mRNA_L-elsbetiae_contig20153.6062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20153.6062.1
Unique NamemRNA_L-elsbetiae_contig20153.6062.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig20153.6062.1 vs. uniprot
Match: D7FVU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU9_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.730e-14
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:   76 YVDEHPGWVKIDHPEGYWMPVQQHGHDVMHEV 171
            YV EHPGWVKIDHPEGYWMPV+QHG  VMHEV
Sbjct:   49 YVTEHPGWVKIDHPEGYWMPVEQHGKAVMHEV 80
[Close]
BLAST of mRNA_L-elsbetiae_contig20153.6062.1 vs. uniprot
Match: A0A835ZIY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.280e-12
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   76 YVDEHPGWVKIDHPEGYWMPVQQHGHDVMHE 168
            YV EHPGWV+IDHP GYWMPV+Q GH V+HE
Sbjct:   49 YVQEHPGWVRIDHPNGYWMPVEQDGHTVLHE 79
[Close]
BLAST of mRNA_L-elsbetiae_contig20153.6062.1 vs. uniprot
Match: A0A8J4FZJ0_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FZJ0_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 6.820e-10
Identity = 20/27 (74.07%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   85 EHPGWVKIDHPEGYWMPVQQHGHDVMH 165
            EHPGWVK+DHP+GYW+P+QQ+G+DV H
Sbjct:   87 EHPGWVKVDHPKGYWLPIQQYGNDVCH 113
[Close]
BLAST of mRNA_L-elsbetiae_contig20153.6062.1 vs. uniprot
Match: A0A8J4G156_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G156_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 7.620e-10
Identity = 20/27 (74.07%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   85 EHPGWVKIDHPEGYWMPVQQHGHDVMH 165
            EHPGWVK+DHP+GYW+P+QQ+G+DV H
Sbjct:   92 EHPGWVKVDHPKGYWLPIQQYGNDVCH 118
[Close]
BLAST of mRNA_L-elsbetiae_contig20153.6062.1 vs. uniprot
Match: A0A250X2J7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X2J7_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 3.020e-9
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   91 PGWVKIDHPEGYWMPVQQHGHDVMHEVK 174
            PGWVKIDHP GYWMP+ Q+GHDV+H  K
Sbjct:   77 PGWVKIDHPNGYWMPISQNGHDVIHFKK 104
[Close]
BLAST of mRNA_L-elsbetiae_contig20153.6062.1 vs. uniprot
Match: A0A150GII6_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GII6_GONPE)

HSP 1 Score: 57.8 bits (138), Expect = 3.620e-9
Identity = 19/27 (70.37%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:   85 EHPGWVKIDHPEGYWMPVQQHGHDVMH 165
            EHPGWVK+DHP+ YW+P+QQ+G+DV H
Sbjct:   84 EHPGWVKVDHPQNYWLPIQQYGNDVCH 110
[Close]
BLAST of mRNA_L-elsbetiae_contig20153.6062.1 vs. uniprot
Match: A0A7S0S545_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S545_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 1.220e-8
Identity = 18/26 (69.23%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   88 HPGWVKIDHPEGYWMPVQQHGHDVMH 165
            HPGWVK+DHP+GYW+P++QHG  V+H
Sbjct:   94 HPGWVKVDHPQGYWLPIEQHGKPVVH 119
[Close]
BLAST of mRNA_L-elsbetiae_contig20153.6062.1 vs. uniprot
Match: A0A835TBT2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TBT2_CHLIN)

HSP 1 Score: 55.5 bits (132), Expect = 1.690e-8
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:   85 EHPGWVKIDHPEGYWMPVQQHGHDVMH 165
            EHPGWVK+DH +GYWMP++QHG  V H
Sbjct:   58 EHPGWVKVDHEKGYWMPIEQHGKPVCH 84
[Close]
BLAST of mRNA_L-elsbetiae_contig20153.6062.1 vs. uniprot
Match: A8J4I5_CHLRE (Predicted protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J4I5_CHLRE)

HSP 1 Score: 55.5 bits (132), Expect = 2.900e-8
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:   85 EHPGWVKIDHPEGYWMPVQQHGHDVMH 165
            EHPGWVK+DH +GYWMP++QHG  V H
Sbjct:   82 EHPGWVKVDHEKGYWMPIEQHGKPVCH 108
[Close]
BLAST of mRNA_L-elsbetiae_contig20153.6062.1 vs. uniprot
Match: A0A835XUH0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XUH0_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 3.230e-8
Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:   85 EHPGWVKIDHPEGYWMPVQQHGHDVMH 165
            EHPGWVK+DHP+ YW+P++QHG  V H
Sbjct:   58 EHPGWVKVDHPKDYWLPIEQHGKPVCH 84
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20153.6062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FVU9_ECTSI1.730e-1487.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZIY5_9STRA2.280e-1277.42Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A8J4FZJ0_9CHLO6.820e-1074.07Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4G156_9CHLO7.620e-1074.07Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A250X2J7_9CHLO3.020e-975.00Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A150GII6_GONPE3.620e-970.37Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A7S0S545_9CHLO1.220e-869.23Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A835TBT2_CHLIN1.690e-870.37Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A8J4I5_CHLRE2.900e-870.37Predicted protein n=3 Tax=Chlamydomonas TaxID=3052... [more]
A0A835XUH0_9CHLO3.230e-866.67Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20153contigL-elsbetiae_contig20153:1240..1872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D7FVU9
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2C7IW@1,2SCDY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002230.1
Exons2
Model size201
Cds size177
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20153.6062.1prot_L-elsbetiae_contig20153.6062.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20153 1240..1848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.8040402-CDS-L-elsbetiae_contig20153:1239..13111622815833.8040402-CDS-L-elsbetiae_contig20153:1239..1311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20153 1240..1311 +
1691683133.5831254-CDS-L-elsbetiae_contig20153:1239..13111691683133.5831254-CDS-L-elsbetiae_contig20153:1239..1311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20153 1240..1311 +
1622815833.817133-CDS-L-elsbetiae_contig20153:1743..18481622815833.817133-CDS-L-elsbetiae_contig20153:1743..1848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20153 1744..1848 +
1691683133.6004832-CDS-L-elsbetiae_contig20153:1743..18481691683133.6004832-CDS-L-elsbetiae_contig20153:1743..1848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20153 1744..1848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.8269176-UTR-L-elsbetiae_contig20153:1848..18721622815833.8269176-UTR-L-elsbetiae_contig20153:1848..1872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20153 1849..1872 +
1691683133.6102781-UTR-L-elsbetiae_contig20153:1848..18721691683133.6102781-UTR-L-elsbetiae_contig20153:1848..1872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20153 1849..1872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20153.6062.1

>prot_L-elsbetiae_contig20153.6062.1 ID=prot_L-elsbetiae_contig20153.6062.1|Name=mRNA_L-elsbetiae_contig20153.6062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
NEAGDERFYVQFRLASQRNHAQGLVYVDEHPGWVKIDHPEGYWMPVQQHG
HDVMHEVK*
back to top

mRNA from alignment at L-elsbetiae_contig20153:1240..1872+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20153.6062.1 ID=mRNA_L-elsbetiae_contig20153.6062.1|Name=mRNA_L-elsbetiae_contig20153.6062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=633bp|location=Sequence derived from alignment at L-elsbetiae_contig20153:1240..1872+ (Laminarionema elsbetiae ELsaHSoW15)
AACGAAGCTGGAGATGAGCGCTTCTACGTCCAGTTCCGATTGGCCTCGCA
ACGGAACCATGCTCAAGGGCTGGTAAGTGTTGTGCAGTGTTTCATTTGTA
TGTCATTGTTGACGAGGATGGGGAGTGCTGGACCCTGCTCGCGATAAAAA
TATCACTGGCAGGCACCGCAGGAGGGGGTCCACCCCCTCCTATGTGACCC
CGGTTGGGTCGTCTAGCTAGTCGGACTGGAGGAAGGGGGCCAGTGGGGCG
GACGACGAATAAGCCAAAAATGGGAGAAAAATAATGTAGCTTTGTTGTGC
TTCTTTTCATCTAAACTATGTTTCTCCGATCCCTTCAAATGAGGTTTGAA
GCGCCGTATGTATGTACGGAGGAAGATTTGCCGATGTTATTATAATAAAT
GTTTGCCGAGCAATTCACACAGGCGGCGGCAAAGTGATAGATAACTCGTC
ACCCCCTTACATTTTTTTCCGCTGTTTTTTTTTATTGTATTGATATTTTG
ACAGGTATACGTCGACGAGCACCCTGGGTGGGTGAAGATCGACCACCCGG
AGGGATACTGGATGCCAGTCCAGCAGCACGGACATGACGTCATGCACGAA
GTCAAGTAGTCGTAGCCCAGAACGCCTTGTTTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig20153:1240..1872+

>mRNA_L-elsbetiae_contig20153.6062.1 ID=mRNA_L-elsbetiae_contig20153.6062.1|Name=mRNA_L-elsbetiae_contig20153.6062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig20153:1240..1872+ (Laminarionema elsbetiae ELsaHSoW15)
AACGAAGCTGGAGATGAGCGCTTCTACGTCCAGTTCCGATTGGCCTCGCA
ACGGAACCATGCTCAAGGGCTGAACGAAGCTGGAGATGAGCGCTTCTACG
TCCAGTTCCGATTGGCCTCGCAACGGAACCATGCTCAAGGGCTGGTATAC
GTCGACGAGCACCCTGGGTGGGTGAAGATCGACCACCCGGAGGGATACTG
GATGCCAGTCCAGCAGCACGGACATGACGTCATGCACGAAGTCAAGTAGG
TATACGTCGACGAGCACCCTGGGTGGGTGAAGATCGACCACCCGGAGGGA
TACTGGATGCCAGTCCAGCAGCACGGACATGACGTCATGCACGAAGTCAA
GTAG
back to top