mRNA_L-elsbetiae_contig2015.6061.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2015.6061.1
Unique NamemRNA_L-elsbetiae_contig2015.6061.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2015.6061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2015contigL-elsbetiae_contig2015:6134..6902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size769
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2015.6061.1prot_L-elsbetiae_contig2015.6061.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2015 6201..6818 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.6625695-UTR-L-elsbetiae_contig2015:6133..62001622815833.6625695-UTR-L-elsbetiae_contig2015:6133..6200Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2015 6134..6200 +
1691683133.5104034-UTR-L-elsbetiae_contig2015:6133..62001691683133.5104034-UTR-L-elsbetiae_contig2015:6133..6200Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2015 6134..6200 +
1622815833.6874707-UTR-L-elsbetiae_contig2015:6818..69021622815833.6874707-UTR-L-elsbetiae_contig2015:6818..6902Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2015 6819..6902 +
1691683133.5270061-UTR-L-elsbetiae_contig2015:6818..69021691683133.5270061-UTR-L-elsbetiae_contig2015:6818..6902Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2015 6819..6902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.6766465-CDS-L-elsbetiae_contig2015:6200..68181622815833.6766465-CDS-L-elsbetiae_contig2015:6200..6818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2015 6201..6818 +
1691683133.5190387-CDS-L-elsbetiae_contig2015:6200..68181691683133.5190387-CDS-L-elsbetiae_contig2015:6200..6818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2015 6201..6818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2015.6061.1

>prot_L-elsbetiae_contig2015.6061.1 ID=prot_L-elsbetiae_contig2015.6061.1|Name=mRNA_L-elsbetiae_contig2015.6061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
MHLARIFLESCCVQGFCNRPPATARTYHEHTQIHNHTRRACVRLARIPVR
GEMQRGRKLHRSKKKFGGVFPACPLGENANDFYEHFGSLQALTGSYLLLS
PLQHITAAKVIVVAVVIVAGRPISCLTPRTAFRRIYARVSPQKHSSFVQV
WAQVWWRKPDGCNGYFLEEKYSSASCQQRFHTSSTACSSYNTKKQQPKTH
RSAQL*
back to top

mRNA from alignment at L-elsbetiae_contig2015:6134..6902+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2015.6061.1 ID=mRNA_L-elsbetiae_contig2015.6061.1|Name=mRNA_L-elsbetiae_contig2015.6061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=769bp|location=Sequence derived from alignment at L-elsbetiae_contig2015:6134..6902+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCTTTGGGCGTCTTCGTGACAAGCGTGGATCTTTCCATTGCAAACTAT
TAACAGAACACTTGTACATGCACCTTGCCAGGATCTTTCTCGAATCTTGC
TGTGTTCAAGGGTTTTGTAACCGACCTCCCGCGACCGCGCGCACTTACCA
CGAGCACACACAAATACACAACCACACGCGGCGCGCTTGCGTTAGGCTTG
CTCGCATCCCCGTGCGCGGCGAGATGCAACGCGGTCGAAAACTTCATCGT
TCGAAAAAAAAGTTTGGGGGGGTATTCCCGGCGTGTCCCCTGGGGGAAAA
CGCCAACGATTTTTACGAGCATTTTGGGTCTCTACAGGCCCTCACTGGCT
CCTATTTACTACTGTCGCCTCTGCAACATATAACAGCCGCAAAAGTGATT
GTTGTCGCAGTTGTGATCGTTGCTGGGCGTCCTATATCTTGTCTTACTCC
GAGAACTGCTTTTCGTCGAATATATGCGCGTGTGAGCCCACAAAAACATA
GCTCCTTCGTCCAAGTTTGGGCGCAAGTTTGGTGGCGGAAACCAGACGGG
TGCAATGGCTACTTCTTGGAAGAGAAATACTCCTCCGCTTCATGCCAGCA
ACGGTTTCATACCTCTAGTACCGCTTGCTCGTCCTACAACACAAAAAAAC
AACAGCCAAAAACGCATCGAAGCGCACAACTATAATCTTCACGGACCAAG
TACAGAACGTGAAAATCCGCGCCAGATTTCCACGTTGTACATGTTTATGG
CTTATTGCTTAATCCCGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2015:6134..6902+

>mRNA_L-elsbetiae_contig2015.6061.1 ID=mRNA_L-elsbetiae_contig2015.6061.1|Name=mRNA_L-elsbetiae_contig2015.6061.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig2015:6134..6902+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCTTGCCAGGATCTTTCTCGAATCTTGCTGTGTTCAAGGGTTTTG
TAACCGACCTCCCGCGACCGCGCGCACTTACCACGAGCACACACAAATAC
ACAACCACACGCGGCGCGCTTGCGTTAGGCTTGCTCGCATCCCCGTGCGC
GGCGAGATGCAACGCGGTCGAAAACTTCATCGTTCGAAAAAAAAGTTTGG
GGGGGTATTCCCGGCGTGTCCCCTGGGGGAAAACGCCAACGATTTTTACG
AGCATTTTGGGTCTCTACAGGCCCTCACTGGCTCCTATTTACTACTGTCG
CCTCTGCAACATATAACAGCCGCAAAAGTGATTGTTGTCGCAGTTGTGAT
CGTTGCTGGGCGTCCTATATCTTGTCTTACTCCGAGAACTGCTTTTCGTC
GAATATATGCGCGTGTGAGCCCACAAAAACATAGCTCCTTCGTCCAAGTT
TGGGCGCAAGTTTGGTGGCGGAAACCAGACGGGTGCAATGGCTACTTCTT
GGAAGAGAAATACTCCTCCGCTTCATGCCAGCAACGGTTTCATACCTCTA
GTACCGCTTGCTCGTCCTACAACACAAAAAAACAACAGCCAAAAACGCAT
CGAAGCGCACAACTATAAATGCACCTTGCCAGGATCTTTCTCGAATCTTG
CTGTGTTCAAGGGTTTTGTAACCGACCTCCCGCGACCGCGCGCACTTACC
ACGAGCACACACAAATACACAACCACACGCGGCGCGCTTGCGTTAGGCTT
GCTCGCATCCCCGTGCGCGGCGAGATGCAACGCGGTCGAAAACTTCATCG
TTCGAAAAAAAAGTTTGGGGGGGTATTCCCGGCGTGTCCCCTGGGGGAAA
ACGCCAACGATTTTTACGAGCATTTTGGGTCTCTACAGGCCCTCACTGGC
TCCTATTTACTACTGTCGCCTCTGCAACATATAACAGCCGCAAAAGTGAT
TGTTGTCGCAGTTGTGATCGTTGCTGGGCGTCCTATATCTTGTCTTACTC
CGAGAACTGCTTTTCGTCGAATATATGCGCGTGTGAGCCCACAAAAACAT
AGCTCCTTCGTCCAAGTTTGGGCGCAAGTTTGGTGGCGGAAACCAGACGG
GTGCAATGGCTACTTCTTGGAAGAGAAATACTCCTCCGCTTCATGCCAGC
AACGGTTTCATACCTCTAGTACCGCTTGCTCGTCCTACAACACAAAAAAA
CAACAGCCAAAAACGCATCGAAGCGCACAACTATAA
back to top