mRNA_L-elsbetiae_contig201.6035.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig201.6035.1
Unique NamemRNA_L-elsbetiae_contig201.6035.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig201.6035.1 vs. uniprot
Match: D8LKP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP2_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.210e-28
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = -1 
Query:   67 IAFQPYYCGVEAPDTSAGGGESRSTKYLRFGHSMTETFECDLRSLLGKDVFFYDPYIVDE 246
            ++ QPYYCGV APDTSAGGG+SRS+KYL+FGHSMTETFECDL+SLLG++ FFYDPYIVDE
Sbjct:  240 MSTQPYYCGVGAPDTSAGGGQSRSSKYLKFGHSMTETFECDLKSLLGEEAFFYDPYIVDE 299
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig201.6035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKP2_ECTSI4.210e-2881.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig201contigL-elsbetiae_contig201:12519..12834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815831.97411-CDS-L-elsbetiae_contig201:12518..128331622815831.97411-CDS-L-elsbetiae_contig201:12518..12833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig201 12519..12833 +
1691683132.439466-CDS-L-elsbetiae_contig201:12518..128331691683132.439466-CDS-L-elsbetiae_contig201:12518..12833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig201 12519..12833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig201.6035.1prot_L-elsbetiae_contig201.6035.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig201 12519..12833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig201.6035.1

>prot_L-elsbetiae_contig201.6035.1 ID=prot_L-elsbetiae_contig201.6035.1|Name=mRNA_L-elsbetiae_contig201.6035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
RECVSRLFNGGENRTKAFDKYYLVDDVRVVEEDILSEERPQVALKRFRHA
VPEPEIFRTAAFAPSGRRVWRLDPAVVRLESDARGCGQTTTWSRFCCCRG
QESEM
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mRNA from alignment at L-elsbetiae_contig201:12519..12834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig201.6035.1 ID=mRNA_L-elsbetiae_contig201.6035.1|Name=mRNA_L-elsbetiae_contig201.6035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=316bp|location=Sequence derived from alignment at L-elsbetiae_contig201:12519..12834+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGAATGCGTCTCCCGTCTGTTCAACGGCGGGGAAAACAGAACGAAAGC
ATTTGACAAGTATTACCTCGTCGACGATGTAAGGGTCGTAGAAGAAGACA
TCCTTTCCGAGGAGCGACCTCAGGTCGCACTCAAACGTTTCCGTCATGCT
GTGCCCGAACCTGAGATATTTCGTACTGCGGCTTTCGCCCCCTCCGGCCG
ACGTGTCTGGCGCCTCGACCCCGCAGTAGTACGGCTGGAAAGCGATGCAC
GGGGATGTGGACAAACGACAACATGGTCGAGGTTCTGCTGCTGTCGTGGT
CAGGAATCAGAGATGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig201:12519..12834+

>mRNA_L-elsbetiae_contig201.6035.1 ID=mRNA_L-elsbetiae_contig201.6035.1|Name=mRNA_L-elsbetiae_contig201.6035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig201:12519..12834+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGAATGCGTCTCCCGTCTGTTCAACGGCGGGGAAAACAGAACGAAAGC
ATTTGACAAGTATTACCTCGTCGACGATGTAAGGGTCGTAGAAGAAGACA
TCCTTTCCGAGGAGCGACCTCAGGTCGCACTCAAACGTTTCCGTCATGCT
GTGCCCGAACCTGAGATATTTCGTACTGCGGCTTTCGCCCCCTCCGGCCG
ACGTGTCTGGCGCCTCGACCCCGCAGTAGTACGGCTGGAAAGCGATGCAC
GGGGATGTGGACAAACGACAACATGGTCGAGGTTCTGCTGCTGTCGTGGT
CAGGAATCAGAGATGCGGGAATGCGTCTCCCGTCTGTTCAACGGCGGGGA
AAACAGAACGAAAGCATTTGACAAGTATTACCTCGTCGACGATGTAAGGG
TCGTAGAAGAAGACATCCTTTCCGAGGAGCGACCTCAGGTCGCACTCAAA
CGTTTCCGTCATGCTGTGCCCGAACCTGAGATATTTCGTACTGCGGCTTT
CGCCCCCTCCGGCCGACGTGTCTGGCGCCTCGACCCCGCAGTAGTACGGC
TGGAAAGCGATGCACGGGGATGTGGACAAACGACAACATGGTCGAGGTTC
TGCTGCTGTCGTGGTCAGGAATCAGAGATG
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