mRNA_L-elsbetiae_contig2014.6057.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2014.6057.1
Unique NamemRNA_L-elsbetiae_contig2014.6057.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2014.6057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2014contigL-elsbetiae_contig2014:5400..6796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size384
Cds size288
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2014.6057.1prot_L-elsbetiae_contig2014.6057.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2014 5494..6796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.4511197-UTR-L-elsbetiae_contig2014:5399..54931622815833.4511197-UTR-L-elsbetiae_contig2014:5399..5493Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2014 5400..5493 -
1691683133.370035-UTR-L-elsbetiae_contig2014:5399..54931691683133.370035-UTR-L-elsbetiae_contig2014:5399..5493Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2014 5400..5493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.4620428-CDS-L-elsbetiae_contig2014:5493..57581622815833.4620428-CDS-L-elsbetiae_contig2014:5493..5758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 5494..5758 -
1691683133.3815267-CDS-L-elsbetiae_contig2014:5493..57581691683133.3815267-CDS-L-elsbetiae_contig2014:5493..5758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 5494..5758 -
1622815833.471357-CDS-L-elsbetiae_contig2014:6773..67961622815833.471357-CDS-L-elsbetiae_contig2014:6773..6796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 6774..6796 -
1691683133.3952525-CDS-L-elsbetiae_contig2014:6773..67961691683133.3952525-CDS-L-elsbetiae_contig2014:6773..6796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2014 6774..6796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2014.6057.1

>prot_L-elsbetiae_contig2014.6057.1 ID=prot_L-elsbetiae_contig2014.6057.1|Name=mRNA_L-elsbetiae_contig2014.6057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
CRSWGSERVRKKTGILSILRYSSGPCRRHEAQAVRAAGLSATAVPAQRTD
SPDLHLLRLLPPNTLAARCSPFLGSAMNDVLRMAGVGVVGDGRRR*
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mRNA from alignment at L-elsbetiae_contig2014:5400..6796-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2014.6057.1 ID=mRNA_L-elsbetiae_contig2014.6057.1|Name=mRNA_L-elsbetiae_contig2014.6057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1397bp|location=Sequence derived from alignment at L-elsbetiae_contig2014:5400..6796- (Laminarionema elsbetiae ELsaHSoW15)
TGCCGGAGCTGGGGCTCTGAGAGGTATGACAGCAGTAGATAGTCAAGGCT
TTTGGCTTGAAATCAATCATTTTTCGACACCCGAAGGCTGCGCCTCTCTC
CCGTACTCGGGAACAAGTGAGCTAACTAGCTTGGCTGCAAGGATCGTATT
TCCACGTAGCCTTTAAGCTAAGACACGTCGTGACCGACTGGGCAACGATG
CAACAAAGAGTTAATTAAACACGTTAGCTTGATAGCACGTTAGATGACGC
ACGGCTGTTGGTGTTTTCTGCGGCGGAGCCTCATCTTGTCTGTTGGACAC
ACACACACACACACACACACCCGTTTGAGTGTAAACGTTTGCACCGCAGA
GAGAGCCTACCCTTGCGCATGCCAGGCCCGTAATACCAGAAAAAGGTGCC
CCTGAAGGTTTTGTTGACCCCTGCGGAAGCTAGAGCTGTCAAATGTTTGA
CAGCAATAGAGCGGCACGATCATATTGACACTCTTGTTGGTTTGAAAACA
GTTGGGGGAACAGGGGAAGGAAGGTTTGGGGGAGATATCTGCACCGTCGT
TTGAGTTAGTGTCCATCACTTGGACTTGTTCTTGGTAAGTGATCGCGCCT
TCTTCCAAGGTACCTAGCATTAGAGTCGTGAGACGCGTGTTTAGATATTC
CATCCACCTCTTTTCGCTCCCGTCAGTAGTCTTGGTACCGCTGCACCACC
CTTCGCGTCCGGAGCGCTGGGGTTGTGAATTATTTTTTGTGCGACAGCAA
CGTCTTTTTTTGTGCCATGGGCTGCCCAAAAAGGCCCCGAGTTAGTTCAG
CATCGTGTGTAAAACACCATTATTGATTTGTCCCAAACAGTTTTTTCTCC
ACACCAATAACTCTGTACATGCATAACCACAACCATTCAACAGCAGGGAG
TGGCACCCTATGCAGTGAGGAACCGAAGATCAGAGCACGACATCCAAGCC
AGTTTCAACTCAACTCTGCCAACGCTCTCCCAATAACTCTCATCCCCCCG
TCTCCCGCCCCCCCCCCCACCCTCTCGACCGCTATTAGAGTCCGAAAAAA
GACAGGAATTCTGTCAATCTTGCGTTACTCGTCAGGGCCATGCCGGCGGC
ATGAGGCACAAGCCGTGCGGGCGGCGGGACTGTCAGCAACCGCCGTGCCC
GCTCAGCGCACCGATAGCCCAGACCTTCACCTCCTCCGGCTTCTTCCCCC
CAATACGCTTGCGGCGCGATGCTCGCCTTTCCTCGGGAGCGCCATGAATG
ACGTCCTACGCATGGCGGGCGTTGGCGTCGTCGGCGACGGTCGGAGGCGC
TGATAGCACGGGGGATAAAACGGGGGAGTCAGGAATTAGACGGCGGTGCG
GAATTGCTGTCAGCGACGTGCCTGGAGAGTGAGAGGAAGAAGGGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2014:5400..6796-

>mRNA_L-elsbetiae_contig2014.6057.1 ID=mRNA_L-elsbetiae_contig2014.6057.1|Name=mRNA_L-elsbetiae_contig2014.6057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig2014:5400..6796- (Laminarionema elsbetiae ELsaHSoW15)
TGCCGGAGCTGGGGCTCTGAGAGTGCCGGAGCTGGGGCTCTGAGAGAGTC
CGAAAAAAGACAGGAATTCTGTCAATCTTGCGTTACTCGTCAGGGCCATG
CCGGCGGCATGAGGCACAAGCCGTGCGGGCGGCGGGACTGTCAGCAACCG
CCGTGCCCGCTCAGCGCACCGATAGCCCAGACCTTCACCTCCTCCGGCTT
CTTCCCCCCAATACGCTTGCGGCGCGATGCTCGCCTTTCCTCGGGAGCGC
CATGAATGACGTCCTACGCATGGCGGGCGTTGGCGTCGTCGGCGACGGTC
GGAGGCGCTGAAGTCCGAAAAAAGACAGGAATTCTGTCAATCTTGCGTTA
CTCGTCAGGGCCATGCCGGCGGCATGAGGCACAAGCCGTGCGGGCGGCGG
GACTGTCAGCAACCGCCGTGCCCGCTCAGCGCACCGATAGCCCAGACCTT
CACCTCCTCCGGCTTCTTCCCCCCAATACGCTTGCGGCGCGATGCTCGCC
TTTCCTCGGGAGCGCCATGAATGACGTCCTACGCATGGCGGGCGTTGGCG
TCGTCGGCGACGGTCGGAGGCGCTGA
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