGGCTCATGCGCGGAGT
CTACTTTCTTGAGAAAAATTGTCATGTTGATTTTCAAGTGACGCACTACG
CTCAGAGGACGGGACAGAGCTACCAGGCGAAGGTAACGGGCTACTGCTAG
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