mRNA_L-elsbetiae_contig2000.6018.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2000.6018.1
Unique NamemRNA_L-elsbetiae_contig2000.6018.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2000.6018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2000contigL-elsbetiae_contig2000:19367..22291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-12_008680.1
Exons3
Model size405
Cds size405
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2000.6018.1prot_L-elsbetiae_contig2000.6018.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2000 19367..22291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.0227225-CDS-L-elsbetiae_contig2000:19366..194831622815830.0227225-CDS-L-elsbetiae_contig2000:19366..19483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2000 19367..19483 +
1691683131.1263433-CDS-L-elsbetiae_contig2000:19366..194831691683131.1263433-CDS-L-elsbetiae_contig2000:19366..19483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2000 19367..19483 +
1622815830.032593-CDS-L-elsbetiae_contig2000:20480..206121622815830.032593-CDS-L-elsbetiae_contig2000:20480..20612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2000 20481..20612 +
1691683131.1360488-CDS-L-elsbetiae_contig2000:20480..206121691683131.1360488-CDS-L-elsbetiae_contig2000:20480..20612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2000 20481..20612 +
1622815830.0439029-CDS-L-elsbetiae_contig2000:22135..222911622815830.0439029-CDS-L-elsbetiae_contig2000:22135..22291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2000 22136..22291 +
1691683131.146027-CDS-L-elsbetiae_contig2000:22135..222911691683131.146027-CDS-L-elsbetiae_contig2000:22135..22291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2000 22136..22291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2000.6018.1

>prot_L-elsbetiae_contig2000.6018.1 ID=prot_L-elsbetiae_contig2000.6018.1|Name=mRNA_L-elsbetiae_contig2000.6018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
YDLAGPLTDVTWPRRLLRLSFGDAFNGSIEGVRWPPSLQMIFLGHSFNQP
VEEVDWPASLKQLRFGDSFNQEVERVRWPGGLEQLVFGNKFNRPIVRMKE
WPSSLLLLSFGYAFNQSVIGVALPPRLEVCMQDT*
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mRNA from alignment at L-elsbetiae_contig2000:19367..22291+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2000.6018.1 ID=mRNA_L-elsbetiae_contig2000.6018.1|Name=mRNA_L-elsbetiae_contig2000.6018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2925bp|location=Sequence derived from alignment at L-elsbetiae_contig2000:19367..22291+ (Laminarionema elsbetiae ELsaHSoW15)
TACGACCTCGCGGGCCCGTTGACGGACGTCACGTGGCCCCGAAGGCTTCT
CCGGCTGTCGTTCGGGGACGCTTTTAACGGCAGCATCGAGGGCGTGCGGT
GGCCGCCATCCCTGCAGGTTCGGCCTTTCCCCTTGTTGCGAGCGGGACTG
ACTAGCAAAGGGCAGACGCGTGAGGGTCTAGTGCAAGGAAGGGTGTGTGT
TAAACTCTTTTCATGTTGTATGTCTTGTGTTACATATGTCGGAAATGTCA
GCGGTCTACGTACGTCCTGTGAAAAATGAAAAGAGGCGTTCAGGGGGGAT
GCTGCTGTTGTAGAGTAGACACACTACCCATCCCTTGCTGTCCCAAGCTG
CAGGTCCCCATTCCGCAATCCGTTTAGTTCGCTGGTATTTATCGAGTTCG
GGAGGGGGTAATTCCGCAATTTATCTAGTCCGCTGGTTTTTATCTAGTTG
GGGGGTGTTATTTAACGTTTGGGTATGGTATCTTCCGTACGACAGAGTAG
TATGTGTAGGACTTTTTTTGCTACTCTCAGCGAGAACCATATCACATCGC
CGCACCTACCTATGTAATTACTGATTCACTGCTGGAGTCTCAATCTCCTG
TGGAGGGTTTCATCTTGTGATGTACTTCTTATTTATTTTGGGTTACATCT
TGTGTTCATTTGGGTTTCATCTTGTAATATATTTATTTATTTTCGGAGGA
AATGATGGCTACATGTTTCTACTTCATGTAAATAGATACAAGACGAAAAT
TGCTACCACATAGCTTTGTATGTACCTAAATGGAACTTCATGTGTGCGTA
CAACGTATTGTAACCTGTGGGTGTGTGTGTTGTCTTCACATTAAAAACCG
TTCCGATCTCTCTATCCGGTACACCTCCACGAGTCCGCACTAATCCAATA
CTGACGCGGTCGGTGCCCGTGGTCACCGCATAACTTACCCTACAAAAAAA
GTCTATGAATAGACTACTAAAAAATAAATGAAAAACTGCTTGCCACAAAC
TAGCCTCGCGGACGACGAAGACTCCGTCGCTGTTGCCCCCCTTGCTTGTG
CCGTCTGTGCTTCCGCCGGGCACCCGATGAACGCTCATGACTTGAACCGC
TGTCCCCACGCCAGATGATATTCTTGGGCCATAGCTTTAACCAGCCGGTG
GAAGAGGTTGACTGGCCTGCGTCGCTGAAGCAGTTAAGGTTTGGCGACAG
CTTCAACCAGGAGGTGGAGCGGGTGCGCTGGCCTGGTGGCCTCGAGGTGA
GAGGGAAATGCATGGGAGAGAGAAGGGGTGGACCAATCACGTTGCTCGGG
TCCGGTGGGAGGGAGAGGAATAGACCAATCACGTTGCTCAGATCCGATGG
GAAGAGAGGAGCTTTGCTCAGAACCGATCGGAAGAGAGGATGACCGATCA
CGTTGCTCACGTCTGATGGGAGGGAGGGATGGACCAATCACGTTGCTCAG
CCCCGATGGGAGAGAAGGGAATGGACCAATCACGTTGCTCGGGTCCGGTG
GGAGGGAGAGGAATGGACCACTTAAGTTGCTCGGGTCCGGTGGGAGGGAG
AGGAATGGACCAATCACGTTGCTCAGATCCGATGGGAGAGAGAGGAATGG
ACCAATCACGTTGCTCAGATCCCATGTTAGAGAGGGATGGGCCAACTGAC
GTTGCTCGGGTCCGATGGGAGAGAGAGGAATGGACCAATGACGTTGCTCA
GATCTGATGGGAGAGAGAGGAATGGACCAATCACGTTGCTCAGATCCTAC
GAGAAAGCCAATCATACTTGATGCTGCCATGGTATTACAGGAGCTCCCAA
GTCGTCTGTATGCTGTACGGGGCGACACACGAGTAAGGCGTGAGGTTAAA
AAAATATGTTTTCTCAGGCAGGAACCAATGTGCTTTCTTACTTGTAGGTG
GTCTTGGGCCGCTAAGCCCCGCGTTGTGGTGTTTGTTGCTTCACAGCCTT
GTGCCTTCGGCTCCGCCGCCCCCCTTTCTTCTCTATCTCCGCACCCCCCC
CCCCCCCCCCCCCCCCCCCCTCCCCCCTTTCTCCCCTCCCCCCCCCCCCC
CCCCCCCCCCCCCCACCTCCCTCCACGCCACCCCACACGACCACACNNNN
NNNNNNTGTGGCGCAAAGCCCCCCGTTTGGTGGTTTTTTGTTTCCCCCCC
CTGTGCCCTCGCCCCCCCCCCCCCCCTTTCTTCTCCTCCCCCCCCCCCCC
CCCCCCCCCCCCTCCCATCATTGGCATATTCGTCGTCTGCCCCACTGGTC
CCCTTCCTCCACTACGACTAGCTAGACGACTAGCTAGACGATTCAACCGG
GGTCACACAGGAGGGGGGGGTGAATATATTCGTATTTATCAATTTTCACG
GGTTGTACTTTTTATTTTTCGTGGCCTGCCTGCCTGCCTGCCTGCTCGCT
CGCCCTCGGCATCATTATCATCACTACTTTCTGTGGTGCATCATGATCAT
CGTCATCATCATCATCATCATGATCATCGTCATCATCACTCTGGTGCATA
ACCATCATCGTCATCGCCGTAATCATCATGCATCACTCTATCACCCTCCG
TGGTGCATAACAATCGACATCATCATCGTCGTCATGATGATGATGATGAT
CATCATCATCACCACTCTGGTGCATAATCATCATCGTGATTATCATCATC
ATCGTCATCACCACCATCATCGCCATCATCATCATCGTCATCATCATCAT
AATCATCATCGTCGTCATCATCATCATCCACTACTCCCACCACTGTTGGC
ACGACAACCAATTGTTTAGCAACTTGTGTTCGGCAACAAATTCAACCGGC
CGATCGTACGAATGAAGGAGTGGCCGTCGTCCCTGCTCCTGCTGTCGTTC
GGTTATGCCTTCAACCAAAGCGTCATCGGAGTCGCTCTCCCGCCCCGGCT
CGAGGTATGCATGCAGGATACATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2000:19367..22291+

>mRNA_L-elsbetiae_contig2000.6018.1 ID=mRNA_L-elsbetiae_contig2000.6018.1|Name=mRNA_L-elsbetiae_contig2000.6018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig2000:19367..22291+ (Laminarionema elsbetiae ELsaHSoW15)
TACGACCTCGCGGGCCCGTTGACGGACGTCACGTGGCCCCGAAGGCTTCT
CCGGCTGTCGTTCGGGGACGCTTTTAACGGCAGCATCGAGGGCGTGCGGT
GGCCGCCATCCCTGCAGTACGACCTCGCGGGCCCGTTGACGGACGTCACG
TGGCCCCGAAGGCTTCTCCGGCTGTCGTTCGGGGACGCTTTTAACGGCAG
CATCGAGGGCGTGCGGTGGCCGCCATCCCTGCAGATGATATTCTTGGGCC
ATAGCTTTAACCAGCCGGTGGAAGAGGTTGACTGGCCTGCGTCGCTGAAG
CAGTTAAGGTTTGGCGACAGCTTCAACCAGGAGGTGGAGCGGGTGCGCTG
GCCTGGTGGCCTCGAGATGATATTCTTGGGCCATAGCTTTAACCAGCCGG
TGGAAGAGGTTGACTGGCCTGCGTCGCTGAAGCAGTTAAGGTTTGGCGAC
AGCTTCAACCAGGAGGTGGAGCGGGTGCGCTGGCCTGGTGGCCTCGAGCA
ACTTGTGTTCGGCAACAAATTCAACCGGCCGATCGTACGAATGAAGGAGT
GGCCGTCGTCCCTGCTCCTGCTGTCGTTCGGTTATGCCTTCAACCAAAGC
GTCATCGGAGTCGCTCTCCCGCCCCGGCTCGAGGTATGCATGCAGGATAC
ATAGCAACTTGTGTTCGGCAACAAATTCAACCGGCCGATCGTACGAATGA
AGGAGTGGCCGTCGTCCCTGCTCCTGCTGTCGTTCGGTTATGCCTTCAAC
CAAAGCGTCATCGGAGTCGCTCTCCCGCCCCGGCTCGAGGTATGCATGCA
GGATACATAG
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