mRNA_L-elsbetiae_contig20124.6055.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20124.6055.1
Unique NamemRNA_L-elsbetiae_contig20124.6055.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20124.6055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20124contigL-elsbetiae_contig20124:1248..1703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size457
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.3552744-CDS-L-elsbetiae_contig20124:1247..17031622815833.3552744-CDS-L-elsbetiae_contig20124:1247..1703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20124 1248..1703 +
1691683133.3199384-CDS-L-elsbetiae_contig20124:1247..17031691683133.3199384-CDS-L-elsbetiae_contig20124:1247..1703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20124 1248..1703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20124.6055.1prot_L-elsbetiae_contig20124.6055.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20124 1248..1703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20124.6055.1

>prot_L-elsbetiae_contig20124.6055.1 ID=prot_L-elsbetiae_contig20124.6055.1|Name=mRNA_L-elsbetiae_contig20124.6055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
VPPVSDARFSPNPAAGEVSVPPSVDRFRNPAADRGVAARPPAAVRSQTFA
AAGASMTPALGVGASVTGSTSEAAGATVLAAAPSQVTAPAVDPDAASSDV
APPASALGTFTVHNPGASAQDIEHPAPSTAAMRALAPAGIEYHYRGSDIE
FL
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mRNA from alignment at L-elsbetiae_contig20124:1248..1703+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20124.6055.1 ID=mRNA_L-elsbetiae_contig20124.6055.1|Name=mRNA_L-elsbetiae_contig20124.6055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig20124:1248..1703+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCGCCTGTCTCCGATGCTCGTTTTTCCCCGAACCCTGCCGCCGGTGA
GGTCTCAGTGCCTCCCTCCGTTGACAGGTTCCGCAATCCCGCTGCTGACC
GTGGGGTTGCCGCGCGGCCGCCTGCTGCGGTTCGTTCACAGACCTTTGCC
GCTGCTGGTGCCAGCATGACCCCTGCGCTTGGCGTGGGTGCATCTGTGAC
TGGCAGTACCAGTGAGGCTGCTGGAGCAACCGTTCTTGCTGCCGCTCCTT
CTCAGGTCACCGCCCCCGCCGTGGACCCGGACGCTGCTTCATCCGACGTC
GCACCGCCGGCCTCGGCGCTGGGTACCTTCACGGTGCACAACCCAGGTGC
CAGTGCTCAAGACATTGAGCACCCGGCGCCGAGTACGGCAGCCATGCGTG
CTCTGGCCCCGGCAGGTATCGAGTACCACTATCGGGGTAGTGACATCGAA
TTTCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20124:1248..1703+

>mRNA_L-elsbetiae_contig20124.6055.1 ID=mRNA_L-elsbetiae_contig20124.6055.1|Name=mRNA_L-elsbetiae_contig20124.6055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig20124:1248..1703+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCGCCTGTCTCCGATGCTCGTTTTTCCCCGAACCCTGCCGCCGGTGA
GGTCTCAGTGCCTCCCTCCGTTGACAGGTTCCGCAATCCCGCTGCTGACC
GTGGGGTTGCCGCGCGGCCGCCTGCTGCGGTTCGTTCACAGACCTTTGCC
GCTGCTGGTGCCAGCATGACCCCTGCGCTTGGCGTGGGTGCATCTGTGAC
TGGCAGTACCAGTGAGGCTGCTGGAGCAACCGTTCTTGCTGCCGCTCCTT
CTCAGGTCACCGCCCCCGCCGTGGACCCGGACGCTGCTTCATCCGACGTC
GCACCGCCGGCCTCGGCGCTGGGTACCTTCACGGTGCACAACCCAGGTGC
CAGTGCTCAAGACATTGAGCACCCGGCGCCGAGTACGGCAGCCATGCGTG
CTCTGGCCCCGGCAGGTATCGAGTACCACTATCGGGGTAGTGACATCGAA
TTTCTTGTTCCGCCTGTCTCCGATGCTCGTTTTTCCCCGAACCCTGCCGC
CGGTGAGGTCTCAGTGCCTCCCTCCGTTGACAGGTTCCGCAATCCCGCTG
CTGACCGTGGGGTTGCCGCGCGGCCGCCTGCTGCGGTTCGTTCACAGACC
TTTGCCGCTGCTGGTGCCAGCATGACCCCTGCGCTTGGCGTGGGTGCATC
TGTGACTGGCAGTACCAGTGAGGCTGCTGGAGCAACCGTTCTTGCTGCCG
CTCCTTCTCAGGTCACCGCCCCCGCCGTGGACCCGGACGCTGCTTCATCC
GACGTCGCACCGCCGGCCTCGGCGCTGGGTACCTTCACGGTGCACAACCC
AGGTGCCAGTGCTCAAGACATTGAGCACCCGGCGCCGAGTACGGCAGCCA
TGCGTGCTCTGGCCCCGGCAGGTATCGAGTACCACTATCGGGGTAGTGAC
ATCGAATTTCTT
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