mRNA_L-elsbetiae_contig20243.6092.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20243.6092.1
Unique NamemRNA_L-elsbetiae_contig20243.6092.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20243.6092.1 vs. uniprot
Match: D7FZN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN4_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.170e-10
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 1 
Query:  259 SGRSRKPVDRFVDNFVVVDKKKPPKIAKGKGTAFKDFSTWRRSCGALAPVGSCVGCTGSLLGARSRYRNAYLGQVLNFSGIPNEKPLHKVTLGLEGQTRTSCVKWKLGKLAELLDFLEV 615
            SGR RK +DR  DN+     KK  +IAKG G+A +D        G L      +G   +LL      +     Q+L FSGIP+++ L KVT  L+ +      KW +  + E +D LEV
Sbjct:  240 SGRKRKSIDRLGDNYAAAQDKKSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGIPDDEALDKVTSRLDSK------KWPVPMVKEAMDLLEV 352
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20243.6092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZN4_ECTSI1.170e-1035.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20243contigL-elsbetiae_contig20243:2..2535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D7FZN4
KEGG koko:K17046
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of double-strand break repair via nonhomologous end joining
EggNOG OGsKOG2266@1,KOG2266@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size780
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20243.6092.1prot_L-elsbetiae_contig20243.6092.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20243 41..2304 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815837.2242973-UTR-L-elsbetiae_contig20243:1..401622815837.2242973-UTR-L-elsbetiae_contig20243:1..40Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20243 2..40 -
1691683136.0686526-UTR-L-elsbetiae_contig20243:1..401691683136.0686526-UTR-L-elsbetiae_contig20243:1..40Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20243 2..40 -
1622815837.291002-UTR-L-elsbetiae_contig20243:2304..25351622815837.291002-UTR-L-elsbetiae_contig20243:2304..2535Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20243 2305..2535 -
1691683136.110071-UTR-L-elsbetiae_contig20243:2304..25351691683136.110071-UTR-L-elsbetiae_contig20243:2304..2535Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20243 2305..2535 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815837.239035-CDS-L-elsbetiae_contig20243:40..2561622815837.239035-CDS-L-elsbetiae_contig20243:40..256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20243 41..256 -
1691683136.078291-CDS-L-elsbetiae_contig20243:40..2561691683136.078291-CDS-L-elsbetiae_contig20243:40..256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20243 41..256 -
1622815837.2541285-CDS-L-elsbetiae_contig20243:916..9821622815837.2541285-CDS-L-elsbetiae_contig20243:916..982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20243 917..982 -
1691683136.0858386-CDS-L-elsbetiae_contig20243:916..9821691683136.0858386-CDS-L-elsbetiae_contig20243:916..982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20243 917..982 -
1622815837.265625-CDS-L-elsbetiae_contig20243:1570..17231622815837.265625-CDS-L-elsbetiae_contig20243:1570..1723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20243 1571..1723 -
1691683136.0937436-CDS-L-elsbetiae_contig20243:1570..17231691683136.0937436-CDS-L-elsbetiae_contig20243:1570..1723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20243 1571..1723 -
1622815837.278242-CDS-L-elsbetiae_contig20243:2229..23041622815837.278242-CDS-L-elsbetiae_contig20243:2229..2304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20243 2230..2304 -
1691683136.1018012-CDS-L-elsbetiae_contig20243:2229..23041691683136.1018012-CDS-L-elsbetiae_contig20243:2229..2304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20243 2230..2304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20243.6092.1

>prot_L-elsbetiae_contig20243.6092.1 ID=prot_L-elsbetiae_contig20243.6092.1|Name=mRNA_L-elsbetiae_contig20243.6092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MDGPGKRKPSGRSRKPVDRFVDNFVVVDKKKPPKIAKGKGTAFKDFSTWR
RSCGALAPVGSCVGCTGSLLGARSRYRNAYLGQVLNFSGIPNEKPLHKVT
LGLEGQTRTSCVKWKLGKLAELLDFLEVGFGMLSRSVQSTPSWMNVVEVS
RGKARCASGCKNSTGMKTR*
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mRNA from alignment at L-elsbetiae_contig20243:2..2535-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20243.6092.1 ID=mRNA_L-elsbetiae_contig20243.6092.1|Name=mRNA_L-elsbetiae_contig20243.6092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2534bp|location=Sequence derived from alignment at L-elsbetiae_contig20243:2..2535- (Laminarionema elsbetiae ELsaHSoW15)
CTCCACTTTCCGACCTGTCTCTCCAGACCTAGGTCTCACTAATACAATAC
CTTTCTACAAAAGCCACTGATTTACCAACACCGGAAGCAATGCTGGTGGA
TCAAGCTTTCATATTTTGTAAGCCGCGTCGGACAGACGTAGCCCATCCGC
CCGTCTCCCACCCTTGTCTTTTTTTCCGTCACGATGCACGCGCGGCCTGG
GGCTACAGCCTTCAAGTGAGCCCTATGTACCATGGATGGCCCCGGCAAAC
GTAAACCTAGCGGGCGCAGCAGGAAACCTGTGGATAGATTCGTCGACAAC
TTCGTGGTAAGAGAGATGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGCT
GCTGCTGCTGTTACTAAGCTGGTACGGTTGACCTTGTGTTGGACATGCTA
TTTCTCGCTAACTGTGTCAGCAAGGTCTGCCAGGAAATCAACCATGTGGA
CGGATTAACAACACGGTGATCAATGTGCAGACACATACTTCGTATGTACC
TTACTAACAATATCGTCGGCGACAAAGGCGACGCGCCCGCCAGTGGCCTG
TTGAGTTTGATGCGCGAAGCCCCATCCTGCCCGTCCGCCCTCGGCATTCA
TTTCAGGCCAAGCGCGCGACACCAGCTCAGCCCCGACGGTCAATGCCAAG
ATTGATGATTTCCAAGAGGACCGCTGGTGTTACCTCCGCCGAATAACGAG
AAGCACGCAGTGCTTTTAAACCGTGATTCCGACCACCTGTTCCACCCACG
TTGGCGTTGAAAGCGCGCCCTCCGTCCCCCACCTGCGTATTTTTCCTGCG
GACAACGCAAAGGTCGTGGACAAAAAGAAGCCGCCGAAGATCGCCAAGGG
CAAGGGGACCGCTTTCAAGGACTTTTCTACTTGGCGAAGAAGCTGCGGGG
CATTGGCACCTGTGGGTTCTTGTGTAGGCTGCACAGGGTCCTTATTGGGG
GCACGGTCTCGATACGCTTCGTGGATGCAATTATGATGGAGGTTTTGGGG
GGAGGAAAGGCACAGGCATGACTGCATGAGAGATGAGGCAAATGAAACAA
GTGCAGCACTACATACTGTATGGGTTTATGTATTATACAGAACATGACTT
GCTTGCTTGGAGTCCATGTTGCCGCTGTGCATGCCTTGACAAGTGCATAG
TTTGTATGTAGGGTTGCTCGTAATTGGTGCATGGTAAGCAACATCAAGGC
AAGACGGGGTAGAACAAAACTAGACCGAAAAATGCGAATACTGGCAGAGC
TGCCTTCTGTTGGTATGACGAATCCTAGAACATGGCGTAGAAGCCGGTTT
TGGCAACTGCCGCAGTGATACGTCATCTTCAGGTGCGCAGCTCGCTCTCT
GGGCAACTGTGCTGATAGAGATGTGCAGACCACCAGCGCACGATGAATAT
AAATCCGACCTCAATGCACTGGACTGTGTCTTGGACATCCGACTTTCTGT
GTCAATACCGGACAGGCGACCGATCTTGGTTTCTTGCTGAACCTACATTT
TTCTCCCGCCTCACATCCTGTTGCGTTGTGTGTTCTGGGGCGTGCGCTGA
CAGCGAAATGCATACTTGGGGCAGGTGCTCAACTTTTCGGGCATCCCAAA
TGAAAAACCCCTGCACAAGGTGGGCGCGCGGGGTTTGCCAACGCGGCGGT
TTGTACTGCTCCGGTTTGCCTGGTGGTTGTTTTTGCATCCAAAGAAGTGC
CGGAGTGATTGGTTGGTCAATATTCAATTCAGCTGGCATGGCCCAATCAG
CTATGGCTACGGCCACACGGACGTAAAACTGCTGTGGCAAACTACAATTT
GAACGCTTTTAGTTTGCTAATTTGTTCGTTACCCGGACCGTCCTGGTTGT
TGTCACTGATTCCGATTCCTCCGGGTGTGTTTACTGTCTGTCGTCTGTCT
GGAAATCCTCCCTTTTTTGATGATATCTTTGGACCGGATAGTGTACCTGT
CTGTGGTTGTACAGTGTACACCTGATTTGGTCCGTGGATGGACCACTTCC
GGGGTATGGTGCTCAGCTTTCTTAGTTGGCATTTTTTCACTGGGCCTCCG
GAAATATGCCGGCATGTTTAGAACACCACCGTCGACACCAAGGAGTATTA
CGGACGGCATAAGAAGTGCCATGATGCTGCTGCTGTTGCCCTGCCGATGC
TGCTCCAACATAACTTATTCCTGTCACTTGCTTATGCCGGGCATTGCTAC
TAAATACATATCTGTTGCTGACGCCACGGCCGTACGTACCGGTGCTCTTT
TGCGCTCGTGGCATTTGACCATGAACCAGGTGACTTTAGGCCTGGAAGGC
CAAACTCGAACGTCCTGCGTCAAGTGGAAGCTCGGGAAACTGGCGGAATT
ATTGGACTTCCTGGAAGTAGGTTTTGGGATGTTGAGTAGATCCGTGCAGA
GTACGCCCAGTTGGATGAACGTCGTAGAAGTAAGTCGCGGAAAAGCTCGA
TGTGCGAGCGGGTGTAAAAACTCCACGGGTATGAAGACCCGTTGATGGCG
AATTGCTGTAGAGTGTGGAAACTCAGGGTGTAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20243:2..2535-

>mRNA_L-elsbetiae_contig20243.6092.1 ID=mRNA_L-elsbetiae_contig20243.6092.1|Name=mRNA_L-elsbetiae_contig20243.6092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig20243:2..2535- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGGCCCCGGCAAACGTAAACCTAGCGGGCGCAGCAGGAAACCTGT
GGATAGATTCGTCGACAACTTCGTGATGGATGGCCCCGGCAAACGTAAAC
CTAGCGGGCGCAGCAGGAAACCTGTGGATAGATTCGTCGACAACTTCGTG
GTCGTGGACAAAAAGAAGCCGCCGAAGATCGCCAAGGGCAAGGGGACCGC
TTTCAAGGACTTTTCTACTTGGCGAAGAAGCTGCGGGGCATTGGCACCTG
TGGGTTCTTGTGTAGGCTGCACAGGGTCCTTATTGGGGGCACGGTCTCGA
TACGTCGTGGACAAAAAGAAGCCGCCGAAGATCGCCAAGGGCAAGGGGAC
CGCTTTCAAGGACTTTTCTACTTGGCGAAGAAGCTGCGGGGCATTGGCAC
CTGTGGGTTCTTGTGTAGGCTGCACAGGGTCCTTATTGGGGGCACGGTCT
CGATACCGAAATGCATACTTGGGGCAGGTGCTCAACTTTTCGGGCATCCC
AAATGAAAAACCCCTGCACAAGCGAAATGCATACTTGGGGCAGGTGCTCA
ACTTTTCGGGCATCCCAAATGAAAAACCCCTGCACAAGGTGACTTTAGGC
CTGGAAGGCCAAACTCGAACGTCCTGCGTCAAGTGGAAGCTCGGGAAACT
GGCGGAATTATTGGACTTCCTGGAAGTAGGTTTTGGGATGTTGAGTAGAT
CCGTGCAGAGTACGCCCAGTTGGATGAACGTCGTAGAAGTAAGTCGCGGA
AAAGCTCGATGTGCGAGCGGGTGTAAAAACTCCACGGGTATGAAGACCCG
TTGAGTGACTTTAGGCCTGGAAGGCCAAACTCGAACGTCCTGCGTCAAGT
GGAAGCTCGGGAAACTGGCGGAATTATTGGACTTCCTGGAAGTAGGTTTT
GGGATGTTGAGTAGATCCGTGCAGAGTACGCCCAGTTGGATGAACGTCGT
AGAAGTAAGTCGCGGAAAAGCTCGATGTGCGAGCGGGTGTAAAAACTCCA
CGGGTATGAAGACCCGTTGA
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