mRNA_L-elsbetiae_contig2021.6078.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2021.6078.1
Unique NamemRNA_L-elsbetiae_contig2021.6078.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2021.6078.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 4.530e-30
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:   40 PWFEGFTVPTATELVAAVVTIGHPIRRLLSYFVEEDISLEESLSWMDGEGIPANSSTHYRRGYQLVDNYLVRVLGGRAAWELPPGGVGAAELKAARIALGKFEVILR 360
            PWF+GF      + VAAV T+GHPI+R+L +   E + LEE +SW +  G  A++S+ YR+GYQ +DNYLVRVL G++AW+LPPG VG +EL+AARIALGKFEV+LR
Sbjct:   70 PWFDGFG---GRDGVAAV-TVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLR 172
[Close]
BLAST of mRNA_L-elsbetiae_contig2021.6078.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 4.640e-28
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 1 
Query:   40 PWFEGFTVPTATELVAAVVTIGHPIRRLLSYFVEEDISLEESLSWMDGEGIPANSSTHYRRGYQLVDNYLVRVLGGRAAWELPPGGVGAAELK----AARIALGKFEVILR 360
            PWF+GF      + VAAV TIGHPI+R+L +   E + LEE +SW +  G  A++S+ YR+GYQ +DNYLVRVL G++AW+LPPG VG  EL+    AARIALGKFEV+LR
Sbjct:   70 PWFDGFG---GRDGVAAV-TIGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLR 176
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2021.6078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSI2_ECTSI4.530e-3057.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKJ1_9PHAE4.640e-2856.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2021contigL-elsbetiae_contig2021:2215..3912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2021.6078.1prot_L-elsbetiae_contig2021.6078.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2021 2215..3912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815835.8102314-CDS-L-elsbetiae_contig2021:2214..24011622815835.8102314-CDS-L-elsbetiae_contig2021:2214..2401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 2215..2401 +
1691683135.109957-CDS-L-elsbetiae_contig2021:2214..24011691683135.109957-CDS-L-elsbetiae_contig2021:2214..2401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 2215..2401 +
1622815835.8220553-CDS-L-elsbetiae_contig2021:3076..32071622815835.8220553-CDS-L-elsbetiae_contig2021:3076..3207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 3077..3207 +
1691683135.1200612-CDS-L-elsbetiae_contig2021:3076..32071691683135.1200612-CDS-L-elsbetiae_contig2021:3076..3207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 3077..3207 +
1622815835.834757-CDS-L-elsbetiae_contig2021:3870..39121622815835.834757-CDS-L-elsbetiae_contig2021:3870..3912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 3871..3912 +
1691683135.130119-CDS-L-elsbetiae_contig2021:3870..39121691683135.130119-CDS-L-elsbetiae_contig2021:3870..3912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2021 3871..3912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2021.6078.1

>prot_L-elsbetiae_contig2021.6078.1 ID=prot_L-elsbetiae_contig2021.6078.1|Name=mRNA_L-elsbetiae_contig2021.6078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MKQQQQQQQQQPQPWFEGFTVPTATELVAAVVTIGHPIRRLLSYFVEEDI
SLEESLSWMDGEGIPANSSTHYRRGYQLVDNYLVRVLGGRAAWELPPGGV
GAAELKAARIALGKFEVILR
back to top

mRNA from alignment at L-elsbetiae_contig2021:2215..3912+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2021.6078.1 ID=mRNA_L-elsbetiae_contig2021.6078.1|Name=mRNA_L-elsbetiae_contig2021.6078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1698bp|location=Sequence derived from alignment at L-elsbetiae_contig2021:2215..3912+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCCGTGGTTTGA
GGGGTTTACAGTACCAACAGCTACGGAACTTGTGGCGGCGGTGGTGACCA
TCGGGCACCCCATACGGCGCCTGCTGTCGTACTTTGTCGAGGAAGACATC
TCGCTAGAGGAATCCTTGAGTTGGATGGACGGTGAAGGTGAGAGGTTGAA
ACCGCACCACCTTTTCTTCGATTTTTTGTCTGCATGTGCACGAAACACGC
AGCAACGGATGCTCATCGATGCGCGTGTGCCTGAAGGCGCCAATGTGAAG
AGGTAGTGCACGAACCTGCCACACGGACCCCCACACCTGCGGCGAAAGTT
TTTTCCTCCGACCCAGGAGGCTTTCCATTAAGCGCAAAGCGCGTGGAAAC
AGGGACGTACAGGGGCACCAGGTGACAAACAGCTTTTGCTCGGACGCCGG
TCACAGTATAAATAGCCGCGAACCCAACGGCCAGGCCCAAATAGAATCGA
ACTACCGGCAGGGTTTAGGCTCCTGGCCGAAGTCGCAGAAGCACCTATTC
GGACGTGTTCAGCGTAGTTCAGTCACCCAGCTGCAAGAACAGCGCTCAAC
CTCAGCTTGATACTCAGGAACCTACGCGGCGCCTTTCTGGTGACGTACAC
ACGTGCGTCCTGCTGGAATCGATGTCCTACAATAGATACCTATGTACATA
TCTGTCTCGCAGCTCTTGCCGTCAGAGCACATGTACAAGTATGCACTGTT
CAGGAAAAGATCTTCCGTCCTGTGCCCCCCTGCCTCCTGTCTAAAGGGGT
TGGTCCAACTACTCGGCACATATCTATGCATGTTTCGGCTTGGCTGGTCG
TTACCACGGCAGGTATCCCTGCCAACTCGTCTACCCACTACCGGCGGGGC
TACCAACTTGTGGACAATTACTTGGTCCGTGTGCTGGGTGGGCGGGCCGC
GTGGGAGTTACCGCCTGGGGGGGTCGGAGCCGCTGAGCTCAAGGTCGGTG
GGGTGGTTTTAGGGCGAGGGCGTTGTCTTTTGTTGCTTGCCTTTTTCTCT
TTTTGCCATCGACGGCATTTTCGAGTTGGAGAACCACCATGCCTGCTTGT
GATGTAGAGGTACCGCCAACATTTTGGGCACTCTTTACGTGTTTTTCCCG
CAGTGTTCTGCGCCTGTACCAAGTATTTTGCGTTATGAGTTTTTCTCACC
GCTTTCGGTGGGCTTTGGCATCCACCGTGTACCCTCTGTGTTTGTACCGC
AACGAATACATACAGCGTTCTAGGGCGAGCGTTTTGGTTGTTATTTCCGT
CTTTTTGTGACGCAGATTTCGAAGCTGTGTTCCTTTGTTTTGAAAGCGAA
AGCTGGAAAGGGAAAATGTTCTCCATCCCGCCGCTTTTCCCCTCTCAGTA
CGGGGCATAAACTTCATTTCGGTTTCAACCACCACTTGCCGGGTTACGTT
TTGTTTGTGCTGACCATTGCAGCGGACTCTTGTACTGTATGGCTCTCTGT
GTTTTTGGTATGCCAGGGTACTACTGTACACGCGCACGGGCTTTAAACTC
CTTGCGCTAACGACTATTTTTGACGAGGAATGCCATTGTGAGGCAACATA
CCTTAGCGTGACCTTTCTCCCGCCTCGGTGCCGTACGCCGATGCCGTCCT
CGCCAGGCGGCGCGAATCGCGCTCGGAAAGTTCGAGGTCATACTGCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2021:2215..3912+

>mRNA_L-elsbetiae_contig2021.6078.1 ID=mRNA_L-elsbetiae_contig2021.6078.1|Name=mRNA_L-elsbetiae_contig2021.6078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig2021:2215..3912+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCCGTGGTTTGA
GGGGTTTACAGTACCAACAGCTACGGAACTTGTGGCGGCGGTGGTGACCA
TCGGGCACCCCATACGGCGCCTGCTGTCGTACTTTGTCGAGGAAGACATC
TCGCTAGAGGAATCCTTGAGTTGGATGGACGGTGAAGATGAAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCCGCAGCCGTGGTTTGAGGGGTTTACAGTA
CCAACAGCTACGGAACTTGTGGCGGCGGTGGTGACCATCGGGCACCCCAT
ACGGCGCCTGCTGTCGTACTTTGTCGAGGAAGACATCTCGCTAGAGGAAT
CCTTGAGTTGGATGGACGGTGAAGGTATCCCTGCCAACTCGTCTACCCAC
TACCGGCGGGGCTACCAACTTGTGGACAATTACTTGGTCCGTGTGCTGGG
TGGGCGGGCCGCGTGGGAGTTACCGCCTGGGGGGGTCGGAGCCGCTGAGC
TCAAGGTATCCCTGCCAACTCGTCTACCCACTACCGGCGGGGCTACCAAC
TTGTGGACAATTACTTGGTCCGTGTGCTGGGTGGGCGGGCCGCGTGGGAG
TTACCGCCTGGGGGGGTCGGAGCCGCTGAGCTCAAGGCGGCGCGAATCGC
GCTCGGAAAGTTCGAGGTCATACTGCGGGCGGCGCGAATCGCGCTCGGAA
AGTTCGAGGTCATACTGCGG
back to top