mRNA_L-elsbetiae_contig2019.6069.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2019.6069.1 vs. uniprot
Match: A0A6H5KD78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD78_9PHAE) HSP 1 Score: 880 bits (2273), Expect = 1.530e-297 Identity = 616/1270 (48.50%), Postives = 719/1270 (56.61%), Query Frame = 1 Query: 193 DLSKRKCKFELEKAAAGGWHQGRLFYYRLPVDRPGLYTVRLTVVSYHNDERRRDGVKLGLEDLMEVRLQCLKTIGRIVVPIMRGKGVVAMGFDESMGVVEFSTVALGGEILLEVEGIYSCIGLSLVEVFFHDEQK--------------------NAATSLETLRAAWDGGAGAFCAQKYASDANRRSPVSA---SSSTAQEQRYFDEWARRERLEDSAGRFCKPRTAPQHGERGWTWAGHSDRAERE----SRKMEEGTIFIPPSNTKPGEEETGSSFKAIL--DGVL--AQKDGKPLSLAEWKQVSVVAGG---GIGXXXXXXXXXXXXXXXXXXXXXXLSLHSYRRHRWRAQPSTAPYPXXXXXXXXIPTVCNAVDKNELTQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVFADGNSSGPSRRSLLALSVVAEEVAGPVATSPKGSFSYSRKAQPLDGGEA----AAKEVARAEEVPDTVVI----------------IRRGASAKNK-LVNPT---PPPRCPSRLVEFVEEALHVEAR-----SKNTAAAAAASPLPSPRAGHHAHIAAATTXXXXXXXXXXSDDGTNGDATQKDGRNGGVFAGRRPAPSSASGRSPPGP------PPAIVAALIADGAAAAVNRARSRAERGDGQGNGLGRERWEATLGRGVLPTWLGGVAEVEW--EEGPTNSKAATAAVP-----------MPRSLVAQQALGSGFQAIAAYRAHEVEGWKGGGPSRSTAGPQNGGXXXXXXXSAPGEP------RLLPMRFTGFTWDGVTVVAKETVAGCAITANPVISALSTAPDGALGLSEWGQVGSGG----------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKTRS-PCLSVEAAFVPTESIVVDIVVPVSAGLVPRLRTLLPQMERLAKGSGCTPHPPSHPLAPQCNEADYYPPAFWPERLGVRGLASSGWASGLDLSGVLAAKGRGRRLRGG-GEAEGSGGPGEKNGKKPADAAAAAAGRREGSNVRVVVVTEDPGVEALLEEYDVETVFVLSKAPFSKAVAIQDASSSIPDDHIMFIHDADLFPPCTLPDALRQTVVQGVQAVNLMLAYENQPVPGKCAYHWSTFGPMAMYASDFRAAGGIADANSGRWGYEDTAFVHKVMLGDSPLGVLRVHLPGLVHRWHEITPWKCQTWVWGGLPAGRDGGEGSDGGIV 3684 D ++ CK+ELE+AA GGWHQG+LFYYRLPV++PGLYTVRLTVV +HND+RR DG+ LG+++LMEVRLQC+ + G +VVP + + ESMGVVEF TVALGGEILLE EGIY+CIGLSL+E F+HDEQ+ AA L LRAAWD GAG CA+KY+S+A RR + A SS+TAQEQ+YFDEWARRERLEDS GR+C+P P+ GE GWTWA HS+R RE +R EE + + + SS ++++ + + A+K+G L A+ V G L+ + P AP + V VD ELTQR XX XXXX G P RR+LL + E + AT+ GS +Y RK G AA + + + + G AK + +NP PPPRCPSRLVE +EEAL VEAR S+ A A P P+ R G +A A+T XXXXXXX + DG + + R S+A P PA+ AL+ DGAAAA +RARSRAERGDG+GNG RE WE +LG GVLP+WL G+A +W E AA AV +PRS+VAQQALGSGFQAIAAYRAHEV GWKGGG S S GG S P LLP+RFTGFTWDG TVVAKET GCA TA P + LST SEWG+ G XXXXXXXXXXXXXXXX G+ R PCL VEAAFVPT IVVDIVVPVSAGLVPRL+TLLPQME+LAKGSGCTPH PS PLAPQCN+AD Y PAFWPE L +RG + S W+ GLD S +L G LRGG E++G+ GK A A A +E S+ RVVV TEDP VEA+LE YDVETVFVLS +PFSKA+AIQDAS+ IPDDHIMF+HDADLFPPCTLPDALRQTVVQGVQAVNL+LAYENQPVPG C Y STFGPMAMYASD+RA GGIADANSGRWGYEDTAFVHKVMLG+ PLGVLRVHLPGLVHRWHEITPWKC WVWGG P+G SD G V Sbjct: 7 DGNQENCKYELEQAAKGGWHQGQLFYYRLPVEQPGLYTVRLTVVFFHNDQRRGDGITLGVDELMEVRLQCVASRGHVVVPAKK----IGKDMSESMGVVEFHTVALGGEILLEAEGIYTCIGLSLIETFYHDEQQLQAPVVPGRHNKDEVRIPHTMAAAELAPLRAAWDDGAGTLCAEKYSSEATRRGSLQAMSPSSTTAQEQKYFDEWARRERLEDSVGRYCRPHRPPRWGEPGWTWADHSERVLRERAEATRTEEENKARRQEAANGHAKVSSASSVRSVIFYEAAVEAAKKNGVSLGTAKILAAEAVEKALEDANGQPLTLVQGKESNEPPEPLPVPKLAQPRAGAVEQKTPPGPAP-------KAKVAWVGREVDTVELTQRRRQLLSVAAASTPIAADGKPAGGDSAIRQASTAQDQRQGDLVNKTGSSNAAGSLSGGGGDVAGTLSXXEDXXXXXXXXXG---APRRRALLGSANDIERIG---ATTKGGSVAYKRKTPSKKSGPGXXXXAAVDDGKGQADSGKXXXXXXXXXXXXXXXXXGTVEGGDDAKRRGRINPEDPIPPPRCPSRLVELLEEALRVEARRPAAPSRRIPPAGAGGPAPAAREG--TPVAVASTAXXXXXXXGYASDGGSKAGNXXXXXXXXXWRRLRLWQSTAPSEEEEKPGHDSNWSPAVAVALLQDGAAAAEDRARSRAERGDGKGNG--RELWEPSLGGGVLPSWLSGIA-ADWGREIAAKQQAAAAGAVXXXXXXXXXVAVLPRSVVAQQALGSGFQAIAAYRAHEVTGWKGGGDSGSVQNKAEGGSAGSGVGSTTEPPVGEDEKTLLPVRFTGFTWDGSTVVAKETAPGCARTAKPPPTKLSTPGQKLFEPSEWGEDGDRSLPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARRGMAESGDGGGMEGRLRQQPCLKVEAAFVPTREIVVDIVVPVSAGLVPRLKTLLPQMEKLAKGSGCTPHHPSAPLAPQCNDADRYAPAFWPETLAIRGQSPSEWSFGLDYSEILEGSPAGGGLRGGTAESDGT------KGKGHAAAXXXVAAVKESSSFRVVVATEDPAVEAMLENYDVETVFVLSSSPFSKALAIQDASTVIPDDHIMFVHDADLFPPCTLPDALRQTVVQGVQAVNLLLAYENQPVPGNCIYPLSTFGPMAMYASDYRAVGGIADANSGRWGYEDTAFVHKVMLGEKPLGVLRVHLPGLVHRWHEITPWKCMVWVWGGAPSGS---SSSDDGTV 1245
BLAST of mRNA_L-elsbetiae_contig2019.6069.1 vs. uniprot
Match: D7G308_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G308_ECTSI) HSP 1 Score: 514 bits (1324), Expect = 1.050e-158 Identity = 481/1326 (36.27%), Postives = 562/1326 (42.38%), Query Frame = 1 Query: 1 AVLGLQAAQGGLGWGTRTGGVVLADDAQEICGVPFEGNSLQKDRHFPALGFKPNAAMIAGGGSDDLSKRKCKFELEKAAAGGWHQGRLFYYRLPVDRPGLYTVRLTVVSYHNDERRRDGVKLGLEDLMEVRLQCLKTIGRIVVPIMRGKGVVAMGFDESMGVVEFSTVALGGEILLEVEGIYSCIGLSLVEVFFHDEQK--------------------NAATSLETLRAAWDGGAGAFCAQKYASDANRRSP---VSASSSTAQEQRYFDEWARRERLEDSAGRFCKPRTAPQHGERGWTWAGHSDRAERE----SRKMEEGT------------IFIPPSNTKPGEEETGSSFKAILDGVLAQK-----DGKPLSLAEWKQVSVVAGGGIGXXXXXXXXXXXXXXXXXXXXXXLSLHSYRRHRWRAQPSTAPYPXXXXXXXXIPTVCNAVDKN---------------------ELTQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVFADGNSS--------------GPSRRSLLALSVVAEEVAGPVATSPKGSFSYSRK-------------AQPLDG--------GEAAAKEVARAEEVPDTVVIIRRGASAKNKLVNP---TPPPRCPSRLVEFVEEALHVEAR-----SKNTAAAAAASPLPSPRAGHHAHIAAATTXXXXXXXXXXSDDGTNGDATQKDGRNGGVFAGRRPAPS------SASGRSPPGPPPAIVAALIADGAAAAVNRARSRAERGDGQGNGLGRERWEATLGRGVLPTWLGGVAEVEWEEGPTNSKAATA--------------------AVPMPRSLVAQQALGSGFQAIAAYRAHEVEGWKGGGPSRSTAGPQNGGXXXXXXXSAPGEP------RLLPMRFTGFTWDGVTVVAKETVAGCAITANPVISALSTAPDGALGLSEWGQ----------VGSGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKTRS-PCLSVEAAFVPTESIVVDIVVPVSAGLVPRLRTLLPQMERLAKGSGCTPHPPSHPLAPQCNEADYYPPAFWPERLGVRGLASSGWASGLDLSGVLAAKGRGRRLRGGGEAEGSGGPGEKNGKKPADAAAAAAGRREGSNVRVVVVTEDPGVEALLEEYDVETVFVLSKAPFSKAVAIQDASSSIPDDHIMFIHDADLFPPCTLPDALRQTVVQGVQAVNLMLAYENQPVPGKCAYHWSTFGPMAMYASDFRAAGGIADANSGRWGYEDTAFVHK 3525 AV AA+G +GWGTRTGGVV+A Q ICGVPFEGN+L+ FP F AM+A D K+ CK ELE+AA GGWHQG+LFYY G E ME R + L Y+CIGLSL+E F+HDEQ+ AA L LRAAWD GAGA CA+KY+S+A RR VS SS+TAQ+Q+YFDEWARRERLEDSAGR+C+P P+ GE GWTWA HS+R RE +RK EE +F + + IL +K +G+PL+L + K+ ++ AG +SL R R + Q + P PXXXXXXXX AV++ ELTQR XXXXXXXXXXXX XX A GN S P RR+LL + E + AT+ GS +Y RK A DG G+AAA+ E + + + + +NP TPPPRCPSRLVE +EEAL VEA+ S+ AAA P P+ + G + XXXXX T G+ SG P A+ AL+ DGAAAA +RARSRAERGDG+GNGLGRE WE +LG GVLP+WL G+A E + A A +PRS+VAQQALGSGFQAIAAYRAHEV GWKGGG S S GG S P LLP+RFTGFTWDG TVVAKET GCA TA P + LST SEWG+ G G G G+ R PCL VEAAFVPT IVVDIVVPV ETVFVLS +PFSKA+AIQDAS++IPDDHIMF+HDADLFPPCTLPDALRQTVVQGVQAVNL+LAYEN PVPG C Y STFGPMAMYASDFRA GGIADANSGRWGYEDTAF+HK Sbjct: 47 AVSAFIAAKGSIGWGTRTGGVVIAGKGQTICGVPFEGNTLRSREKFPDADFTATPAMVAV--VVDGKKKNCKDELEQAAKGGWHQGQLFYYS------------------------------GGE--MESRWE------------------------------------------LTSSWSYTCIGLSLIETFYHDEQQLQAPVVPGRHNKDEARLPHTMAAAELAPLRAAWDDGAGALCAEKYSSEATRRGSLQAVSTSSTTAQDQKYFDEWARRERLEDSAGRYCRPHRPPRWGEPGWTWADHSERVLRERAEATRKEEENKARRQEAADGHAKMFYEAAVEAAKKNGVSPGTAKILAAEAVEKALEGTNGQPLTLVQGKEAAMAAG-----------------------RVAISLLKARGGRNKQQGNEPPVPXXXXXXXXXXXHTGAVEQKAPAGPAPKAEVAGVGREVEIVELTQRRGRXXXXXXXXXXXXSTPIAADGKPAGGASGIRQASTAAGQDQQRGDLVAKTGSSNAAGSLLSGXXGD---------AAGNLSXXXXXXXXXXXXXGAPRRRALLGSANDIERIG---ATTKGGSVAYKRKTPSKKSGPGXXXAAAVDDGKGLADSEKGKAAAEGXXXXXEEKEKGTVEGGDDAKRGGRINPEDPTPPPRCPSRLVELLEEALRVEAKRPASLSRRIPPAAAGGPAPAAKEGAPVAVXXXXXXXXXXSGYAAVGGSTAGNXXXXXXXXXXXXXXXXXXXXXXXXXXEKSGHDSNWSP-AVAVALLQDGAAAAEDRARSRAERGDGKGNGLGRELWEPSLGGGVLPSWLSGIAADWGREIAAKQQTAAAXXXXXXXXXXXXXXXXXXXXVAMLPRSVVAQQALGSGFQAIAAYRAHEVTGWKGGGVSGSVQNKAEGGSAGSGVGSTTEPPVGGDEKPLLPVRFTGFTWDGSTVVAKETAPGCARTAKPPPTKLSTPRQRLFEPSEWGEDDDRSLPPSSEGGGRGRGGVAGSLDGGDAATQARRGMAESGDVGGGMEGRLRQQPCLKVEAAFVPTRDIVVDIVVPV-----------------------------------------------------------------------------------------------------------------------------------------ETVFVLSSSPFSKALAIQDASTAIPDDHIMFVHDADLFPPCTLPDALRQTVVQGVQAVNLLLAYENHPVPGNCIYPLSTFGPMAMYASDFRAVGGIADANSGRWGYEDTAFLHK 1123 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2019.6069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2019.6069.1 >prot_L-elsbetiae_contig2019.6069.1 ID=prot_L-elsbetiae_contig2019.6069.1|Name=mRNA_L-elsbetiae_contig2019.6069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1174bp MIAGGGSDDLSKRKCKFELEKAAAGGWHQGRLFYYRLPVDRPGLYTVRLTback to top mRNA from alignment at L-elsbetiae_contig2019:6657..18908+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2019.6069.1 ID=mRNA_L-elsbetiae_contig2019.6069.1|Name=mRNA_L-elsbetiae_contig2019.6069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12252bp|location=Sequence derived from alignment at L-elsbetiae_contig2019:6657..18908+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2019:6657..18908+ >mRNA_L-elsbetiae_contig2019.6069.1 ID=mRNA_L-elsbetiae_contig2019.6069.1|Name=mRNA_L-elsbetiae_contig2019.6069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7044bp|location=Sequence derived from alignment at L-elsbetiae_contig2019:6657..18908+ (Laminarionema elsbetiae ELsaHSoW15)back to top |