mRNA_L-elsbetiae_contig20166.6067.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20166.6067.1
Unique NamemRNA_L-elsbetiae_contig20166.6067.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig20166.6067.1 vs. uniprot
Match: A0A2B4R183_STYPI (Uncharacterized protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R183_STYPI)

HSP 1 Score: 330 bits (847), Expect = 2.620e-103
Identity = 213/456 (46.71%), Postives = 293/456 (64.25%), Query Frame = 1 
Query:    1 EISLELEAQNENNNLVQIDLSLEAQAYLRYKHKAANRDKLLKKLERANPHTTKQIFKKSKFICKQAVELAETVLKKIFSGKRVLLNHKYISKITECDSTDQNKRILDQLDDFFVIKYHRLAIVNGIPYNYHYSFELHPAIIEELKDAGLWDLGFMPAEMRLSYNNRPNIFSKNIIRSDVHTHESNFFNNSN---SSDSLSESVETTETKVSATETVEANVLVCKKKFK----SNARKKTTSAERKASKAKVYKFKQYDKP------KTLAEIEP-ITEAESKILQDKSVRSFTVVFQNELLQDLSRKL---HRTFESRWQFLN----YFAKVLHGEKRDEVKCAGLNFYIKARKTEEELAKHITQNQREFYMKKEEDAAIFNRSDYTQFRARIAGQFPINLGYDLLTNTINAKKRNNVLEITMHKLIDLTEHYKQCLMDLAKGIGGYEGVNKLELL 1305
            +I  + EAQNE+NNLV+I+LSLEA+  L YKH+ ANRDKLLKKL RAN   +KQ +KK+  ICKQAVELA+TVLKKIFSGKRVLLNHKYISKITECDS  QN RIL+QL++   I YHRLAIV+G PYNYHYSF+L+P ++EELKDAG W+   +   +   YNNRP+  S++ I      H +N ++NSN   S+++ S   +  E +V+  ET    ++V +K+ K    +N RK  T  E+K  KA   +     +       K L+EI+P +T+   + L+ K  RSFT    N+ ++ +++ +    +  ++ +Q +N    Y    L  EKRD  K  G  +Y  A  TEE+   H  +N    Y+ + E++ I  R DYTQ+RARIAGQFP NL Y LLT+    K R++VLEITMH+ + L++HYKQ L+  A G+GGY GV++LE +
Sbjct:   20 QIEQQQEAQNEDNNLVEINLSLEAKVLLAYKHQTANRDKLLKKLARANAKKSKQKYKKTFVICKQAVELADTVLKKIFSGKRVLLNHKYISKITECDSRKQNVRILEQLENLLGIDYHRLAIVDGTPYNYHYSFKLNPTVVEELKDAGAWEAETIGTFLSQPYNNRPHTSSRSKI-----DHRANPYSNSNAIPSNETSSPDTKKEECEVAQNET---KLVVRQKQTKPSRPNNKRKTRTQEEQKQRKASTVQATNVVQNGFLGGGKRLSEIQPYLTDELCERLRSKCGRSFT----NQAIRQITKAIAASKKGSKAVFQHVNGIVTYLTPALIKEKRDPNKIGGEGYYTLAGMTEEDKQLHKQEN----YLNQVENSGIHARCDYTQYRARIAGQFPTNLAYALLTSMTGVKSRDSVLEITMHRPVHLSQHYKQLLLKHATGVGGYAGVSELEFV 459
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20166.6067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2B4R183_STYPI2.620e-10346.71Uncharacterized protein n=1 Tax=Stylophora pistill... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20166contigL-elsbetiae_contig20166:1147..2466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue4.7e-07
Seed eggNOG ortholog336407.RBE_0414
Hectar predicted targeting categoryother localisation
EggNOG OGs1QN0G@1224,2AYA8@1,2V0EN@28211,31QCR@2,47G4D@766
Best tax levelRickettsiales
Best eggNOG OGNA|NA|NA
Exons1
Model size1320
Cds size1320
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815834.211109-CDS-L-elsbetiae_contig20166:1146..24661622815834.211109-CDS-L-elsbetiae_contig20166:1146..2466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20166 1147..2466 +
1691683133.8460205-CDS-L-elsbetiae_contig20166:1146..24661691683133.8460205-CDS-L-elsbetiae_contig20166:1146..2466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20166 1147..2466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20166.6067.1prot_L-elsbetiae_contig20166.6067.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20166 1147..2466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20166.6067.1

>prot_L-elsbetiae_contig20166.6067.1 ID=prot_L-elsbetiae_contig20166.6067.1|Name=mRNA_L-elsbetiae_contig20166.6067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=440bp
EISLELEAQNENNNLVQIDLSLEAQAYLRYKHKAANRDKLLKKLERANPH
TTKQIFKKSKFICKQAVELAETVLKKIFSGKRVLLNHKYISKITECDSTD
QNKRILDQLDDFFVIKYHRLAIVNGIPYNYHYSFELHPAIIEELKDAGLW
DLGFMPAEMRLSYNNRPNIFSKNIIRSDVHTHESNFFNNSNSSDSLSESV
ETTETKVSATETVEANVLVCKKKFKSNARKKTTSAERKASKAKVYKFKQY
DKPKTLAEIEPITEAESKILQDKSVRSFTVVFQNELLQDLSRKLHRTFES
RWQFLNYFAKVLHGEKRDEVKCAGLNFYIKARKTEEELAKHITQNQREFY
MKKEEDAAIFNRSDYTQFRARIAGQFPINLGYDLLTNTINAKKRNNVLEI
TMHKLIDLTEHYKQCLMDLAKGIGGYEGVNKLELLKRSE*
back to top

mRNA from alignment at L-elsbetiae_contig20166:1147..2466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20166.6067.1 ID=mRNA_L-elsbetiae_contig20166.6067.1|Name=mRNA_L-elsbetiae_contig20166.6067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig20166:1147..2466+ (Laminarionema elsbetiae ELsaHSoW15)
GAAATATCACTAGAGCTAGAAGCTCAAAACGAAAATAACAACCTAGTACA
AATAGATTTAAGTTTAGAAGCTCAAGCCTACCTGAGATATAAGCATAAAG
CAGCTAATAGAGATAAACTTCTCAAAAAACTTGAAAGAGCTAATCCTCAC
ACTACTAAGCAAATATTCAAAAAAAGTAAGTTTATTTGCAAACAAGCAGT
AGAACTTGCTGAAACTGTACTTAAAAAAATATTTAGTGGTAAGCGTGTAT
TATTAAACCACAAATATATTTCTAAAATTACCGAGTGTGATAGCACTGAT
CAGAATAAAAGAATTCTAGATCAACTAGATGATTTCTTTGTTATTAAATA
TCACAGATTAGCCATAGTAAATGGCATTCCATATAATTATCACTACTCCT
TTGAGTTACACCCTGCAATTATAGAGGAATTAAAGGATGCAGGACTTTGG
GATTTAGGATTCATGCCCGCAGAAATGCGCTTATCTTATAATAATAGACC
TAATATTTTTAGTAAAAATATAATTAGATCAGACGTGCATACGCACGAAT
CTAATTTTTTTAATAATTCTAATTCTAGTGATAGTTTATCAGAGTCTGTT
GAAACTACAGAAACCAAAGTATCGGCAACTGAAACTGTGGAAGCTAACGT
TTTGGTTTGCAAAAAGAAGTTTAAGTCTAATGCTAGAAAAAAAACTACGT
CTGCAGAGCGTAAGGCTAGTAAAGCTAAGGTTTATAAATTCAAGCAGTAC
GATAAACCTAAGACTTTAGCTGAAATAGAGCCTATAACAGAAGCAGAGAG
TAAAATATTACAGGATAAGTCGGTTAGAAGCTTTACTGTAGTCTTTCAAA
ACGAATTACTTCAAGATTTAAGTAGAAAGCTACATCGAACATTTGAATCC
AGATGGCAGTTTCTTAATTATTTTGCTAAAGTGCTGCATGGAGAGAAAAG
GGATGAAGTTAAGTGCGCAGGCCTAAATTTCTACATAAAAGCTCGTAAGA
CTGAAGAAGAATTAGCTAAGCATATTACTCAAAATCAGCGTGAGTTCTAT
ATGAAGAAGGAGGAGGATGCGGCTATTTTTAACAGGAGTGACTATACGCA
GTTTAGAGCAAGAATAGCGGGTCAATTCCCTATCAACCTTGGTTATGACT
TGCTCACAAACACGATAAATGCTAAAAAGAGGAATAATGTATTGGAAATA
ACCATGCATAAACTAATTGATCTTACAGAGCATTACAAGCAATGTTTGAT
GGATTTAGCTAAAGGGATTGGTGGTTATGAAGGTGTTAATAAATTAGAAT
TATTAAAAAGATCAGAATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig20166:1147..2466+

>mRNA_L-elsbetiae_contig20166.6067.1 ID=mRNA_L-elsbetiae_contig20166.6067.1|Name=mRNA_L-elsbetiae_contig20166.6067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2640bp|location=Sequence derived from alignment at L-elsbetiae_contig20166:1147..2466+ (Laminarionema elsbetiae ELsaHSoW15)
GAAATATCACTAGAGCTAGAAGCTCAAAACGAAAATAACAACCTAGTACA
AATAGATTTAAGTTTAGAAGCTCAAGCCTACCTGAGATATAAGCATAAAG
CAGCTAATAGAGATAAACTTCTCAAAAAACTTGAAAGAGCTAATCCTCAC
ACTACTAAGCAAATATTCAAAAAAAGTAAGTTTATTTGCAAACAAGCAGT
AGAACTTGCTGAAACTGTACTTAAAAAAATATTTAGTGGTAAGCGTGTAT
TATTAAACCACAAATATATTTCTAAAATTACCGAGTGTGATAGCACTGAT
CAGAATAAAAGAATTCTAGATCAACTAGATGATTTCTTTGTTATTAAATA
TCACAGATTAGCCATAGTAAATGGCATTCCATATAATTATCACTACTCCT
TTGAGTTACACCCTGCAATTATAGAGGAATTAAAGGATGCAGGACTTTGG
GATTTAGGATTCATGCCCGCAGAAATGCGCTTATCTTATAATAATAGACC
TAATATTTTTAGTAAAAATATAATTAGATCAGACGTGCATACGCACGAAT
CTAATTTTTTTAATAATTCTAATTCTAGTGATAGTTTATCAGAGTCTGTT
GAAACTACAGAAACCAAAGTATCGGCAACTGAAACTGTGGAAGCTAACGT
TTTGGTTTGCAAAAAGAAGTTTAAGTCTAATGCTAGAAAAAAAACTACGT
CTGCAGAGCGTAAGGCTAGTAAAGCTAAGGTTTATAAATTCAAGCAGTAC
GATAAACCTAAGACTTTAGCTGAAATAGAGCCTATAACAGAAGCAGAGAG
TAAAATATTACAGGATAAGTCGGTTAGAAGCTTTACTGTAGTCTTTCAAA
ACGAATTACTTCAAGATTTAAGTAGAAAGCTACATCGAACATTTGAATCC
AGATGGCAGTTTCTTAATTATTTTGCTAAAGTGCTGCATGGAGAGAAAAG
GGATGAAGTTAAGTGCGCAGGCCTAAATTTCTACATAAAAGCTCGTAAGA
CTGAAGAAGAATTAGCTAAGCATATTACTCAAAATCAGCGTGAGTTCTAT
ATGAAGAAGGAGGAGGATGCGGCTATTTTTAACAGGAGTGACTATACGCA
GTTTAGAGCAAGAATAGCGGGTCAATTCCCTATCAACCTTGGTTATGACT
TGCTCACAAACACGATAAATGCTAAAAAGAGGAATAATGTATTGGAAATA
ACCATGCATAAACTAATTGATCTTACAGAGCATTACAAGCAATGTTTGAT
GGATTTAGCTAAAGGGATTGGTGGTTATGAAGGTGTTAATAAATTAGAAT
TATTAAAAAGATCAGAATGAGAAATATCACTAGAGCTAGAAGCTCAAAAC
GAAAATAACAACCTAGTACAAATAGATTTAAGTTTAGAAGCTCAAGCCTA
CCTGAGATATAAGCATAAAGCAGCTAATAGAGATAAACTTCTCAAAAAAC
TTGAAAGAGCTAATCCTCACACTACTAAGCAAATATTCAAAAAAAGTAAG
TTTATTTGCAAACAAGCAGTAGAACTTGCTGAAACTGTACTTAAAAAAAT
ATTTAGTGGTAAGCGTGTATTATTAAACCACAAATATATTTCTAAAATTA
CCGAGTGTGATAGCACTGATCAGAATAAAAGAATTCTAGATCAACTAGAT
GATTTCTTTGTTATTAAATATCACAGATTAGCCATAGTAAATGGCATTCC
ATATAATTATCACTACTCCTTTGAGTTACACCCTGCAATTATAGAGGAAT
TAAAGGATGCAGGACTTTGGGATTTAGGATTCATGCCCGCAGAAATGCGC
TTATCTTATAATAATAGACCTAATATTTTTAGTAAAAATATAATTAGATC
AGACGTGCATACGCACGAATCTAATTTTTTTAATAATTCTAATTCTAGTG
ATAGTTTATCAGAGTCTGTTGAAACTACAGAAACCAAAGTATCGGCAACT
GAAACTGTGGAAGCTAACGTTTTGGTTTGCAAAAAGAAGTTTAAGTCTAA
TGCTAGAAAAAAAACTACGTCTGCAGAGCGTAAGGCTAGTAAAGCTAAGG
TTTATAAATTCAAGCAGTACGATAAACCTAAGACTTTAGCTGAAATAGAG
CCTATAACAGAAGCAGAGAGTAAAATATTACAGGATAAGTCGGTTAGAAG
CTTTACTGTAGTCTTTCAAAACGAATTACTTCAAGATTTAAGTAGAAAGC
TACATCGAACATTTGAATCCAGATGGCAGTTTCTTAATTATTTTGCTAAA
GTGCTGCATGGAGAGAAAAGGGATGAAGTTAAGTGCGCAGGCCTAAATTT
CTACATAAAAGCTCGTAAGACTGAAGAAGAATTAGCTAAGCATATTACTC
AAAATCAGCGTGAGTTCTATATGAAGAAGGAGGAGGATGCGGCTATTTTT
AACAGGAGTGACTATACGCAGTTTAGAGCAAGAATAGCGGGTCAATTCCC
TATCAACCTTGGTTATGACTTGCTCACAAACACGATAAATGCTAAAAAGA
GGAATAATGTATTGGAAATAACCATGCATAAACTAATTGATCTTACAGAG
CATTACAAGCAATGTTTGATGGATTTAGCTAAAGGGATTGGTGGTTATGA
AGGTGTTAATAAATTAGAATTATTAAAAAGATCAGAATGA
back to top