mRNA_L-elsbetiae_contig2001.6021.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2001.6021.1
Unique NamemRNA_L-elsbetiae_contig2001.6021.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2001.6021.1 vs. uniprot
Match: D7G1H9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H9_ECTSI)

HSP 1 Score: 428 bits (1100), Expect = 1.800e-148
Identity = 222/303 (73.27%), Postives = 231/303 (76.24%), Query Frame = 1 
Query:    1 MGVDVFDLPPRGIPASERGQEQALPSQVLECIRSRHGLEEFAGGHLLLDPEYGPAEAAASGGTAVSEEDDE------------------GRG------LLFPGLRLLHAEPPVIGVDDFFTPEECDEYISRSVSPPPPVPASGVAKEGEV------GPHMQRSATLGADVDAVAQRTSTTWFHRFSAVTELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPTPELASKGGQRIATLLVYLTEVPDGDGGATAFRDLGPLRVRPRKGSALLFFPSCGGAPGCPFDIRTLHAGEV 819
            MGVDVFDLP  GIPASERGQ++ALP QVLECIR RHGL+EFAGG  LLDPEY  A+  A     +                        G G      LLFPGLRLLHAEPPVIGV DFFT EECDEYISRSVSPP                    GPHMQRSATLGADVDAVAQRTSTTWFHRFSAV ELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPP P+LAS+GGQRIATLLVYLTE+P+GDGGATAFRDLGPLRVRPRKGSALLFFPS GGAP CPFDIRTLHAGEV
Sbjct:    1 MGVDVFDLPAGGIPASERGQQEALPPQVLECIRGRHGLQEFAGGRRLLDPEYYGADGEAGDAALMGSXXXXXXXXXXXXXXXXXXXXXXGDGTAAKSRLLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEV 303
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BLAST of mRNA_L-elsbetiae_contig2001.6021.1 vs. uniprot
Match: A0A6H5L0Y5_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y5_9PHAE)

HSP 1 Score: 429 bits (1102), Expect = 1.640e-145
Identity = 227/313 (72.52%), Postives = 234/313 (74.76%), Query Frame = 1 
Query:    1 MGVDVFDLPPRGIPASERGQEQALPSQVLECIRSRHGLEEFAGGHLLLDPEYGPAE-----AAASG-------------------------GTAVSEEDDEGRGLLFPGLRLLHAEPPVIGVDDFFTPEECDEYISRSVSPPPPVPASGVAKEGEV----------GPHMQRSATLGADVDAVAQRTSTTWFHRFSAVTELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPTPELASKGGQRIATLLVYLTEVPDGDGGATAFRDLGPLRVRPRKGSALLFFPSCGGAPGCPFDIRTLHAGEV 819
            MGVDVFDLP  GIPASERGQ++ALP QVLECIR RHGLEEFAGG  LLDPEY  A+     AA +G                         GTA          LLFPGLRLLHAEPPVIGV DFFT EECDEYISRSVSPP                        GPHMQRSATLGADVDAVAQRTSTTWFHRFSAV ELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPP P+LASKGGQRIATLLVYLTE+P+GDGGATAFRDLGPLRVRPRKGSALLFFPS GGAP CPFDIRTLHAGEV
Sbjct:  223 MGVDVFDLPAGGIPASERGQQEALPPQVLECIRGRHGLEEFAGGRRLLDPEYFGADGEAGDAALTGSXXXXXXXXXXXXXXXXXXXXXGGDGTAAKSR------LLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXXXXXXXGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASKGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEV 529
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BLAST of mRNA_L-elsbetiae_contig2001.6021.1 vs. uniprot
Match: A0A6H5KGF5_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGF5_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 3.110e-71
Identity = 129/255 (50.59%), Postives = 156/255 (61.18%), Query Frame = 1 
Query:   55 GQEQALPSQVLECIRSRHGLEEFAGGHLLLDPEYGPAEAAASGGTAVSEEDDEGRGLLFPGLRLLHAEPPVIGVDDFFTPEECDEYISRSVSPPPPVPASGVAKEGEVGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVTELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPTPELASKGGQRIATLLVYLTEVPDGDGGATAFRDLGPLRVRPRKGSALLFFPSCGGAPGCPFDIRTLHAGEV 819
            G+  A P +V + IR RHG E F                            DE    LFPG+RLLHA+P V  V+ FFTP+ECD YI+ S      +  SG  ++G + P   +SAT  +        TSTTWFH +++  EL+AKAS L+GV  +  +WEE QTVRYRPGE+F WHLDALPP+   ASKGGQR AT+LVYLT +    GGATAFRDLGPLRVRP+KG  L+FFPS GG  G PFD R LHAGEV
Sbjct:   91 GKATAFPVEVADRIRERHGFEHF----------------------------DE---KLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMST-----LKKSG-RRKGGLAPTELQSATTSSQCQQXX--TSTTWFHHYASAPELVAKASLLLGVD-DYSKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEV 305
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BLAST of mRNA_L-elsbetiae_contig2001.6021.1 vs. uniprot
Match: A0A7S2N1B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1B0_9STRA)

HSP 1 Score: 222 bits (565), Expect = 3.400e-68
Identity = 113/202 (55.94%), Postives = 140/202 (69.31%), Query Frame = 1 
Query:  229 FPGLRLLHAEPPVIGVDDFFTPEECDEYISRSVSPPPPVPASGVAKEGEVGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVTELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPTPELASKGGQRIATLLVYLTEVPDGDGGATAFRDLG-----PLRVRPRKGSALLFFPSCGGAPGCPFDIRTLHAGEV 819
            F   R+LH +P ++ +DDF TP ECD YIS + +P     A+    E      + +S T+G D+ + +QRTSTTWFH +  +  LMAKAS L+G+   E RWEE QTVRYR  EKFTWHLDAL P+ EL   GGQR+ATLLVYL ++PDG GG+T FRDLG     PL+V+P+KGSALLFFP+ GG P  PFDIRTLHAGE 
Sbjct:   57 FTKFRILHTDPMLLSIDDFLTPTECDTYISLTSNPKYDKNANTAPME------IGQSKTVGKDMYSKSQRTSTTWFHHYRGMAGLMAKASRLLGLKGIE-RWEEPQTVRYRRSEKFTWHLDALAPSEELTKAGGQRVATLLVYLADLPDGCGGSTMFRDLGGESGEPLKVQPKKGSALLFFPAAGGIPNVPFDIRTLHAGEA 251
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BLAST of mRNA_L-elsbetiae_contig2001.6021.1 vs. uniprot
Match: A0A7S2UAB3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAB3_9STRA)

HSP 1 Score: 224 bits (571), Expect = 7.470e-67
Identity = 120/204 (58.82%), Postives = 142/204 (69.61%), Query Frame = 1 
Query:  229 FPGLRLLHAEPPVIGVDDFFTPEECDEYISRSVSPPPPVPASGVAKEGEVGPHMQ--RSATLGADVDAVAQRTSTTWFHRFSAVTELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPTPELASKGGQRIATLLVYLTEVPDGDGGATAFRDLG-----PLRVRPRKGSALLFFPSCGGAPGCPFDIRTLHAGEV 819
            F   R+LH +P V+ VDDFFTPEECD  I+RS +    + A    KEG     M+  +S T+G D  A AQRTSTTWFH ++ V ELMAKA  L+G+  +   +EE QTVRYR  E FTWHLDAL PTPELA KGGQR ATLLVYLT++ + DGGAT FRDLG     PL+VRP+KGSALLFFP+ GG P  P D+RTLH GE 
Sbjct:  235 FSKFRVLHVDPMVLCVDDFFTPEECDALIARSTTTV--ITADNNEKEGTTLLPMKIGQSKTVGKDSRARAQRTSTTWFHHYAGVPELMAKACRLMGIN-DISAFEEPQTVRYRRTEHFTWHLDALAPTPELADKGGQRCATLLVYLTDLSEKDGGATMFRDLGGSDGEPLKVRPKKGSALLFFPAAGGIPSVPLDLRTLHCGEA 435
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BLAST of mRNA_L-elsbetiae_contig2001.6021.1 vs. uniprot
Match: A0A7S2KCF3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF3_9STRA)

HSP 1 Score: 223 bits (568), Expect = 7.520e-67
Identity = 121/202 (59.90%), Postives = 143/202 (70.79%), Query Frame = 1 
Query:  229 FPGLRLLHAEPPVIGVDDFFTPEECDEYISRSVSPPPPVPASGVAKEGEVGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVTELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPTPELASKGGQRIATLLVYLTEVPDGDGGATAFRDLGP-----LRVRPRKGSALLFFPSCGGAPGCPFDIRTLHAGEV 819
            F   R+LH +P VI VDDFFT EECD+YI+ S       P +G  K+G+    M RS T+G D  A +QRTSTTWFH +  V ELMAK+S L G+  + G +EE QTVRY+P +KFTWHLDAL P  E  SKGGQR ATLLVYLT++   DGGAT FRDLGP     L+V+P+KGSALLFFP+ GG P  PFDIRTLHAGEV
Sbjct:  202 FDKFRVLHIDPLVIAVDDFFTHEECDKYIAMSD------PTAG-NKDGDAV--MTRSMTVGKDAAAKSQRTSTTWFHHYKNVPELMAKSSRLFGLD-DIGVFEEPQTVRYQPDQKFTWHLDALAPGSENISKGGQRTATLLVYLTDLGPEDGGATTFRDLGPAEGEPLKVQPKKGSALLFFPAAGGIPNTPFDIRTLHAGEV 393
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BLAST of mRNA_L-elsbetiae_contig2001.6021.1 vs. uniprot
Match: A0A7S1ZRX7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRX7_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.090e-65
Identity = 108/203 (53.20%), Postives = 139/203 (68.47%), Query Frame = 1 
Query:  229 FPGLRLLHAEPPVIGVDDFFTPEECDEYISRSVSPPPPVPASGVAKEGEVGP-HMQRSATLGADVDAVAQRTSTTWFHRFSAVTELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPTPELASKGGQRIATLLVYLTEVPDGDGGATAFRDLG-----PLRVRPRKGSALLFFPSCGGAPGCPFDIRTLHAGEV 819
            F   R+LH +P V+ VDDF T +ECD  ++ + +P          K     P  + +S T+G D+ + +QRTSTTWFH +  + +LMAKAS L+G+   + RWEE QTVRYR  EKFTWHLDAL P+ ELA  GGQR+ATL+VYL ++P+G GG+T FRDLG     PL+V P+KGSAL+FFP+ GG P  PFDIRTLHAGE 
Sbjct:   26 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPK-------YDKNANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNID-RWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEA 220
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BLAST of mRNA_L-elsbetiae_contig2001.6021.1 vs. uniprot
Match: A0A7S4QXQ4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXQ4_9STRA)

HSP 1 Score: 213 bits (543), Expect = 5.310e-64
Identity = 108/203 (53.20%), Postives = 139/203 (68.47%), Query Frame = 1 
Query:  229 FPGLRLLHAEPPVIGVDDFFTPEECDEYISRSVSPPPPVPASGVAKEGEVGP-HMQRSATLGADVDAVAQRTSTTWFHRFSAVTELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPTPELASKGGQRIATLLVYLTEVPDGDGGATAFRDLG-----PLRVRPRKGSALLFFPSCGGAPGCPFDIRTLHAGEV 819
            F   R+LH +P V+ VDDF T +ECD  ++ + +P          K     P  + +S T+G D+ + +QRTSTTWFH +  + +LMAKAS L+G+   + RWEE QTVRYR  EKFTWHLDAL P+ ELA  GGQR+ATL+VYL ++P+G GG+T FRDLG     PL+V P+KGSAL+FFP+ GG P  PFDIRTLHAGE 
Sbjct:  123 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPK-------YDKNANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNID-RWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEA 317
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BLAST of mRNA_L-elsbetiae_contig2001.6021.1 vs. uniprot
Match: K0SVE6_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVE6_THAOC)

HSP 1 Score: 214 bits (545), Expect = 4.730e-63
Identity = 113/202 (55.94%), Postives = 140/202 (69.31%), Query Frame = 1 
Query:  229 FPGLRLLHAEPPVIGVDDFFTPEECDEYISRSVSPPPPVPASGVAKEGEVGPHMQ-RSATLGADVDAVAQRTSTTWFHRFSAVTELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPP-TPELASKGGQRIATLLVYLTEVPDGDGGATAFRDLG---PLRVRPRKGSALLFFPSCGGAPGCPFDIRTLHAGEV 819
            F   R+LH +P VI VDDFFT EECD+Y+  S+        +   + G + P +  +S T+G D  + AQRTSTTWFH ++ V ELMA+A+ L+G+P    R+EE QTVRYR  EKFTWHLDAL P     +S  GQR++TLLVYLT++   +GGAT FRDLG   PL+VRP+KGSALLFFPS GG P CPFDIRTLH GE 
Sbjct:  229 FEQFRVLHVDPMVIAVDDFFTSEECDKYVQMSID----AENNQDQEAGALQPLLLGQSQTVGKDSRSKAQRTSTTWFHHYAGVPELMARAARLLGLP-GISRFEEPQTVRYRRSEKFTWHLDALSPDVANDSSSAGQRVSTLLVYLTDLKSEEGGATMFRDLGGDGPLKVRPKKGSALLFFPSAGGIPDCPFDIRTLHCGEA 425
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BLAST of mRNA_L-elsbetiae_contig2001.6021.1 vs. uniprot
Match: A0A7S2KB24_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KB24_9STRA)

HSP 1 Score: 214 bits (544), Expect = 5.130e-63
Identity = 121/216 (56.02%), Postives = 141/216 (65.28%), Query Frame = 1 
Query:  229 FPGLRLLHAEPPVIGVDDFFTPEECDEYISRSVSPPPPVPASGVA------KEGEVGPHMQ-RSATLGADVDAVAQRTSTTWFHRFSAVTELMAKASALVGVPFEEG--RWEEAQTVRYRPGEKFTWHLDALPPTPELASKG-GQRIATLLVYLTEVPDGDGGATAFRDLG---------PLRVRPRKGSALLFFPSCGGAPGCPFDIRTLHAGEV 819
            F   R+LH +P V+ +DDFFT EECD+Y+  S+        S  A      +E  + P +  +S T+G D  + AQRTSTTWFH +  V ELMAKAS L+G+   EG  R+EE QTVRYR  EKFTWHLDAL P       G GQRIATLLVYLT+VP G GGAT FRDLG         PL+VRP+KGSALLFFPS GG PG PFDIRTLH GE 
Sbjct:  204 FEKFRVLHTDPMVLAIDDFFTNEECDKYVQISIDAEKQQTNSAAAGDETTQEETALQPMLLGQSQTVGKDSRSKAQRTSTTWFHYYKGVPELMAKASRLLGL---EGIDRFEEPQTVRYRRNEKFTWHLDALSPEEANNPSGSGQRIATLLVYLTDVPAGSGGATMFRDLGGNNGAEDSQPLKVRPKKGSALLFFPSAGGIPGAPFDIRTLHCGEA 416
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2001.6021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1H9_ECTSI1.800e-14873.27Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6H5L0Y5_9PHAE1.640e-14572.52Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6H5KGF5_9PHAE3.110e-7150.59Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A7S2N1B0_9STRA3.400e-6855.94Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2UAB3_9STRA7.470e-6758.82Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2KCF3_9STRA7.520e-6759.90Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1ZRX7_9STRA3.090e-6553.20Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4QXQ4_9STRA5.310e-6453.20Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
K0SVE6_THAOC4.730e-6355.94Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2KB24_9STRA5.130e-6356.02Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2001contigL-elsbetiae_contig2001:14583..20554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score427.6
Seed ortholog evalue4.5e-117
Seed eggNOG ortholog2880.D7G1H9
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
EC1.14.11.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionOxoglutarate/iron-dependent dioxygenase
Ec32 orthologEc-07_001070.1
Exons5
Model size819
Cds size819
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2001.6021.1prot_L-elsbetiae_contig2001.6021.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2001 14583..20554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.3706152-CDS-L-elsbetiae_contig2001:14582..148171622815830.3706152-CDS-L-elsbetiae_contig2001:14582..14817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 14583..14817 +
1691683131.3567548-CDS-L-elsbetiae_contig2001:14582..148171691683131.3567548-CDS-L-elsbetiae_contig2001:14582..14817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 14583..14817 +
1622815830.3884583-CDS-L-elsbetiae_contig2001:15134..153341622815830.3884583-CDS-L-elsbetiae_contig2001:15134..15334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 15135..15334 +
1691683131.3696868-CDS-L-elsbetiae_contig2001:15134..153341691683131.3696868-CDS-L-elsbetiae_contig2001:15134..15334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 15135..15334 +
1622815830.4007986-CDS-L-elsbetiae_contig2001:15699..158131622815830.4007986-CDS-L-elsbetiae_contig2001:15699..15813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 15700..15813 +
1691683131.3791676-CDS-L-elsbetiae_contig2001:15699..158131691683131.3791676-CDS-L-elsbetiae_contig2001:15699..15813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 15700..15813 +
1622815830.4180858-CDS-L-elsbetiae_contig2001:16104..162901622815830.4180858-CDS-L-elsbetiae_contig2001:16104..16290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 16105..16290 +
1691683131.389999-CDS-L-elsbetiae_contig2001:16104..162901691683131.389999-CDS-L-elsbetiae_contig2001:16104..16290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 16105..16290 +
1622815830.428961-CDS-L-elsbetiae_contig2001:20470..205541622815830.428961-CDS-L-elsbetiae_contig2001:20470..20554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 20471..20554 +
1691683131.3998272-CDS-L-elsbetiae_contig2001:20470..205541691683131.3998272-CDS-L-elsbetiae_contig2001:20470..20554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 20471..20554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2001.6021.1

>prot_L-elsbetiae_contig2001.6021.1 ID=prot_L-elsbetiae_contig2001.6021.1|Name=mRNA_L-elsbetiae_contig2001.6021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=273bp
MGVDVFDLPPRGIPASERGQEQALPSQVLECIRSRHGLEEFAGGHLLLDP
EYGPAEAAASGGTAVSEEDDEGRGLLFPGLRLLHAEPPVIGVDDFFTPEE
CDEYISRSVSPPPPVPASGVAKEGEVGPHMQRSATLGADVDAVAQRTSTT
WFHRFSAVTELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALP
PTPELASKGGQRIATLLVYLTEVPDGDGGATAFRDLGPLRVRPRKGSALL
FFPSCGGAPGCPFDIRTLHAGEV
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mRNA from alignment at L-elsbetiae_contig2001:14583..20554+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2001.6021.1 ID=mRNA_L-elsbetiae_contig2001.6021.1|Name=mRNA_L-elsbetiae_contig2001.6021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5972bp|location=Sequence derived from alignment at L-elsbetiae_contig2001:14583..20554+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGTCGACGTGTTTGATCTCCCACCCAGAGGCATCCCCGCGAGCGA
GCGCGGCCAGGAGCAGGCGCTACCATCCCAGGTCCTCGAGTGCATACGCA
GCCGGCACGGTCTTGAAGAGTTTGCCGGCGGTCATCTGCTTCTCGATCCC
GAGTACGGACCTGCTGAGGCTGCGGCGTCTGGCGGTACTGCTGTCTCGGA
GGAGGATGACGAGGGGAGAGGCTTGCTGTTCCCAGGTATGTATCTAGATA
GAGTAGATCATGATACAACGTGAAATCGTTTTCAAGAAGACTACAGTAGT
AGCGATTGGGATTTTTAGATTATTAAAGCTGCAGGCCTGAGCTTGCTGCA
CCACAAAAACTGGAGTCGGCGGCGAGCACTTACCAAGAGGGAGCTCATTC
CTGCGCCTCCTTGAAAACGGATATCACTGCAGGGCTGCGGCTTCTGCATG
CGAATACTTGAATTCCGGGTCGTTTCTCTCACTCCTCTCCCTCACGCTTG
CGCCAACGATCTTGCTCCATCTGTGGCACCATGGCATGGCATGGTGTGGC
AGGGTTGCGGCTCCTCCATGCCGAGCCGCCCGTTATCGGCGTGGATGATT
TCTTCACCCCTGAGGAGTGCGACGAGTACATCTCCAGGTCGGTGTCTCCA
CCACCTCCTGTCCCAGCGTCGGGGGTTGCTAAGGAGGGGGAGGTGGGGCC
GCATATGCAGCGTAGTGCTACGCTGGGTGCGGACGTGGATGCCGTAGCGC
AGGTGAGAGGAAGATGCGTGTGGGGCTCGATAGAACCGCGCTGTAATTCT
CGTGTCTTGATTCCCAGGCCGCCGGCAGCGTGGGCTCTGTTGATTCTACA
TAGGTCCTACCTCCGTTTTCAGAAGCCTCTGCCACTAAAGTATGTGACGC
CAAAGCTTCCACTGCCGCCAAGCTATGAACCCCAACAAGACTGCAGTGCG
TTCCAACCCAATCCTTTTTTGAGCGACCGACACAATACTAATATTGCTCT
TTGCTTGTTCAGCGACGTGCTGCCGCCACGAGAGAGATTCCCACAGTTTG
TTGTCGGAATGAATGCGCGATCAGCAGCACACGCCCCCCCGCTCTCATGC
CTTGCGTGCGTCGCCAGCGCACGTCCACAACCTGGTTCCACCGCTTTTCG
GCGGTGACTGAGCTGATGGCCAAGGCGTCCGCGCTCGTGGGAGTTCCGTT
CGAGGAGGGGCGTTGGGAAGAGGCGCAGACGGTAAGCAGCGGCAAAGCCG
AACGGTGCATTTGTCGATTTTGCAAGCTCTCGATTCAACGCCGGTCTATA
CCCATGAGAGCTCCGCACGTTTTGATTCAGAAGGCGCGCCGGTTTTAGCA
CTGTATACTGTAGTTGGGCCTATAGAAGATCACCGCACCCAATGTACATA
GGCCACTGCTCCGAGGACGATCATCTCCGAACTTCCAGGAATACGTAAGG
CCATCTCCCGAGCCTTACCCCCCCCCCGCCCCCCCGCACACACGCGCCGA
CGGCCACAATAAACATGCTCAGGTCCGATACAGACCAGGAGAGAAGTTCA
CCTGGCACCTGGACGCCCTCCCCCCGACGCCGGAGTTAGCCTCGAAGGGG
GGTCAGAGGATCGCGACGCTGCTGGTGTACCTCACCGAAGTGCCCGATGG
GGACGGCGGAGCCACGGCCTTTCGGGATCTGGGCCCACTTCGTGTCCGCC
CCCGCAAGGTTTGTGATTCTGTCTCGCGGTGTCTTTTGCGTGTATTGTGT
CTTTGTCTGCGGGAGCAAGAAGAACATCAACCAGCCAAACGACCCTCAGT
CTCCCCCCAGCCCCCCCCCATACCACTCGAATATAAGGCCGTTGATCCCA
ACAACCCCGTTGTACAGCAAGGCGTGCACGGATCTGAATACTTCATACCG
GTCCAGTACGGTTGTCCCGGTATACCGTGATACTCCGTGTCATCTGAGAA
CGCCTCGTTCGAAGAGACCCTCCCCCCCCCCAACGAAAGCACGGCCGGTG
CACCCCCGCATACTTTGCAAGGCCCCGGGGTGATCAATGTTCGTTTTGGT
TGCCCTTTTGCCTGTGAGAACACCCGGGGAGTTGGGCCACTCCCGGGGAG
GCCGCACAATACGGCGGTGAAAGGCAGACAACTGCCCCATGTGCCCTCCT
CCTGCGTTGTTGCTTACTGGCGTTGATTTGGCTCCATGTTGCTTTAGGTC
GGTTCTTATATTTAGAATCAGAAAAGTCGACGAGGAATGGTTTTATGCCT
GTTTCGCACTGAAACCCCGACGCAGTCAAGAAATGTTGTTTAGTTCGAGC
CCGAGCTGGTCGTTGGTGCTTCGCATTTGCCACACAGTCCATCCAGAGCA
AAATCTGCCTTGGGTGGTGACGGTCAGTAGCATTAACCTCACGTCCTCGA
ATTTAAGAGCGATCTGTGAACATAGTGCCAATGAATTGACACACACGTTT
CTTTCTTCAGCGGTCTTTGATTCCATGGAATTTAAGTCCGCATATGACCC
CCCTGTTATTCCTGTGATCGATTGGTGACCGACTTCGTCCAACAGCGTTA
CAGGAAATGTTTTTTGAGTTTTTCTTTAGCGCGGCGGGGATGCAATGCCC
AAAAAACGGCACGCCTACTTAAAACAGTTTCACAGAATGGGGCCTCCTCC
AAACACGGGGCCTCCAGATATCCCAACCGAGGGGCGCATGGAGAAGCCGA
AGCTCAGCGAGGAGACAATTATACCAGCAGGGGTTTCGAGGTGGTGTGAT
ACAAATGTGTGGCCGGAGAGGTGACCACTTCAGGTTGCAGCTTATTGCAC
AGCGATGACTCTGTGCGTCGCAGATGTTTTTGTAAAGTAAGAGAGAGAAA
AAGAAAGGGAGAGCCAGCTGGCAGACAGGAGTACGAGTATCGATGCAGAA
CAAAGCTTTTTTAGTCCTCCCGGAGATTGCGCGCGACGGCAAGAAATGGG
ACTCAGGCGTGCAGAAGCCCTCAACAGTAGAAACAGCGGTGCATAGTGGT
ACCTACAGCTAACCCGCGAAGAGCATCAAACTCTGCTGGTCTAGCTACAT
AGAATCTGCACCAGCAGTTTCCTTTGAGGAGATCGAATTCCTTGCAGTTT
TTACGGCACATACAGGGTACATACAGCATGTGGGCTTCTTAGCGCGATCG
CACGGGTGCAGCTCGATGGTGGGGGGGGGGGGGCGCCATATTTTGGGGCG
GTATGTTTGCTCTGCGCGGTCCCGCGGTCCCGGCTTGATCTTTGGTTGCC
CTTAATCACCCATGCTTAAGCGCCTAGACCATCGATCCGCTTCATTGTTT
CTTCTCCACCCTCGACCAGCACAGCAGTTACTGGCCGTTTCTTTTCGCGA
TGCCGAACCCAGCACATAGCAACAAGCAATTTTTGTTGTTGTTGTTGCTG
TTGCTGTTGCTGTCTCCACATTAATAACCGTTCCGATCCCTCTATCCATA
CCACTCCATCAGTCCGTACTAATCCAACACTGGCACGGTTGATTCGCGTG
GTCACAGGACAACTTACCCTAAAAAGGTATACTGAAAATAGAAAATAATA
AAATGAACCCGAAGGGTCTACGAAGCACAAAAACAAAAGATTAGACACAG
ATAATCTGGAGCCCTCCGCTCCCCTCTACACGCTATGTGTGAAGTGTAAA
CAAAGGTTGAAAAGCCGACATCATCAACCGCGGGGGATACATCCCCTGGT
TCTATCTTGGTATCCCAACAATGCCGGGGTTTTCCGCGCCGGGTTCTCGC
TGGTCAGGCCCACCAATCTAGTCCTCACCAACCATTGTACCGCACACATG
ATGCGTACAGCAAGAGGGAAGAAAAAGACATTCCAATTTTCAATTGGTTG
GTTCTTTCAGGCCTTTCGTTTGAGCTCTATATTTTCTTGTGATCCAAACA
TTTTCAAAACCTTTTCAAAAATTTTCATTTTTTTCAAAAAAGTGACCCCT
TTCCCACACGTTATAATCCCTATTGATTTCAGCTTTTTGCGGCTATCTTT
CTCAAACTCAAACCAATCGACTATTCCTTGCACGGGCACCTCAACACACG
GCAGTAGCTGCTCTGTGCCAAGGGGCAACCTCGATCTCAAACGTTTCGAT
CAGATACGGCCGTCGACTTTTGGACCCAATCCATGCTGAAACCCCTATTG
ATCTCGGGGATGTCTGTTTTTTTGGAGATATCTTTCTCAAAAAGGAAGCA
ATCGCTCATTCCTTCCGCAGGCGCCTCGACACACTACCGTAGCTGCTCTC
GGCCAAGTCTCATCGCCAATCTCCAAGTTTGTCATCAGATACGACCGTCG
CATCTTGTCACCCGATGTTTACAGCAGTCATGACAACACACACGATGCAC
ACAACACAGCAGTGCACAGAGATGACCGAACGAGAGATGTGAACACACAG
CAGCAGCGCGTCGGTGCTGTTTCCCGTTGTGTCAGCAGCAGAGAGAGGTT
GACAGGTAGGTGGGGTTGTCAGGGTTTGCAATAGCAACCGACGCTGTGCT
GCTCGCGTTGTTTGTTCAATCGTGCTGCTCCTCCCGGAGGTCTCGTCTTT
GCGTTCCCCACCACGTCCTCCAACCCCGCAGACGTTCCCACTGCTTCCTA
CATCATCATCTGTGTGGTATGATCAGTGTCGGCTGTCATCTTTAGAGGTG
TAGCGTTACTTTGTCTAGAGTAGTCTACTGCTGTCTTTCCAGTGCGCGGT
CACCGGGGTAAAAAATCATTTTTCTTGGCAATGTCCAGCTGGGGTTGTAC
GTTATTTCGCGCAGAAAACAATACAACATGACAAAGAGGCATTTTTTTGC
TGCGGATGTTGAGCGTGACTTCTTGACGAGCTCTGCAGCGAGGATGTACT
CGATTTCTATACGGTTTTTTACATAGTGCTCCAGTGAACCTCAAGGATTC
CTTTCACCTCTCCATTGGTTTAGTGTCCAAACAATACACCCATAAATACA
ACAATCAGCGGCAGCAGGTGCACCGATATACCTATGTGTGTGTGTATGTG
CATATATTGTGGGTGCTGTGATGGTATCCGGGTCTGCACGTTCCGCCATT
ACATCGTTTTTCATGTTTACCTGCCGTCCAAGTATAGGCAACGAGGGTTC
TCAGAGCTGTCCGGACGTTGTCGGGAGTGCCAACGGCCGCCGTAGCTCAT
GTTGTGTGGCATGTTCTCTCTCTTCTTTCCGTTCGATGACCATCTGCTTG
GCATGTTTGCTCTTCCTTCTCTGCGCTACCGTACGCTGGCATCTACTTTG
CTGCATTTGATTTTTGCGCCCAAGCATTTTACGCTAAGCAACGAGCGCCC
CCAGAGGTGTCCGCACACCGTCGGGAGTGCCAACTGTGCGGCTGTAGTAC
ATGTTTGGGTCGCGTGCTCTTCAGCACATGTTTGCGTCGCGTGCTCTTTT
TTTCGTGAGTCAACTAGTGTTCTCAGACGTCTGTACGTTGCTGGGAGTGT
CAACGGCGGCCGAGGTACATACATATGTTGTGTGGCATGCTCTTTCCGTT
CGATGACACTCTGTTTTGCTTTTCTGCCTGTCGTCCAAGTTTGTTTGCGC
AATCAACACACGATAGTGCAACGAGCGTCCCCAGAGGTGTCCGTACACCG
TCGGGAGTGCCAACTGTGCGGCTGTAGTACATGTTTGCGTCGCGTGGTCC
TTTTTTCTTTCACTGTTATTTTCATTCCAGGGCCATCTGCGTAGTAGGGC
CATCTGCGTGGCATGTACGCCTGCCATCCAAGTTTATCATCATACAGAGA
GTCTCTAAAGTGGAAAGAAAATTGGTACGCGCGATGCCCCAGGCAGGGCA
ATCTATCGAACAATAAACAAGCCGATTGAGCACCGGAAAAACAAGCCGAA
CATGATAAACTCAACCAACCCAACTGCTGTCATTTCAGGGCTCGGCGCTG
CTTTTCTTCCCCTCCTGCGGGGGTGCGCCGGGCTGCCCGTTCGACATCCG
AACGCTGCACGCTGGAGAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2001:14583..20554+

>mRNA_L-elsbetiae_contig2001.6021.1 ID=mRNA_L-elsbetiae_contig2001.6021.1|Name=mRNA_L-elsbetiae_contig2001.6021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1638bp|location=Sequence derived from alignment at L-elsbetiae_contig2001:14583..20554+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGTCGACGTGTTTGATCTCCCACCCAGAGGCATCCCCGCGAGCGA
GCGCGGCCAGGAGCAGGCGCTACCATCCCAGGTCCTCGAGTGCATACGCA
GCCGGCACGGTCTTGAAGAGTTTGCCGGCGGTCATCTGCTTCTCGATCCC
GAGTACGGACCTGCTGAGGCTGCGGCGTCTGGCGGTACTGCTGTCTCGGA
GGAGGATGACGAGGGGAGAGGCTTGCTGTTCCCAGATGGGAGTCGACGTG
TTTGATCTCCCACCCAGAGGCATCCCCGCGAGCGAGCGCGGCCAGGAGCA
GGCGCTACCATCCCAGGTCCTCGAGTGCATACGCAGCCGGCACGGTCTTG
AAGAGTTTGCCGGCGGTCATCTGCTTCTCGATCCCGAGTACGGACCTGCT
GAGGCTGCGGCGTCTGGCGGTACTGCTGTCTCGGAGGAGGATGACGAGGG
GAGAGGCTTGCTGTTCCCAGGGTTGCGGCTCCTCCATGCCGAGCCGCCCG
TTATCGGCGTGGATGATTTCTTCACCCCTGAGGAGTGCGACGAGTACATC
TCCAGGTCGGTGTCTCCACCACCTCCTGTCCCAGCGTCGGGGGTTGCTAA
GGAGGGGGAGGTGGGGCCGCATATGCAGCGTAGTGCTACGCTGGGTGCGG
ACGTGGATGCCGTAGCGCAGGGTTGCGGCTCCTCCATGCCGAGCCGCCCG
TTATCGGCGTGGATGATTTCTTCACCCCTGAGGAGTGCGACGAGTACATC
TCCAGGTCGGTGTCTCCACCACCTCCTGTCCCAGCGTCGGGGGTTGCTAA
GGAGGGGGAGGTGGGGCCGCATATGCAGCGTAGTGCTACGCTGGGTGCGG
ACGTGGATGCCGTAGCGCAGCGCACGTCCACAACCTGGTTCCACCGCTTT
TCGGCGGTGACTGAGCTGATGGCCAAGGCGTCCGCGCTCGTGGGAGTTCC
GTTCGAGGAGGGGCGTTGGGAAGAGGCGCAGACGCGCACGTCCACAACCT
GGTTCCACCGCTTTTCGGCGGTGACTGAGCTGATGGCCAAGGCGTCCGCG
CTCGTGGGAGTTCCGTTCGAGGAGGGGCGTTGGGAAGAGGCGCAGACGGT
CCGATACAGACCAGGAGAGAAGTTCACCTGGCACCTGGACGCCCTCCCCC
CGACGCCGGAGTTAGCCTCGAAGGGGGGTCAGAGGATCGCGACGCTGCTG
GTGTACCTCACCGAAGTGCCCGATGGGGACGGCGGAGCCACGGCCTTTCG
GGATCTGGGCCCACTTCGTGTCCGCCCCCGCAAGGTCCGATACAGACCAG
GAGAGAAGTTCACCTGGCACCTGGACGCCCTCCCCCCGACGCCGGAGTTA
GCCTCGAAGGGGGGTCAGAGGATCGCGACGCTGCTGGTGTACCTCACCGA
AGTGCCCGATGGGGACGGCGGAGCCACGGCCTTTCGGGATCTGGGCCCAC
TTCGTGTCCGCCCCCGCAAGGGCTCGGCGCTGCTTTTCTTCCCCTCCTGC
GGGGGTGCGCCGGGCTGCCCGTTCGACATCCGAACGCTGCACGCTGGAGA
GGTGGGCTCGGCGCTGCTTTTCTTCCCCTCCTGCGGGGGTGCGCCGGGCT
GCCCGTTCGACATCCGAACGCTGCACGCTGGAGAGGTG
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