mRNA_L-elsbetiae_contig2010.6041.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2010.6041.1
Unique NamemRNA_L-elsbetiae_contig2010.6041.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2010.6041.1 vs. uniprot
Match: D7FT00_ECTSI (Avl9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT00_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.340e-20
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 1 
Query:    1 EWRIRFANGDDYAGTVMDGAPHGTGTYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRDHISYQGKGALTLADGTTHDFA 258
            EWRIRFANGD +AGTV++G PHGTGTYK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+RDHISYQGKGALTLADGTTHDFA
Sbjct:  928 EWRIRFANGDHFAGTVLEGVPHGTGTYKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRDHISYQGKGALTLADGTTHDFA 1013
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BLAST of mRNA_L-elsbetiae_contig2010.6041.1 vs. uniprot
Match: A0A6H5KU41_9PHAE (Avl9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU41_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.460e-19
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 EWRIRFANGDDYAGTVMDGAPHGTGTYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRDHISYQGKGALTLADGTTHDFA 258
            EWRIRFANGD YAGTV++G PHGTGTYK XXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXX+RDHISY GKGALTLADGTTHDF+
Sbjct:  522 EWRIRFANGDHYAGTVLEGVPHGTGTYKYXXXXXXXXXXDRXXXXXXXXXXXXXXXXXXXXXVRDHISYHGKGALTLADGTTHDFS 607
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BLAST of mRNA_L-elsbetiae_contig2010.6041.1 vs. uniprot
Match: A0A024U3L8_9STRA (UDENN domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3L8_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.410e-5
Identity = 57/86 (66.28%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:    1 EWRIRFANGDDYAGTVMDGAPHGTGTYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRDHISYQGKGALTLADGTTHDFA 258
            +W I FA G  Y G  + G PHGTG  K   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +H+S  GKG LT+A+GT H +A
Sbjct:  964 DWHITFATGSAYNGQCVQGKPHGTGVCKYTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNHVSLNGKGTLTMANGTVHAYA 1049
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2010.6041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT00_ECTSI4.340e-2091.86Avl9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KU41_9PHAE1.460e-1988.37Avl9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A024U3L8_9STRA6.410e-566.28UDENN domain-containing protein n=1 Tax=Aphanomyce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2010contigL-elsbetiae_contig2010:9127..10099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog2880.D7FT00
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG4642@1,COG5253@1,KOG0229@2759,KOG0231@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.521259-CDS-L-elsbetiae_contig2010:9126..92741622815832.521259-CDS-L-elsbetiae_contig2010:9126..9274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2010 9127..9274 -
1691683132.8241763-CDS-L-elsbetiae_contig2010:9126..92741691683132.8241763-CDS-L-elsbetiae_contig2010:9126..9274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2010 9127..9274 -
1622815832.531956-CDS-L-elsbetiae_contig2010:9986..100991622815832.531956-CDS-L-elsbetiae_contig2010:9986..10099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2010 9987..10099 -
1691683132.838513-CDS-L-elsbetiae_contig2010:9986..100991691683132.838513-CDS-L-elsbetiae_contig2010:9986..10099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2010 9987..10099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2010.6041.1prot_L-elsbetiae_contig2010.6041.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2010 9127..10099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2010.6041.1

>prot_L-elsbetiae_contig2010.6041.1 ID=prot_L-elsbetiae_contig2010.6041.1|Name=mRNA_L-elsbetiae_contig2010.6041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
EWRIRFANGDDYAGTVMDGAPHGTGTYKYANGDIFTGCWDRGLRHGQGIC
VFANGERFEGEWLRDHISYQGKGALTLADGTTHDFA*
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mRNA from alignment at L-elsbetiae_contig2010:9127..10099-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2010.6041.1 ID=mRNA_L-elsbetiae_contig2010.6041.1|Name=mRNA_L-elsbetiae_contig2010.6041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=973bp|location=Sequence derived from alignment at L-elsbetiae_contig2010:9127..10099- (Laminarionema elsbetiae ELsaHSoW15)
GAGTGGAGAATACGCTTCGCCAACGGAGATGACTACGCCGGGACCGTCAT
GGACGGAGCCCCCCACGGTACAGGGACCTACAAGTACGCCAATGGGGATA
TCTTCACCGGGTGGTAAGCTGAGTTGGTTTGGAACTCTTTTCATTATATA
CAATACATGCGCATGCATGCATGCCCCAAAGCGGTTTTTGCAGCAATGCC
GGGTATGGCTGTTGCTCAATGCTCAATAACCTTTTCAAATCTTAAGGGTG
CCGCCCTTCAACGGGGAAATCTTCGCGGGAGGGTTGGCCAAGGGTACCGT
AGATGACACGAGGTACTATCCCCCCCCCCTTCCCCTGGACATGTTTTCAA
AGCTCGATTCCTCCGTAGGGAAGAGGGCGCCAGCACCAAACGACACCTTT
TCGGAAAGCCCTCGACTAGATTTTTCCAACGCCACCCCATTTTCCGGCTC
TGGCTTTCTCCTTGCTGGATAGGAATCGAGCATTGATAATCTGTCTGGGG
GGGGGGGGGGGGGGGGGGTATCTTGTGTCACCTACGGTAGACGAAAACTC
AATACCTTTGACGGGACAACGCGAGGAAATTGCTGCTTCTCTTTCTCAGG
GATGGAAATATTGCAAATATTGATATGTAGCTCTCTGTCTACAGATGGTG
GATAAGCCAAACATACGAGGAAGGGGCGGGCGCGTGCCCTGCTAACTCCG
CCAACGTGTTACACTACCCTATGTTTTCATTACATGTCTTTTTTTTAACC
TTCTTTATCTCCTTCTGCTTTTGCTCGCACTTTCTGCGTGTGCCCGGTTC
TTCGTTTTATGGCATCCATTGGCAGTTGGGATCGAGGCCTGCGACACGGA
CAGGGCATCTGCGTGTTTGCCAACGGGGAGAGGTTCGAGGGGGAGTGGCT
GCGCGACCACATCTCGTACCAGGGGAAGGGGGCGCTCACCCTCGCAGACG
GGACCACGCACGACTTTGCTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2010:9127..10099-

>mRNA_L-elsbetiae_contig2010.6041.1 ID=mRNA_L-elsbetiae_contig2010.6041.1|Name=mRNA_L-elsbetiae_contig2010.6041.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig2010:9127..10099- (Laminarionema elsbetiae ELsaHSoW15)
GAGTGGAGAATACGCTTCGCCAACGGAGATGACTACGCCGGGACCGTCAT
GGACGGAGCCCCCCACGGTACAGGGACCTACAAGTACGCCAATGGGGATA
TCTTCACCGGGTGGAGTGGAGAATACGCTTCGCCAACGGAGATGACTACG
CCGGGACCGTCATGGACGGAGCCCCCCACGGTACAGGGACCTACAAGTAC
GCCAATGGGGATATCTTCACCGGGTGTTGGGATCGAGGCCTGCGACACGG
ACAGGGCATCTGCGTGTTTGCCAACGGGGAGAGGTTCGAGGGGGAGTGGC
TGCGCGACCACATCTCGTACCAGGGGAAGGGGGCGCTCACCCTCGCAGAC
GGGACCACGCACGACTTTGCTTAATTGGGATCGAGGCCTGCGACACGGAC
AGGGCATCTGCGTGTTTGCCAACGGGGAGAGGTTCGAGGGGGAGTGGCTG
CGCGACCACATCTCGTACCAGGGGAAGGGGGCGCTCACCCTCGCAGACGG
GACCACGCACGACTTTGCTTAA
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