mRNA_L-elsbetiae_contig2016.6064.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2016.6064.1
Unique NamemRNA_L-elsbetiae_contig2016.6064.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2016.6064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2016contigL-elsbetiae_contig2016:7490..7946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size457
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2016.6064.1prot_L-elsbetiae_contig2016.6064.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2016 7519..7821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.8938596-UTR-L-elsbetiae_contig2016:7489..75181622815833.8938596-UTR-L-elsbetiae_contig2016:7489..7518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2016 7490..7518 +
1691683133.6303406-UTR-L-elsbetiae_contig2016:7489..75181691683133.6303406-UTR-L-elsbetiae_contig2016:7489..7518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2016 7490..7518 +
1622815833.9183605-UTR-L-elsbetiae_contig2016:7821..79461622815833.9183605-UTR-L-elsbetiae_contig2016:7821..7946Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2016 7822..7946 +
1691683133.6482341-UTR-L-elsbetiae_contig2016:7821..79461691683133.6482341-UTR-L-elsbetiae_contig2016:7821..7946Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2016 7822..7946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.9067721-CDS-L-elsbetiae_contig2016:7518..78211622815833.9067721-CDS-L-elsbetiae_contig2016:7518..7821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 7519..7821 +
1691683133.6396449-CDS-L-elsbetiae_contig2016:7518..78211691683133.6396449-CDS-L-elsbetiae_contig2016:7518..7821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2016 7519..7821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2016.6064.1

>prot_L-elsbetiae_contig2016.6064.1 ID=prot_L-elsbetiae_contig2016.6064.1|Name=mRNA_L-elsbetiae_contig2016.6064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MHIFTFLPPEGRCIFTIFCVLSFFECTNRSPSQNMKTFSFPLRIMRILVL
NKGSQKNRQKHIYASRAKPRHHHPYKEGRNTLKNTRFFSSFFLQRALSRR
*
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mRNA from alignment at L-elsbetiae_contig2016:7490..7946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2016.6064.1 ID=mRNA_L-elsbetiae_contig2016.6064.1|Name=mRNA_L-elsbetiae_contig2016.6064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=457bp|location=Sequence derived from alignment at L-elsbetiae_contig2016:7490..7946+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTGCGATTTGCAAGTTTTTAGCTCTATATGCATATTTTTACATTTTTA
CCGCCGGAAGGGAGATGCATTTTCACGATTTTTTGTGTCCTCAGCTTTTT
CGAGTGCACGAACCGCAGTCCGTCGCAGAACATGAAAACATTTTCCTTTC
CCCTCCGTATCATGCGCATTTTGGTTCTAAACAAAGGCTCACAGAAGAAT
CGACAGAAGCATATATACGCCTCGCGTGCTAAACCACGCCATCACCACCC
CTACAAGGAAGGAAGGAACACACTCAAAAACACGCGCTTTTTCTCCAGCT
TCTTTCTACAAAGAGCTCTGTCCCGCCGTTAAACGCACTTCATGTGATAG
GTATTAACAGAAAGGGTGGATGCGACAGGCATCAAATGTCATCGACAACT
GGTCTGTCTCAGCCGCCGTGCCGCTAGATACGGCCAAGTACGATGCACGA
TCCCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2016:7490..7946+

>mRNA_L-elsbetiae_contig2016.6064.1 ID=mRNA_L-elsbetiae_contig2016.6064.1|Name=mRNA_L-elsbetiae_contig2016.6064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig2016:7490..7946+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATATTTTTACATTTTTACCGCCGGAAGGGAGATGCATTTTCACGAT
TTTTTGTGTCCTCAGCTTTTTCGAGTGCACGAACCGCAGTCCGTCGCAGA
ACATGAAAACATTTTCCTTTCCCCTCCGTATCATGCGCATTTTGGTTCTA
AACAAAGGCTCACAGAAGAATCGACAGAAGCATATATACGCCTCGCGTGC
TAAACCACGCCATCACCACCCCTACAAGGAAGGAAGGAACACACTCAAAA
ACACGCGCTTTTTCTCCAGCTTCTTTCTACAAAGAGCTCTGTCCCGCCGT
TAAATGCATATTTTTACATTTTTACCGCCGGAAGGGAGATGCATTTTCAC
GATTTTTTGTGTCCTCAGCTTTTTCGAGTGCACGAACCGCAGTCCGTCGC
AGAACATGAAAACATTTTCCTTTCCCCTCCGTATCATGCGCATTTTGGTT
CTAAACAAAGGCTCACAGAAGAATCGACAGAAGCATATATACGCCTCGCG
TGCTAAACCACGCCATCACCACCCCTACAAGGAAGGAAGGAACACACTCA
AAAACACGCGCTTTTTCTCCAGCTTCTTTCTACAAAGAGCTCTGTCCCGC
CGTTAA
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