mRNA_L-elsbetiae_contig2021.6079.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2021.6079.1
Unique NamemRNA_L-elsbetiae_contig2021.6079.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2021.6079.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.680e-51
Identity = 103/176 (58.52%), Postives = 125/176 (71.02%), Query Frame = 1 
Query:    1 AARIALGKFEVILRQDCLSTDLALLRPYLGSSDEAAPAAAADMPSEVGTDSVSSDNVGERGEEDLLVLPPGAEGQRLVRSNRWDLQLWNFADGLAASRSSTLDGYLCGSSKLARYQNTPGKGRRAVVFNSPEFHLTGVSMFSCTLMSIGYHVTAVVQRPVAGFEQLLPCAHVVIPL 528
            AARIALGKFEV+LR DCL+ DL LL+PYL    +A PAA      +V   +  ++++ E GE   LV   G EG +L+R NRWDLQLW+FA  L  SRS+T +GYLCGSS  AR Q  PG GRRAVV+NSP FH+TGV+MFSC LMS+G+ VTAVV+ P AGFE LLPC   V+ L
Sbjct:  159 AARIALGKFEVLLRADCLAVDLPLLQPYLA---KAVPAA------QVADAARETEDLLESGEAHYLVF--GKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSASARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVAL 323
[Close]
BLAST of mRNA_L-elsbetiae_contig2021.6079.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.370e-51
Identity = 103/176 (58.52%), Postives = 125/176 (71.02%), Query Frame = 1 
Query:    1 AARIALGKFEVILRQDCLSTDLALLRPYLGSSDEAAPAAAADMPSEVGTDSVSSDNVGERGEEDLLVLPPGAEGQRLVRSNRWDLQLWNFADGLAASRSSTLDGYLCGSSKLARYQNTPGKGRRAVVFNSPEFHLTGVSMFSCTLMSIGYHVTAVVQRPVAGFEQLLPCAHVVIPL 528
            AARIALGKFEV+LR DCL+ DL LL+PYL    +A PAA      +V   +  ++++ E GE   LV   G EG +L+R NRWDLQLW+FA  L  SRS+T +GYLCGSS  AR Q  PG GRRAVV+NSP FH+TGV+MFSC LMS+G+ VTAVV+ P AGFE LLPC   V+ L
Sbjct:  163 AARIALGKFEVLLRADCLAVDLPLLQPYLA---KAVPAA------QVADAARETEDLLESGEAYYLVF--GKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSTSARRQRMPGDGRRAVVYNSPSFHVTGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVAL 327
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2021.6079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSI2_ECTSI1.680e-5158.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKJ1_9PHAE2.370e-5158.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2021contigL-elsbetiae_contig2021:3871..6248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size667
Cds size663
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2021.6079.1prot_L-elsbetiae_contig2021.6079.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2021 3871..6246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815835.872715-CDS-L-elsbetiae_contig2021:3870..40041622815835.872715-CDS-L-elsbetiae_contig2021:3870..4004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 3871..4004 +
1691683135.1390746-CDS-L-elsbetiae_contig2021:3870..40041691683135.1390746-CDS-L-elsbetiae_contig2021:3870..4004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 3871..4004 +
1622815835.885239-CDS-L-elsbetiae_contig2021:4625..47491622815835.885239-CDS-L-elsbetiae_contig2021:4625..4749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 4626..4749 +
1691683135.152107-CDS-L-elsbetiae_contig2021:4625..47491691683135.152107-CDS-L-elsbetiae_contig2021:4625..4749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 4626..4749 +
1622815835.9001894-CDS-L-elsbetiae_contig2021:4992..50821622815835.9001894-CDS-L-elsbetiae_contig2021:4992..5082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 4993..5082 +
1691683135.1607623-CDS-L-elsbetiae_contig2021:4992..50821691683135.1607623-CDS-L-elsbetiae_contig2021:4992..5082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 4993..5082 +
1622815835.9120488-CDS-L-elsbetiae_contig2021:5498..56211622815835.9120488-CDS-L-elsbetiae_contig2021:5498..5621Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 5499..5621 +
1691683135.1748328-CDS-L-elsbetiae_contig2021:5498..56211691683135.1748328-CDS-L-elsbetiae_contig2021:5498..5621Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 5499..5621 +
1622815835.9241471-CDS-L-elsbetiae_contig2021:6054..62461622815835.9241471-CDS-L-elsbetiae_contig2021:6054..6246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 6055..6246 +
1691683135.1865597-CDS-L-elsbetiae_contig2021:6054..62461691683135.1865597-CDS-L-elsbetiae_contig2021:6054..6246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 6055..6246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2021.6079.1

>prot_L-elsbetiae_contig2021.6079.1 ID=prot_L-elsbetiae_contig2021.6079.1|Name=mRNA_L-elsbetiae_contig2021.6079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
AARIALGKFEVILRQDCLSTDLALLRPYLGSSDEAAPAAAADMPSEVGTD
SVSSDNVGERGEEDLLVLPPGAEGQRLVRSNRWDLQLWNFADGLAASRSS
TLDGYLCGSSKLARYQNTPGKGRRAVVFNSPEFHLTGVSMFSCTLMSIGY
HVTAVVQRPVAGFEQLLPCAHVVIPLRNPPPGAAESNNNVTSSSSTSDAA
LFDRSEIILNSTVAHMLGLPA
back to top

mRNA from alignment at L-elsbetiae_contig2021:3871..6248+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2021.6079.1 ID=mRNA_L-elsbetiae_contig2021.6079.1|Name=mRNA_L-elsbetiae_contig2021.6079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2378bp|location=Sequence derived from alignment at L-elsbetiae_contig2021:3871..6248+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCGAATCGCGCTCGGAAAGTTCGAGGTCATACTGCGGCAGGACTG
CCTTTCGACAGACCTCGCGCTGCTCAGGCCTTACCTCGGCTCCAGCGACG
AGGCTGCGCCTGCTGCTGCTGCGGACATGCCGAGGTACGGGGACAGGTGA
AACACTTGCCGTACTGCCAGGGGCTTGTGTAATCGTGTTGTGGTATGCCT
TGTGCGGTTAGTTTTCATTGTGTGATCGATCGATCGATCGATCGACGACC
GCACTGGGGTCGTAGTGGGGAAGTTAGGGGCACCTCTGATACAACCTTCA
CGCGAAGTGGGCACGCTGTACGCGTTGACGATACAGCCAACAACGCGTAT
TTAAATAGCAGTGTTTTTGACAGCACCTCCTGCCGCCGAGCGCGTGCAAC
CGTGCCTTTTTCAAAGCGCTTGCGCCGTTCTCCCTCCGCTTTTTCTGTCT
TCAGGCAGTCAAAGTGTATGGTATTGTTATTGTTGTTGCCGTCTTTGCAA
AGTGAAAACGTGGTGCTAATCCTTTCGAGTGAGCGAAAGACAGAGAACGC
ATCAAATCAAGTTGACTAACTCGTGTTGATCTCAATATTTGAACAATTGA
ACAAGTGACCACACACGAACATGTGTCCGTTTCTCTCCTATTTGTACTTG
CTTGTATCTCTGCCTGCTCTTGTTGCTCTGTGTCTTCGCGTCTTCTCTAT
CTCTCTCGCTCGCTCCCTCTCTCTTATCTCGACTCCCGTCTCCTCGACCC
AGCAGCGAGGTTGGGACGGATAGCGTTAGCTCCGACAACGTCGGAGAACG
AGGAGAGGAAGACCTCCTTGTCCTGCCTCCGGGGGCGGAGGGACAACGCC
TTGTCAGGTCGAACCGCTGGGATTTGCAGGTGACAACTATTTCCGCCGCT
CGTGACTTGTTTGCGCCTCCCAGTCCAGGTAGTAAAAGCATTCCCGCCCA
CTCACGGATGAAGCCGAGCACCTATTCATCAGTACGATTGCAATCTCTGC
CTGCCTGTGCCGCCGTCTGTGTTTTCCTTGCCCCGTCTGCTATGCTCACC
GTCGGGGTGGCATGGGGTCGGGTGATGTGGTGTGGCGCGGTGCGGTGCGT
CACACGTCACGTCACGTCACAGCTCTGGAACTTCGCGGACGGGCTAGCCG
CCTCCAGGAGCAGCACTCTGGATGGATACCTCTGCGGCTCCTCGAAGTTG
GCGAGATATCAGGTGCTGGCTTGGCGGCTCTCTTGGCGGCCCCCCTGGTT
GGCGGCACTGTGTAATCTATGCAATTAAAGTCATCAAAGGTTGTGTGTTG
TTAGGTCGCAGGAAGTTTAGGTGAGCTTTTTTTATTTTTGAAATGGAGGC
TAAACCCTGACTTGGAGGTATGTACGATCTCTATTTTTAGATTTGTGCAC
AAAAGTTACTAGATACTGTATGTTTTGCGTGAATTCCCACACAGGGATGG
GGGGATCTTCCTTTGGAAGTTGAAAAAAAGAGTTCCCCCGGCGGAGAACT
CAAGTTTGGGGAGAAGACTTTTCGTTTTTCTCAACCTCCTCCCTCGTGCT
GCGCTGTTGATGCACCGTTGCTACGCTGCGTACTGTACTGCTTTTCGCTT
CTCTGTTTTGCGGCGGCGGGGGCGGCAGAATACCCCGGGCAAAGGACGAC
GCGCCGTGGTGTTCAACTCCCCCGAGTTCCACCTGACCGGAGTGTCGATG
TTTTCCTGCACCTTGATGTCGATTGGATACCACGTCACGGCCGTCGTACA
GGTAAAAAAGTGAACCCCCCGAGGTGTAGAACCCCCTCCCTGCGCGCGCG
CGTCTTTGAAATACCGAGGTGGTGTTTTACTGTTCTTGATCTGTGTTTCG
ATGGCCATCGTACTGGGAGGGGGCGGGTCGTGGTGCTTGAATCTGCGCGA
ACACGCTGACGAACAGATTGACGATTGATGACACCCCGAGAGCTACAACT
CGCGAGACTGTGTGGGCATACCACCATCCCGTCTTTCCCTGGACCGCCTT
TTTGCCCTCTTCTCTTTTTATTTTGTCTCGCTCACAATCATACCCATGCA
CCGGCGAAAAGCTACCTATATTGTATTGTAGCGCATATTGCGCGCAACAC
CACTCTGTTATCTCAGGCTCAAACTTTCACGTATTTCTCTTTTCCCGGCC
GTAACGACAAATCGTCGTTCGCGATCCATGGCAGAGACCCGTTGCGGGCT
TCGAACAGCTTCTGCCTTGCGCCCACGTGGTCATCCCGCTGCGGAACCCC
CCACCTGGTGCCGCGGAATCCAACAACAACGTCACTAGCAGCAGCAGCAC
CAGCGATGCAGCCTTGTTCGACCGCAGCGAGATCATACTGAATTCTACCG
TTGCACACATGCTGGGCCTGCCAGCGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2021:3871..6248+

>mRNA_L-elsbetiae_contig2021.6079.1 ID=mRNA_L-elsbetiae_contig2021.6079.1|Name=mRNA_L-elsbetiae_contig2021.6079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig2021:3871..6248+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCGAATCGCGCTCGGAAAGTTCGAGGTCATACTGCGGCAGGACTG
CCTTTCGACAGACCTCGCGCTGCTCAGGCCTTACCTCGGCTCCAGCGACG
AGGCTGCGCCTGCTGCTGCTGCGGACATGCCGAGGCGGCGCGAATCGCGC
TCGGAAAGTTCGAGGTCATACTGCGGCAGGACTGCCTTTCGACAGACCTC
GCGCTGCTCAGGCCTTACCTCGGCTCCAGCGACGAGGCTGCGCCTGCTGC
TGCTGCGGACATGCCGAGCGAGGTTGGGACGGATAGCGTTAGCTCCGACA
ACGTCGGAGAACGAGGAGAGGAAGACCTCCTTGTCCTGCCTCCGGGGGCG
GAGGGACAACGCCTTGTCAGGTCGAACCGCTGGGATTTGCAGCGAGGTTG
GGACGGATAGCGTTAGCTCCGACAACGTCGGAGAACGAGGAGAGGAAGAC
CTCCTTGTCCTGCCTCCGGGGGCGGAGGGACAACGCCTTGTCAGGTCGAA
CCGCTGGGATTTGCAGCTCTGGAACTTCGCGGACGGGCTAGCCGCCTCCA
GGAGCAGCACTCTGGATGGATACCTCTGCGGCTCCTCGAAGTTGGCGAGA
TATCAGCTCTGGAACTTCGCGGACGGGCTAGCCGCCTCCAGGAGCAGCAC
TCTGGATGGATACCTCTGCGGCTCCTCGAAGTTGGCGAGATATCAGAATA
CCCCGGGCAAAGGACGACGCGCCGTGGTGTTCAACTCCCCCGAGTTCCAC
CTGACCGGAGTGTCGATGTTTTCCTGCACCTTGATGTCGATTGGATACCA
CGTCACGGCCGTCGTACAGAATACCCCGGGCAAAGGACGACGCGCCGTGG
TGTTCAACTCCCCCGAGTTCCACCTGACCGGAGTGTCGATGTTTTCCTGC
ACCTTGATGTCGATTGGATACCACGTCACGGCCGTCGTACAGAGACCCGT
TGCGGGCTTCGAACAGCTTCTGCCTTGCGCCCACGTGGTCATCCCGCTGC
GGAACCCCCCACCTGGTGCCGCGGAATCCAACAACAACGTCACTAGCAGC
AGCAGCACCAGCGATGCAGCCTTGTTCGACCGCAGCGAGATCATACTGAA
TTCTACCGTTGCACACATGCTGGGCCTGCCAGCGAGACCCGTTGCGGGCT
TCGAACAGCTTCTGCCTTGCGCCCACGTGGTCATCCCGCTGCGGAACCCC
CCACCTGGTGCCGCGGAATCCAACAACAACGTCACTAGCAGCAGCAGCAC
CAGCGATGCAGCCTTGTTCGACCGCAGCGAGATCATACTGAATTCTACCG
TTGCACACATGCTGGGCCTGCCAGCG
back to top