mRNA_L-elsbetiae_contig2013.6056.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2013.6056.1
Unique NamemRNA_L-elsbetiae_contig2013.6056.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2013.6056.1 vs. uniprot
Match: A0A6H5KYP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.480e-29
Identity = 62/81 (76.54%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 AEEGLERSNGRAEEAYGKLILLARGYKTLEEESRCKAVEAARLLVEAETRAKLLEEKGREEERRHLLTKAAVRDGEASLQR 243
            AEEGL+ SNGR EE YGKLILLARGYK+LEE+SRC+AVE  RLLVE+E++ KLL+E+ REEERRH LTKAAV+DGEASL+R
Sbjct:   96 AEEGLKLSNGRIEEVYGKLILLARGYKSLEEDSRCQAVEGERLLVESESKTKLLQEQAREEERRHRLTKAAVKDGEASLRR 176
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BLAST of mRNA_L-elsbetiae_contig2013.6056.1 vs. uniprot
Match: D8LJ54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ54_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.250e-27
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 AEEGLERSNGRAEEAYGKLILLARGYKTLEEESRCKAVEAARLLVEAETRAKLLEEKGREEERRHLLTKAAVRDGEASLQR 243
            AEEGLE SNGR EE YGKLILLARGYK LEE+SRC+AVE  RLLVE+E++ KLL+E+ REEERRH LTKAA +DGEASL+R
Sbjct:  718 AEEGLELSNGRVEEVYGKLILLARGYKGLEEDSRCQAVEGERLLVESESKTKLLQEQAREEERRHRLTKAAAKDGEASLRR 798
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2013.6056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYP7_9PHAE3.480e-2976.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ54_ECTSI1.250e-2776.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2013contigL-elsbetiae_contig2013:333..1833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size245
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2013.6056.1prot_L-elsbetiae_contig2013.6056.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2013 334..1833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.3936956-CDS-L-elsbetiae_contig2013:333..4051622815833.3936956-CDS-L-elsbetiae_contig2013:333..405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2013 334..405 -
1691683133.3304882-CDS-L-elsbetiae_contig2013:333..4051691683133.3304882-CDS-L-elsbetiae_contig2013:333..405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2013 334..405 -
1622815833.4087741-CDS-L-elsbetiae_contig2013:1001..11181622815833.4087741-CDS-L-elsbetiae_contig2013:1001..1118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2013 1002..1118 -
1691683133.3448727-CDS-L-elsbetiae_contig2013:1001..11181691683133.3448727-CDS-L-elsbetiae_contig2013:1001..1118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2013 1002..1118 -
1622815833.4195893-CDS-L-elsbetiae_contig2013:1779..18331622815833.4195893-CDS-L-elsbetiae_contig2013:1779..1833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2013 1780..1833 -
1691683133.3590229-CDS-L-elsbetiae_contig2013:1779..18331691683133.3590229-CDS-L-elsbetiae_contig2013:1779..1833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2013 1780..1833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2013.6056.1

>prot_L-elsbetiae_contig2013.6056.1 ID=prot_L-elsbetiae_contig2013.6056.1|Name=mRNA_L-elsbetiae_contig2013.6056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
AEEGLERSNGRAEEAYGKLILLARGYKTLEEESRCKAVEAARLLVEAETR
AKLLEEKGREEERRHLLTKAAVRDGEASLQR
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mRNA from alignment at L-elsbetiae_contig2013:333..1833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2013.6056.1 ID=mRNA_L-elsbetiae_contig2013.6056.1|Name=mRNA_L-elsbetiae_contig2013.6056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1501bp|location=Sequence derived from alignment at L-elsbetiae_contig2013:333..1833- (Laminarionema elsbetiae ELsaHSoW15)
GCGGAGGAGGGGCTGGAGCGATCCAACGGGAGAGCGGAGGAGGCGTACGG
AAAGGTGGGCCGATCAATGCCTGTTGTTGGCGCCGTCGTTGTTTTTTGCT
GCTGCTGCTGTTATGCTGCTGCTGCTGCTGTTATGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGTTATGCTGTTACATACTCCTTCAGTAAGTAGT
CGGTGGTTGTGTTGGGCGCGATTGGTTGTTCCCTTCTTTATCCTCCGGGA
GGGCGTGGAGCGAACGTTACGGGCAAGGAAAGACGGGTCGGGGGGGGGGG
GGGTTTGGGGCCGGTAGTGAGCCGGCGGGGTGTGTTGTTATTTTGGACTG
GTGGGGCGCTCGCTCGCTCGCTCGCTGGTGGGACGATCGATGGCGATGAC
GGTGAAGTTTTATTTTATTTTATTGTTGTCTCTAATTTCAGTCGTAGACC
TTTGGGAGGGTGGGTACACACAGGAGTGGCGTTGTAATCGAGTGGTCTGT
TTCTATCCTCGGCACTTGTATAGCGATATCTCCCCTGTTCCTAATAACAG
GCTCAACCAAGTTTTTAAATTATTTTTTATCGCAACGTTTGTGCTTTGTA
GGCTTTATATTTAGCGATGACGGTGGTGCAACTCCTCCGCCGACGGTCAA
AATCACTCACCCCGCAATCCCATCGCGATTGTACCAACCGCGGTGCCCCC
TGACGATTTCCGCAGCTGATATTGCTGGCCAGGGGCTACAAGACCCTGGA
GGAAGAGTCACGCTGCAAGGCCGTGGAAGCGGCACGCCTGCTGGTGGAAG
CAGAAACGCGGGCCAAGCTTCTTGAAGAGAAGGTATTTGTCACAAGCGGG
GGGCTAGGTGTGCGTACATTTTATTTTATTTTATTTTTATTTTCGTCAAC
CAATGTGTGTGTTGGTTGTGCGCCTGCGTGCACGTGCAAGCTGTCGCTGC
CTCAACGTGTGCGGTCAAACCAACCAATCTGTCGCTGTCGCGGTTCGCCG
GCTGAAAACATCGATGACACGGGGATCCTGCTTGTATGTACTTGTGGAGC
GGTCCTGAATTCGGTCGTATTTTTTAGCTCCTGAGTGACACTCCTCCGGG
TACATCATTATTCATGGCGATGGGGAAAATATTCTTGCCTGTGTCCGTGT
GCCGTTGTTGTTTCTCACATTAGCTCTCTAGTGCAAAACATCCTTGGGGG
CCCGTGGTCACAAAACAAGGCACACTCGACGTCGCGGAAGAAAACATGAA
ACAAAAAAATATGGTACATGGGCGCCCCCGGCGGTACTAAACTGGACCCG
GAGGGGTCTTGCGTCTCGCCAACACAAAATGAAAGGTAGAGTGCACACTA
CTCGGAAGATAAAATTAAATAAAATCCGTGTGCGTGTGCGTGTGTTTGTG
CGTGCGCGGTGTTTCTGCGTGCTTCCAGGGGAGGGAGGAGGAGAGGCGAC
ATCTCTTGACCAAGGCGGCGGTGAGGGACGGCGAGGCCTCACTTCAGCGG
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2013:333..1833-

>mRNA_L-elsbetiae_contig2013.6056.1 ID=mRNA_L-elsbetiae_contig2013.6056.1|Name=mRNA_L-elsbetiae_contig2013.6056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig2013:333..1833- (Laminarionema elsbetiae ELsaHSoW15)
GCGGAGGAGGGGCTGGAGCGATCCAACGGGAGAGCGGAGGAGGCGTACGG
AAAGGCGGAGGAGGGGCTGGAGCGATCCAACGGGAGAGCGGAGGAGGCGT
ACGGAAAGCTGATATTGCTGGCCAGGGGCTACAAGACCCTGGAGGAAGAG
TCACGCTGCAAGGCCGTGGAAGCGGCACGCCTGCTGGTGGAAGCAGAAAC
GCGGGCCAAGCTTCTTGAAGAGAAGCTGATATTGCTGGCCAGGGGCTACA
AGACCCTGGAGGAAGAGTCACGCTGCAAGGCCGTGGAAGCGGCACGCCTG
CTGGTGGAAGCAGAAACGCGGGCCAAGCTTCTTGAAGAGAAGGGGAGGGA
GGAGGAGAGGCGACATCTCTTGACCAAGGCGGCGGTGAGGGACGGCGAGG
CCTCACTTCAGCGGGGGAGGGAGGAGGAGAGGCGACATCTCTTGACCAAG
GCGGCGGTGAGGGACGGCGAGGCCTCACTTCAGCGG
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