mRNA_L-elsbetiae_contig2022.6085.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2022.6085.1
Unique NamemRNA_L-elsbetiae_contig2022.6085.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2022.6085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2022contigL-elsbetiae_contig2022:18715..19776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size669
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2022.6085.1prot_L-elsbetiae_contig2022.6085.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2022 18725..19201 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.3370292-UTR-L-elsbetiae_contig2022:18714..187241622815836.3370292-UTR-L-elsbetiae_contig2022:18714..18724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2022 18715..18724 -
1691683135.4582376-UTR-L-elsbetiae_contig2022:18714..187241691683135.4582376-UTR-L-elsbetiae_contig2022:18714..18724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2022 18715..18724 -
1622815836.3603988-UTR-L-elsbetiae_contig2022:19201..192101622815836.3603988-UTR-L-elsbetiae_contig2022:19201..19210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2022 19202..19210 -
1691683135.4759045-UTR-L-elsbetiae_contig2022:19201..192101691683135.4759045-UTR-L-elsbetiae_contig2022:19201..19210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2022 19202..19210 -
1622815836.3707542-UTR-L-elsbetiae_contig2022:19603..197761622815836.3707542-UTR-L-elsbetiae_contig2022:19603..19776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2022 19604..19776 -
1691683135.4844985-UTR-L-elsbetiae_contig2022:19603..197761691683135.4844985-UTR-L-elsbetiae_contig2022:19603..19776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2022 19604..19776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815836.349513-CDS-L-elsbetiae_contig2022:18724..192011622815836.349513-CDS-L-elsbetiae_contig2022:18724..19201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2022 18725..19201 -
1691683135.4673758-CDS-L-elsbetiae_contig2022:18724..192011691683135.4673758-CDS-L-elsbetiae_contig2022:18724..19201Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2022 18725..19201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2022.6085.1

>prot_L-elsbetiae_contig2022.6085.1 ID=prot_L-elsbetiae_contig2022.6085.1|Name=mRNA_L-elsbetiae_contig2022.6085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MLAHYFNLLKPEINNHNQAVCQTADYLLFSKESVRKAVGSWTSYGEIRVA
RRSGPTGGGLTADVKTHLASCVEQLNQEGDVSFGKLRAMLRSPLSASGGA
GGDGDPAGGTASGNEPGKGGRPISVCCSTIRSWLKTMGYSRVKGEKGFTF
AAPEATTL*
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mRNA from alignment at L-elsbetiae_contig2022:18715..19776-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2022.6085.1 ID=mRNA_L-elsbetiae_contig2022.6085.1|Name=mRNA_L-elsbetiae_contig2022.6085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig2022:18715..19776- (Laminarionema elsbetiae ELsaHSoW15)
GAGGGAAAACCATGCCAAGTCTTTCGAAAGCCGCGCAAAAGAGGAAAACA
AGAAGCCAGGCAGCAGCCCAGACCCGCTGGGATGCGAAGAGTGGCCGCGA
GAAGGGGCAGACCATCAAGGAGAACCTCGAGAAGCTCAAGCGGAGAAAGG
GGCAGTTCATCACCAGGGAGTAGGTGAATGAGCCACTCGCTGCCCTGTCA
TGCTGCTGTTCCGAAAGAGAGCCGCACACATGTGCACCACACCCAGCGGT
CGCGCAGCGCACCGTCTTCTTTGTTTCGAAAGGTAGGCACGCTGAAACAA
AAACTGCAGCAGTCGTACAGTAGTGTCGAGGGGGGCAAGAAAAGCCTGCG
CCCGTCAATTGTACTGCTGTACAGCAGCAGCAGCACACGGTCTGAAACCC
CTCCCGTTACCTCCCCTCCCTCACCGCGACCGCCACGGCATTTGCGGCAG
TGGGCAAAAACAAAATCGTATAGATTGCCACTGCTGCAAGCTCACCAGTA
ACCCCCCCCCACACACACATGTTGCTGTTCCTTCCTTTTGCGTCACCCCG
CCTTGACTCCTTTCAGACGAGGTGTATGCTTGCGCACTACTTCAATCTCC
TCAAGCCAGAGATTAATAACCACAACCAGGCGGTATGCCAGACTGCCGAT
TACCTGCTGTTTTCGAAGGAGTCGGTCAGAAAGGCCGTGGGGAGCTGGAC
ATCATACGGCGAGATCCGTGTCGCGCGCAGGAGTGGCCCTACCGGGGGGG
GGCTCACCGCCGACGTCAAGACGCACCTAGCGAGTTGTGTGGAGCAGCTG
AACCAGGAGGGAGATGTCAGCTTTGGCAAGCTTCGGGCGATGCTGAGGAG
CCCTCTCAGCGCGAGCGGGGGTGCGGGTGGGGATGGAGACCCGGCGGGTG
GCACTGCAAGTGGAAACGAACCCGGCAAGGGCGGCAGGCCAATTTCGGTG
TGTTGTAGCACGATACGGAGCTGGCTGAAGACCATGGGCTACTCTCGCGT
CAAGGGGGAAAAGGGTTTTACATTCGCCGCCCCAGAGGCCACGACGTTAT
AAAATAGAAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2022:18715..19776-

>mRNA_L-elsbetiae_contig2022.6085.1 ID=mRNA_L-elsbetiae_contig2022.6085.1|Name=mRNA_L-elsbetiae_contig2022.6085.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig2022:18715..19776- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTGCGCACTACTTCAATCTCCTCAAGCCAGAGATTAATAACCACAA
CCAGGCGGTATGCCAGACTGCCGATTACCTGCTGTTTTCGAAGGAGTCGG
TCAGAAAGGCCGTGGGGAGCTGGACATCATACGGCGAGATCCGTGTCGCG
CGCAGGAGTGGCCCTACCGGGGGGGGGCTCACCGCCGACGTCAAGACGCA
CCTAGCGAGTTGTGTGGAGCAGCTGAACCAGGAGGGAGATGTCAGCTTTG
GCAAGCTTCGGGCGATGCTGAGGAGCCCTCTCAGCGCGAGCGGGGGTGCG
GGTGGGGATGGAGACCCGGCGGGTGGCACTGCAAGTGGAAACGAACCCGG
CAAGGGCGGCAGGCCAATTTCGGTGTGTTGTAGCACGATACGGAGCTGGC
TGAAGACCATGGGCTACTCTCGCGTCAAGGGGGAAAAGGGTTTTACATTC
GCCGCCCCAGAGGCCACGACGTTATAAATGCTTGCGCACTACTTCAATCT
CCTCAAGCCAGAGATTAATAACCACAACCAGGCGGTATGCCAGACTGCCG
ATTACCTGCTGTTTTCGAAGGAGTCGGTCAGAAAGGCCGTGGGGAGCTGG
ACATCATACGGCGAGATCCGTGTCGCGCGCAGGAGTGGCCCTACCGGGGG
GGGGCTCACCGCCGACGTCAAGACGCACCTAGCGAGTTGTGTGGAGCAGC
TGAACCAGGAGGGAGATGTCAGCTTTGGCAAGCTTCGGGCGATGCTGAGG
AGCCCTCTCAGCGCGAGCGGGGGTGCGGGTGGGGATGGAGACCCGGCGGG
TGGCACTGCAAGTGGAAACGAACCCGGCAAGGGCGGCAGGCCAATTTCGG
TGTGTTGTAGCACGATACGGAGCTGGCTGAAGACCATGGGCTACTCTCGC
GTCAAGGGGGAAAAGGGTTTTACATTCGCCGCCCCAGAGGCCACGACGTT
ATAA
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