mRNA_L-elsbetiae_contig2007.6031.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2007.6031.1 vs. uniprot
Match: A0A6H5L552_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L552_9PHAE) HSP 1 Score: 484 bits (1247), Expect = 3.180e-160 Identity = 358/690 (51.88%), Postives = 439/690 (63.62%), Query Frame = 1 Query: 1 MFR-PKQG--RETLLPHSGNGRGGGGGLYGTARTTARAAISKSFIATMFWALVSVSLVGGGWLYCSKKMEYTSVKCNLKFCEVEELSSGVTKQTIIPHARMVRAELTRLKNGKVVNPATLRRSAQRKLGHTYSLVYMEPDSEDDDDESYDSFXXXXXXXXXXXXXXXXXXXXXXXNAGRAAAAARGAKK-----------PAARKVARA-----------RDLENRRKEEQRRKWAELRELEGYAPIKEPDEVEAKSRGSTYRRGGDAEEEERFPGDAGTMLDKNREEIRKMEAAQGMTAEGHRERSQKTYEEASKKAKSKHQMDSQMKQRGNNLHDRAAKPDPSSNXXXXXXXXXXXXXXXXXXXXEKRSPDDPDSKLPGGADGRRPKPERQEFEPALKVGGEGGGXXXXXXXXXXDNDVQEGKANAQKGGGRKISSVGGLEDADGDKPRRLSSRERDGRGDHDEGVRDAQDAQGVDDG--FDTLGEFVQ-AGAQGARRKLMNWKSRMVKNVDRPPSKRTKEEVMKDAAKDRDAHRKGHGHHQKRAKKVARPVASDD------DGAPKPRTKHHHKAFHHKKEVPLEDRHHVHHGYHHKPGEKKIDHGWKHQNRQWHGHKELKKPGTTFSLGRSVARKRKETIDSYVSRRVTTVDFTDSKKWRAGGLWMIILGCISAAFCIVIGNFQPR 1968 MFR P +G R+ LLPHSGNGR GGGGLYG AR++ +AA+SKSFIATM WAL+S+S++ GGW+YCS+KME T V C C++E+L +G T +IP +MVR EL R+KNG+VV+P LRRSAQRKLGH+Y++VY+EPDSEDDDDESYDS XXXXXXXXXXXXXXXXXXXXXXX A A+ AK+ P+ K A A R+ E RK+ QR KWA+ RE G PIKEPDE + + +T RGGD ++EERFPGDA TM +KNR EIR ME A+GMTAE HRE SQ+ +EEA+K K + D QM+Q GNNLH RA KP P ++ +K SPDDPD+ P RP ER + + L V GXXXXXXXXXX QG+D+G D G+ VQ GA G+RRKL++ K+ VK V PSK TKEE+ +DA+K R+ HR+GHGHHQKRA+KVA+P ++ DG P+P+TKHHHKAFHHK++VP DRH +PG+KKI+HGW+H +ELKK GT FSLGR+VARKRKE ID+YVSRRV+T+DFTDSKKWRAGGLW+II+GC+S AFCIVIGNFQPR Sbjct: 1 MFRVPSRGGSRDPLLPHSGNGRSGGGGLYGRARSSPKAALSKSFIATMVWALLSMSMIFGGWVYCSRKMESTWVLCEPGGCKIEDLRAGETTVLMIPRHKMVRGELVRVKNGEVVDPVKLRRSAQRKLGHSYNVVYLEPDSEDDDDESYDSXXXXXXXXXXXXXXXXXXXXXXXXXXYDMAVMAQRAKERLENAIPPAGGPSGAKAAMASFPNRYAAEARREAELVRKDAQRAKWAKDREERGLPPIKEPDEQQRQK--ATAARGGDFDDEERFPGDAATMREKNRREIRNMEEARGMTAEEHRELSQQAFEEAAKAHKEMQRRDQQMRQMGNNLHYRA-KPQPDTDNNN-----------------KKLSPDDPDNNPPAAG---RPPLERGQAQKDLDVNEGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXXXXXQGLDEGGRLDGFGDVVQHVGAAGSRRKLLSRKN-PVKQVVPKPSKPTKEELAEDASKSRETHRQGHGHHQKRARKVAQPTGPEERADGSLDGEPRPKTKHHHKAFHHKEDVPQADRHXXXXXXXXRPGDKKIEHGWRHXXXXXXXXEELKKLGTPFSLGRTVARKRKEAIDNYVSRRVSTLDFTDSKKWRAGGLWLIIVGCMSIAFCIVIGNFQPR 655
BLAST of mRNA_L-elsbetiae_contig2007.6031.1 vs. uniprot
Match: D7FJ58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ58_ECTSI) HSP 1 Score: 216 bits (551), Expect = 2.700e-62 Identity = 142/308 (46.10%), Postives = 179/308 (58.12%), Query Frame = 1 Query: 133 MFWALVSVSLVGGGWLYCSKKMEYTSVKCNLKFCEVEELSSGVTKQTIIPHARMVRAELTRLKNGKVVNPATLRRSAQRKLGHTYSLVYMEPDSEDDDDESYDSFXXXXXXXXXXXXXXXXXXXXXXXNAGRAAAAARGAKKPAARKVARARDLENRRKEEQRRKWAELRELEGYAPIKEPDEVEAKSRGSTYRRGGDAEEEERFPGDAGTMLDKNREEIRKMEAAQGMTAEGHRERSQKTYEEASKKAKSKHQMDSQMKQRGNNLHDRAAKPDPSSNXXXXXXXXXXXXXXXXXXXXEKRSPDDPDS 1056 M WAL+S+S++GGGW+YCS+KME T V C C++E+L +G T +IP +MVR EL R+KNG+VV+P LRRSAQRKLGH+Y++VY+EPDSED R AA AR R+ E RK+ QR KWA+ RE G PIKEPDE + + RGGD ++EERFPGDA TM +KNR EIR ME A+GMTAE HRER Q+ +EEA+K K + D QM+Q GNNLHDRA KP P ++ +K SPDDPD+ Sbjct: 1 MVWALLSMSMIGGGWVYCSRKMESTRVLCEPGGCKIEDLRAGETTVLMIPRHKMVRGELVRVKNGEVVDPIKLRRSAQRKLGHSYNVVYLEPDSEDPS---------------------------------RYAAEAR-------------REAELARKDAQRAKWAKDREERGLPPIKEPDEQRRQE--AKAARGGDFDDEERFPGDAATMREKNRREIRNMEEARGMTAEEHRERGQQAFEEAAKAHKEMQRRDQQMRQMGNNLHDRA-KPQPGTDNNNNN---------------KKLSPDDPDN 244 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2007.6031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2007.6031.1 >prot_L-elsbetiae_contig2007.6031.1 ID=prot_L-elsbetiae_contig2007.6031.1|Name=mRNA_L-elsbetiae_contig2007.6031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=656bp MFRPKQGRETLLPHSGNGRGGGGGLYGTARTTARAAISKSFIATMFWALVback to top mRNA from alignment at L-elsbetiae_contig2007:1210..15174- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2007.6031.1 ID=mRNA_L-elsbetiae_contig2007.6031.1|Name=mRNA_L-elsbetiae_contig2007.6031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=13965bp|location=Sequence derived from alignment at L-elsbetiae_contig2007:1210..15174- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2007:1210..15174- >mRNA_L-elsbetiae_contig2007.6031.1 ID=mRNA_L-elsbetiae_contig2007.6031.1|Name=mRNA_L-elsbetiae_contig2007.6031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3936bp|location=Sequence derived from alignment at L-elsbetiae_contig2007:1210..15174- (Laminarionema elsbetiae ELsaHSoW15)back to top |