mRNA_L-elsbetiae_contig2020.6073.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI) HSP 1 Score: 389 bits (1000), Expect = 1.360e-134 Identity = 197/213 (92.49%), Postives = 207/213 (97.18%), Query Frame = 1 Query: 319 MEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957 MEGSGPRLSDEGHK+YR+RQTCMKMLEKRGYNVLQEHVSMTSE F ++GP+P RH+LTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKM EE+VK+AIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVL+SEQKAELLKRYKLKDTQLPRIQSTDPVARF+GM QKGQVCKITRPSETAGRYVTYRLCI Sbjct: 1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGM-QKGQVCKITRPSETAGRYVTYRLCI 212
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA) HSP 1 Score: 281 bits (718), Expect = 9.980e-92 Identity = 140/210 (66.67%), Postives = 176/210 (83.81%), Query Frame = 1 Query: 340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVS----MTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957 LS EG K++R+R+TC+KML KRGYNV EH+S ++ F +FG +P R +T+LVEKVDDP D+IFVFFPD+EKVGVK IR+Y ++M++E+V+K+IIV++GG+TP +R A +LC QR VQ+EDFKDAELM+DIT+H LVPEHQVL +E+KAELLKRYKL DTQLPRI STDPVAR+YG+ Q+GQV KI RPSETAGRYVTYRLC+ Sbjct: 5 LSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGL-QRGQVVKIIRPSETAGRYVTYRLCM 213
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD) HSP 1 Score: 239 bits (611), Expect = 1.260e-75 Identity = 119/203 (58.62%), Postives = 161/203 (79.31%), Query Frame = 1 Query: 340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 948 L+ E ++YRVR+T +KML RGY V + + MT E FQH+FG +P R +T+LVEK+DDP D +FVFFP+D KVGVKPIR++ +M++E+V KAI+V++ GITPFAR A+ E+ + ++E FK+ EL++DITEHTLVP H+VL ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+ +GQV KI RPSETAGRYVTYR Sbjct: 4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGI-TRGQVVKIIRPSETAGRYVTYR 203
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH) HSP 1 Score: 237 bits (605), Expect = 1.200e-74 Identity = 122/206 (59.22%), Postives = 164/206 (79.61%), Query Frame = 1 Query: 340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957 L+ E K++RVR+TC+KML KRGY V + + M+++ F+ +FG P R +LT+L EK DDP DQIFVFFP+DEKVGV PI+ Y ++M+ +V +AIIV+K +TPFAR+A++E+ + R +VE F+DAEL++DITEH LVPEH VLT +QK ELL+RY+LK +QLPRIQ DP+AR+ G++Q GQV KI RPSETAGRYVTYR+C+ Sbjct: 8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQ-GQVVKIVRPSETAGRYVTYRICV 211
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA) HSP 1 Score: 236 bits (602), Expect = 2.810e-74 Identity = 119/203 (58.62%), Postives = 160/203 (78.82%), Query Frame = 1 Query: 340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 948 L+ E K++RVR+T +KML RGY V +E + T E F +FG +P R +T+LVEKVDDP D +FVF+P+D KVGVKPIR+Y +M++E+V KAI++++ GITPFA+ A+ E+ + +++ FK+ EL++DITEHTLVP H+VLT E+K LLKRYKLKDTQLPR+Q++DP+AR+YGM +GQV KI RPSETAGRYVTYR Sbjct: 3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGM-SRGQVVKIIRPSETAGRYVTYR 202
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC) HSP 1 Score: 233 bits (595), Expect = 3.540e-73 Identity = 117/203 (57.64%), Postives = 159/203 (78.33%), Query Frame = 1 Query: 340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYR 948 L+ E ++YRVR+T +KML RGY V + + T++ F +FG +P R +T+LVEKVDDP D +FVF+PDD KVGVKPIR+Y +M++E+V KAI++++ GITPFA+ A+ E+ + +++ FK+ EL++DITEHTLVP H+VLT E+K LLKRYKLKD+QLPR+Q +DP+AR+YGM +GQV KI RPSETAGRYVTYR Sbjct: 6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGM-TRGQVVKIIRPSETAGRYVTYR 205
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA) HSP 1 Score: 234 bits (598), Expect = 1.150e-72 Identity = 119/206 (57.77%), Postives = 160/206 (77.67%), Query Frame = 1 Query: 340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957 L+ E ++YRVR+T +KML R Y V + + MT E FQ +FG +P R +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y +M++E+V KAI+V++ GITPFAR A+ E+ + ++E FK+ EL++DITEHTLVP H+VL ++KA LLKRY+++D+QLPR+Q TDP+AR+YGM +GQV KI RPSETAGRYVTYR I Sbjct: 75 LTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGM-TRGQVVKIIRPSETAGRYVTYRAVI 277
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A6S9BLJ2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BLJ2_9STRA) HSP 1 Score: 233 bits (593), Expect = 1.410e-72 Identity = 121/206 (58.74%), Postives = 159/206 (77.18%), Query Frame = 1 Query: 340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957 L+ E ++YRV +T MLEKRGY V +E +M+++ F +FG P R +LT+LVEK DD +Q+FVFFP DEKVGVKPI+ ++KM+EE V AI+V++ IT FA+ A+QE+ ++E FK+AEL++DITEH LVPEHQVL+ +K ELLKRY+LK+TQLPRIQ DPVAR+YGM ++GQV KI RPSETAGRYVTYR+C+ Sbjct: 27 LTPEASRLYRVYKTVAAMLEKRGYMVPREIRTMSADAFTQKFGEKPTRQSLTILVEKADDESNQLFVFFPIDEKVGVKPIKELTDKMKEETVSNAILVLREDITAFAKQAVQEM--SDSFRIEHFKEAELLVDITEHNLVPEHQVLSKNEKEELLKRYRLKETQLPRIQPNDPVARYYGM-KRGQVVKIIRPSETAGRYVTYRICM 229
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA) HSP 1 Score: 237 bits (605), Expect = 4.070e-72 Identity = 119/206 (57.77%), Postives = 162/206 (78.64%), Query Frame = 1 Query: 340 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957 L+ E +++RVR+T +KML RGY V + + MT E FQ +FG +P R +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y +M++E+V KAI+V++ GITPFAR A+ E+ + ++E FK+ EL++DITEHTLVP H+VL+ ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+ +GQV KI RPSETAGRYVTYR I Sbjct: 4 LTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGI-TRGQVVKIIRPSETAGRYVTYRAVI 206
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Match: B8C1Q1_THAPS (RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1Q1_THAPS) HSP 1 Score: 231 bits (588), Expect = 7.290e-72 Identity = 122/223 (54.71%), Postives = 162/223 (72.65%), Query Frame = 1 Query: 289 PRQPQ*AVENMEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGPDPQRHNLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMQEEDVKKAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQQKGQVCKITRPSETAGRYVTYRLCI 957 P +P A + S L+ E +++RV +T ML KRGY V +E MT F FG P R LT+LVEK DD +Q+FVFFP+DEKVGVKPI+ +++M++E+V AI+V++G ITPFA+ A+ E+ ++E FK+AEL++DITEHTLVPEH VL+ +K ELLKRY+L++TQLPRIQ DPVAR+YGM ++GQV KI RPSETAGRYVTYR+C+ Sbjct: 7 PTEPPTANNTPQTSSSSLTPEASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRFGEYPSREGLTILVEKADDETNQLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEM--SDSFRLEHFKEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRLRETQLPRIQPNDPVARYYGM-KRGQVVKIIRPSETAGRYVTYRICM 226 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2020.6073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2020.6073.1 >prot_L-elsbetiae_contig2020.6073.1 ID=prot_L-elsbetiae_contig2020.6073.1|Name=mRNA_L-elsbetiae_contig2020.6073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=214bp MEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEVFQHEFGback to top mRNA from alignment at L-elsbetiae_contig2020:3850..7756+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2020.6073.1 ID=mRNA_L-elsbetiae_contig2020.6073.1|Name=mRNA_L-elsbetiae_contig2020.6073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3907bp|location=Sequence derived from alignment at L-elsbetiae_contig2020:3850..7756+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2020:3850..7756+ >mRNA_L-elsbetiae_contig2020.6073.1 ID=mRNA_L-elsbetiae_contig2020.6073.1|Name=mRNA_L-elsbetiae_contig2020.6073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1284bp|location=Sequence derived from alignment at L-elsbetiae_contig2020:3850..7756+ (Laminarionema elsbetiae ELsaHSoW15)back to top |