mRNA_L-elsbetiae_contig2001.6019.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2001.6019.1
Unique NamemRNA_L-elsbetiae_contig2001.6019.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2001.6019.1 vs. uniprot
Match: A0A6H5J913_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J913_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.100e-6
Identity = 27/56 (48.21%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:   34 RKCSHHGCPTWPSFSVAGNGKVEFCRDHAKDGIVSVAKGGCTHPGCTKRPSFGKAG 201
            R C    C TWPS+      K EFC+ HAK G+++V    C+HPGC K  SFGK G
Sbjct:  226 RSCQEPECTTWPSYGARLK-KAEFCKRHAKQGMINVVTRKCSHPGCIKSASFGKHG 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2001.6019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J913_9PHAE1.100e-648.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2001contigL-elsbetiae_contig2001:6078..8482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1841
Cds size1035
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2001.6019.1prot_L-elsbetiae_contig2001.6019.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2001 6318..7916 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.2289023-UTR-L-elsbetiae_contig2001:6077..63171622815830.2289023-UTR-L-elsbetiae_contig2001:6077..6317Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2001 6078..6317 +
1691683131.282348-UTR-L-elsbetiae_contig2001:6077..63171691683131.282348-UTR-L-elsbetiae_contig2001:6077..6317Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2001 6078..6317 +
1622815830.265043-UTR-L-elsbetiae_contig2001:7916..84821622815830.265043-UTR-L-elsbetiae_contig2001:7916..8482Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2001 7917..8482 +
1691683131.3082235-UTR-L-elsbetiae_contig2001:7916..84821691683131.3082235-UTR-L-elsbetiae_contig2001:7916..8482Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2001 7917..8482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.2414844-CDS-L-elsbetiae_contig2001:6317..73371622815830.2414844-CDS-L-elsbetiae_contig2001:6317..7337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 6318..7337 +
1691683131.2914164-CDS-L-elsbetiae_contig2001:6317..73371691683131.2914164-CDS-L-elsbetiae_contig2001:6317..7337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 6318..7337 +
1622815830.255007-CDS-L-elsbetiae_contig2001:7901..79161622815830.255007-CDS-L-elsbetiae_contig2001:7901..7916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 7902..7916 +
1691683131.2999036-CDS-L-elsbetiae_contig2001:7901..79161691683131.2999036-CDS-L-elsbetiae_contig2001:7901..7916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2001 7902..7916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2001.6019.1

>prot_L-elsbetiae_contig2001.6019.1 ID=prot_L-elsbetiae_contig2001.6019.1|Name=mRNA_L-elsbetiae_contig2001.6019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=345bp
MVNVKKKRCRYPGCTKEPFFGKDGSKAEYCRDHAKDGIVNLAKGRCTHPG
CTKWPSFGKDGSKTDYCRDHTKDGMVDVVSKRCTHPGCTKRPSFGKAGGK
TEYCRDHAKDGMVDAVSKRCTYPGCTKVPSFGKDGSKREYCRGHAKDGME
NVKDKMCAHPGCTTHPRYGKAGSKPEYCRGHAKDGMENVKDKMCAHLRCT
TTAHCGEEGKFCARHAGQDIMLISPTKRRSSGDGNNSGRPESVSAGARGG
GSARRASPGGRRSSQSHSPALAEISSSTSLKTKKRAAEFGDLRPVRVKRE
RVDSNHEMEEDQYMAWSELDGVVKAEDMELPCKVERAELQASPR*
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mRNA from alignment at L-elsbetiae_contig2001:6078..8482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2001.6019.1 ID=mRNA_L-elsbetiae_contig2001.6019.1|Name=mRNA_L-elsbetiae_contig2001.6019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2405bp|location=Sequence derived from alignment at L-elsbetiae_contig2001:6078..8482+ (Laminarionema elsbetiae ELsaHSoW15)
TCTTGGATAGTAGACTATAGAACAAAGATTCCTCGGAAGTGTTCACATCA
TGGCTGCCCCACTTGGCCGTCGTTCAGCGTGGCCGGCAACGGAAAGGTTG
AGTTCTGCCGTGACCATGCGAAGGACGGGATAGTGAGCGTCGCCAAGGGG
GGATGCACACATCCAGGTTGCACCAAGCGACCGTCCTTCGGCAAGGCCGG
GGGCAAGACGGAGTATTGCCGTGACCATGCCAAGGACAGGATGGTGAACG
TGAAGAAAAAAAGATGCAGATATCCAGGTTGCACCAAGGAGCCGTTCTTC
GGTAAGGATGGCAGCAAGGCCGAGTACTGCCGTGACCATGCGAAGGACGG
GATAGTGAACCTCGCCAAGGGGAGATGCACACATCCAGGCTGCACTAAGT
GGCCGTCCTTCGGCAAGGATGGCAGCAAGACCGACTACTGCCGTGACCAT
ACAAAGGACGGGATGGTGGACGTCGTCAGCAAGAGATGCACGCATCCAGG
TTGCACCAAGCGGCCGTCCTTCGGCAAGGCCGGTGGCAAGACGGAGTACT
GCCGTGACCATGCGAAGGACGGGATGGTGGACGCCGTCAGCAAGAGATGC
ACATATCCAGGTTGCACCAAGGTGCCGTCCTTCGGCAAGGATGGCAGCAA
GCGAGAGTACTGCCGTGGCCATGCAAAGGACGGGATGGAGAACGTGAAGG
ATAAGATGTGCGCCCATCCGGGATGCACCACGCACCCGAGATACGGCAAG
GCTGGCAGTAAGCCAGAGTACTGCCGTGGCCATGCGAAGGACGGGATGGA
GAACGTGAAGGATAAGATGTGCGCTCATCTCAGGTGCACCACGACGGCCC
ACTGCGGCGAGGAGGGGAAGTTCTGTGCACGGCATGCAGGGCAAGACATC
ATGCTTATCTCTCCTACTAAGCGCAGATCTAGCGGTGACGGCAATAATAG
TGGCAGGCCTGAGAGTGTTAGCGCGGGAGCAAGAGGGGGTGGTTCAGCGC
GCCGTGCTAGCCCCGGTGGCAGGAGGAGCAGCCAATCCCATTCGCCTGCA
CTGGCAGAGATTTCTTCCAGCACAAGCCTGAAGACGAAGAAGCGAGCCGC
TGAATTTGGGGACCTACGGCCAGTTCGAGTGAAGAGAGAGCGCGTTGACA
GCAATCACGAGATGGAAGAGGACCAATACATGGCATGGTCGGAGCTGGAT
GGCGTAGTGAAGGCAGAAGACATGGAGTTGCCGTGTAAGGTAGAACGTGC
TGAGCTCCAGGTGCGTTCGGGGTTTTTGCTTCGGCACCCCGTGCATTTCC
CGTCGCGGGTACTTGAAGTGGATAGAGACAGAGGGGATTAGCTGTGGGGA
AATAGGAGCGGTATTGCTGAACGACGACCGAGGTTTGGCCGTGCAGGCTC
GATTTCGTACCTCGATCTGCATCTGTTGACACACGTATTTTGAAAGCATA
CAGAGGGTGTCGTGTTGTATCGTGAAGATGACCAAGGGCGCTAAATATTC
CACAGCAGTGCATCAGTGTTAGTTTGTCAAGAGTGTTTGAATCCCTCGTT
CGTCCACGTGCACCAAAGCCTCCCAGTACGGTGTGTTCTATTTCAACGTG
TGTTACCTTGCGCCGTTAGAGTGGGTTTCTCTCAATCTCGTCTGCTCGGA
AAAAACACGGCTACTTGGTATTTATATATACGTAGCAATGGTTTCCCGGG
GGTTAGGTCCGCCTTTTTCCTGAAGTTCTCGTTCGCCTTAGCGCTTATAG
CGGGCGCCCCCACGTGCTCGTCTGTTTTATGTATGTGCTCGCCTGCCCAT
TGCGCCCCCCTTCGATCATCCCAGGCAAGTCCGAGGTAAAGAGGAGAAAC
ACTGCAGGAGGGTAGGGGCGAGGCTGCTGATATCGCAGAAGTGGGAGTCG
CTGCACACAGTCAGTCGGAAGGAAGGCTGCATTCGTGAGCTCAGAGCTAG
CTGAGATTGCGGGAGTAGCAACGGCAGTGAGCTGTCGGTCTGGTGGGTCG
TAGCGATATGGGTGCGACACGGCCGCAGATTCGGGTATGTATGCGTTCTC
GTGTGTCGGGAGAGTTTGAATCAGGCTACAGGGTGTTCATTAAAACACAC
ACTCACGTTTTTTGCTACTTTTCCCCGTTATTTGCCGGCCAAAAGTGGCG
CCCATGGAGATCATTGGCAGTCCATTACATGTGTACCATACATAGCAGCC
TGACATTTTTGTGAAGGGGTTCCCGGTGCATTTTGGTTGGCTTGACCGAC
CGCTTTGTGCGTGAAATGGTATTTATCTGTGTGCACCCTTGGGAGCACGG
CTGCGAGCTGCTGGCGCTGTAGCTAAGAAGGCTGTCGCACATCGTGTGGC
CGAGTTACGTAGGAATCGTTGGAGCCGATTAGGAGAAAATCAAGACTGTG
TCCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2001:6078..8482+

>mRNA_L-elsbetiae_contig2001.6019.1 ID=mRNA_L-elsbetiae_contig2001.6019.1|Name=mRNA_L-elsbetiae_contig2001.6019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2070bp|location=Sequence derived from alignment at L-elsbetiae_contig2001:6078..8482+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACGTGAAGAAAAAAAGATGCAGATATCCAGGTTGCACCAAGGA
GCCGTTCTTCGGTAAGGATGGCAGCAAGGCCGAGTACTGCCGTGACCATG
CGAAGGACGGGATAGTGAACCTCGCCAAGGGGAGATGCACACATCCAGGC
TGCACTAAGTGGCCGTCCTTCGGCAAGGATGGCAGCAAGACCGACTACTG
CCGTGACCATACAAAGGACGGGATGGTGGACGTCGTCAGCAAGAGATGCA
CGCATCCAGGTTGCACCAAGCGGCCGTCCTTCGGCAAGGCCGGTGGCAAG
ACGGAGTACTGCCGTGACCATGCGAAGGACGGGATGGTGGACGCCGTCAG
CAAGAGATGCACATATCCAGGTTGCACCAAGGTGCCGTCCTTCGGCAAGG
ATGGCAGCAAGCGAGAGTACTGCCGTGGCCATGCAAAGGACGGGATGGAG
AACGTGAAGGATAAGATGTGCGCCCATCCGGGATGCACCACGCACCCGAG
ATACGGCAAGGCTGGCAGTAAGCCAGAGTACTGCCGTGGCCATGCGAAGG
ACGGGATGGAGAACGTGAAGGATAAGATGTGCGCTCATCTCAGGTGCACC
ACGACGGCCCACTGCGGCGAGGAGGGGAAGTTCTGTGCACGGCATGCAGG
GCAAGACATCATGCTTATCTCTCCTACTAAGCGCAGATCTAGCGGTGACG
GCAATAATAGTGGCAGGCCTGAGAGTGTTAGCGCGGGAGCAAGAGGGGGT
GGTTCAGCGCGCCGTGCTAGCCCCGGTGGCAGGAGGAGCAGCCAATCCCA
TTCGCCTGCACTGGCAGAGATTTCTTCCAGCACAAGCCTGAAGACGAAGA
AGCGAGCCGCTGAATTTGGGGACCTACGGCCAGTTCGAGTGAAGAGAGAG
CGCGTTGACAGCAATCACGAGATGGAAGAGGACCAATACATGGCATGGTC
GGAGCTGGATGGCGTAGTGAAGGCAGAAGACATGGAGTTGCCGTGTAAGG
TAGAACGTGCTGAGCTCCAGATGGTGAACGTGAAGAAAAAAAGATGCAGA
TATCCAGGTTGCACCAAGGAGCCGTTCTTCGGTAAGGATGGCAGCAAGGC
CGAGTACTGCCGTGACCATGCGAAGGACGGGATAGTGAACCTCGCCAAGG
GGAGATGCACACATCCAGGCTGCACTAAGTGGCCGTCCTTCGGCAAGGAT
GGCAGCAAGACCGACTACTGCCGTGACCATACAAAGGACGGGATGGTGGA
CGTCGTCAGCAAGAGATGCACGCATCCAGGTTGCACCAAGCGGCCGTCCT
TCGGCAAGGCCGGTGGCAAGACGGAGTACTGCCGTGACCATGCGAAGGAC
GGGATGGTGGACGCCGTCAGCAAGAGATGCACATATCCAGGTTGCACCAA
GGTGCCGTCCTTCGGCAAGGATGGCAGCAAGCGAGAGTACTGCCGTGGCC
ATGCAAAGGACGGGATGGAGAACGTGAAGGATAAGATGTGCGCCCATCCG
GGATGCACCACGCACCCGAGATACGGCAAGGCTGGCAGTAAGCCAGAGTA
CTGCCGTGGCCATGCGAAGGACGGGATGGAGAACGTGAAGGATAAGATGT
GCGCTCATCTCAGGTGCACCACGACGGCCCACTGCGGCGAGGAGGGGAAG
TTCTGTGCACGGCATGCAGGGCAAGACATCATGCTTATCTCTCCTACTAA
GCGCAGATCTAGCGGTGACGGCAATAATAGTGGCAGGCCTGAGAGTGTTA
GCGCGGGAGCAAGAGGGGGTGGTTCAGCGCGCCGTGCTAGCCCCGGTGGC
AGGAGGAGCAGCCAATCCCATTCGCCTGCACTGGCAGAGATTTCTTCCAG
CACAAGCCTGAAGACGAAGAAGCGAGCCGCTGAATTTGGGGACCTACGGC
CAGTTCGAGTGAAGAGAGAGCGCGTTGACAGCAATCACGAGATGGAAGAG
GACCAATACATGGCATGGTCGGAGCTGGATGGCGTAGTGAAGGCAGAAGA
CATGGAGTTGCCGTGTAAGGTAGAACGTGCTGAGCTCCAGGCAAGTCCGA
GGTAAGCAAGTCCGAGGTAA
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