mRNA_L-elsbetiae_contig200.6015.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig200.6015.1
Unique NamemRNA_L-elsbetiae_contig200.6015.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig200.6015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig200contigL-elsbetiae_contig200:22066..24221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size332
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig200.6015.1prot_L-elsbetiae_contig200.6015.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig200 22191..24221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815829.1989-UTR-L-elsbetiae_contig200:22065..221901622815829.1989-UTR-L-elsbetiae_contig200:22065..22190Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig200 22066..22190 +
1691683130.487627-UTR-L-elsbetiae_contig200:22065..221901691683130.487627-UTR-L-elsbetiae_contig200:22065..22190Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig200 22066..22190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815829.2122278-CDS-L-elsbetiae_contig200:22190..223501622815829.2122278-CDS-L-elsbetiae_contig200:22190..22350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 22191..22350 +
1691683130.5076687-CDS-L-elsbetiae_contig200:22190..223501691683130.5076687-CDS-L-elsbetiae_contig200:22190..22350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 22191..22350 +
1622815829.2236207-CDS-L-elsbetiae_contig200:24174..242211622815829.2236207-CDS-L-elsbetiae_contig200:24174..24221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 24175..24221 +
1691683130.520088-CDS-L-elsbetiae_contig200:24174..242211691683130.520088-CDS-L-elsbetiae_contig200:24174..24221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig200 24175..24221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig200.6015.1

>prot_L-elsbetiae_contig200.6015.1 ID=prot_L-elsbetiae_contig200.6015.1|Name=mRNA_L-elsbetiae_contig200.6015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
MASRTASRTSYLALVLRDHIHPESVGARVASYGRNEQQHSIFAGPSERKH
RNAGRLCGFHRVISGICHK
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mRNA from alignment at L-elsbetiae_contig200:22066..24221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig200.6015.1 ID=mRNA_L-elsbetiae_contig200.6015.1|Name=mRNA_L-elsbetiae_contig200.6015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2156bp|location=Sequence derived from alignment at L-elsbetiae_contig200:22066..24221+ (Laminarionema elsbetiae ELsaHSoW15)
TGCAGCATCTGGTATAGTCTATACCTTAAACATGTCCTTGATAGATTTGT
AGTACGCGTAAGAAAGCTCGAAGTGCGTCCTCAAAAATCGGTACCTAAAC
TAAGCTAACTCTTGTTCTTTTCAAGATGGCATCCAGAACAGCCAGCCGCA
CATCGTACCTTGCTTTGGTGCTACGTGACCACATCCATCCAGAGAGTGTA
GGGGCCAGAGTCGCGTCGTACGGCAGGAACGAACAACAGCATTCGATATT
TGCAGGGCCATCGGAAAGGAAACATCGGAATGCAGGTAAGCCAAATAAAT
TCAGCATCTCTTATACTCCGTATACTTTAAATATGTCCATTGATGTATTT
GTGGCACCACAAAATAAGAAGGCACACCTTCGAAATACGTCCCCGAAAAT
CGGCCTACCTAAACCAAGCTGAACCAACTCTTGTTCGTTTCAAGATATTT
CAAGATATCATCCAACTCAGTTGCTCGGCACAATGCACCCGACGGAAAAA
CACCACAACAGCCAGCCGCACATCGTACCTGGCTTTGGCGCTACGTGACC
ATATCCATCCAGAGAGTGTAGGGGCGGGAGTCACGCCATACGGCAGGAAC
GCGACAGCATTAGATAGGGCCATCGGAAAGGAACAGACAACGGAATGCAG
ATAAGCCAAGTAAAATTAGCATCTGTTCTGTTTTTAGTTTATACCTTTAA
CATGGACATTCATGAATTTGTAGCACGCGTACAAATAAGAAAGCATGCCT
TCGAAGTACGTCGTTAAAAATCGGTAACTAAACCAAGCTAAACATCCTCA
AAAATCGGCACCTAAACCAAGCTAAACCAAAGGCCGGGGAGAGGACTATG
ACCGGGGAGGGGGATTCGAACCTCCGTGTTTGCACCAACGAAGCGAACGC
TATTCTTAGCAGTTTATGCTGCGTTGCCTGGAAAACACGTACACACCGTT
GTCGAGTCGGCACGGAGCAGCTCCGGTCTTGTCACAAAAGTCGTCGCTGC
TAAGGATGCCTTGTGGTCCGCCGATGCAGCAGTTTCCGGGCCCCCCGGGG
AAGCCGAAGCAGCCGCTACCCCCGCACTCTCCACACTTACTGTCGCAACA
CACCCTGCCGTCGCCGGACGGGATGCCCTCAATGTCGCCGGGGCATGTCT
GGCCTAGTGTCCAAACAAAATGCGGACGGCGAGCATTATTTGGTATCATC
GGAGGTTTGTTGCCCCCACATGCTGCGACATGCTGCAATGTTTCCGTGGC
GGTGTTTTACAGAATTTTTAGGCGATGGCCTACAGGGTACACTGCTGTAC
TGCTGCGCAGGAAGTTTATTGTTGAGATAAAGGTCGTTTCAAGCAAAACA
CATGCTACGAAGAAAGCGCTCTCACGTTTCCTCTCATGTTTCCTCGCGGG
CACCAGAGGAGTAACCGGGGCAGGTGTGGGGCCTCCTGTGAACAAGCAAC
AGCGCGTCGTTCACCGTATTGGGGAAATGAAGTCAGTCGGAAAAAAACAC
GCCAGTAGAGAGGGCAAGCCTTTGAGCTGTCGGAAAAAACACACACGCAC
CAGTAGAGAGGGCGAACAGACCAACTCATTGGAATGATGTTCTTTTTAGT
GCCCAGCGGTCGACCTCTCGTCTCCCCTTACCGACCTTGCCCTCGTGTTG
ACTACATACATAACTACAGTAGTAGTCTAGTGCATCATTTGACTGTTCAA
ACCAAAACACTCACCGATGATGCACGGGGCTGACACGGTCGCGCTGCATA
GTTTGCCTTTGCGAGCGATGGAGTTGATGCAACAGAAATCCTCGCCAAGA
CCCGCGGCCTTCCCACCCCCGAGGGTATGGCATTCGCGGCCTCCGCAACC
TCCACAAGCGAGAGGGCAACACCTGTGATTTGCACACGCGGCAAGAAAAA
TTGAGACAAAACGCAACTTCTCTTGAGCATCGAGCAGTGCGCGGGAGGGG
TTCCAATGCAAAACGAGTCCAGATACTCCATATTTACCAACGAAGACAGA
AAAAATGTTTAGAATAACTCAATAATTTACCATTGTTTAGAATAACTCAA
TAACTTACACGTCGTCGTGCCTGCCACCTCTCCCGAAACCGGGGAGCCCG
TTGCTGCAGGTCGACTCTGTGGTTTTCATCGAGTAATTTCAGGCATTTGT
CACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig200:22066..24221+

>mRNA_L-elsbetiae_contig200.6015.1 ID=mRNA_L-elsbetiae_contig200.6015.1|Name=mRNA_L-elsbetiae_contig200.6015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig200:22066..24221+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCATCCAGAACAGCCAGCCGCACATCGTACCTTGCTTTGGTGCTACG
TGACCACATCCATCCAGAGAGTGTAGGGGCCAGAGTCGCGTCGTACGGCA
GGAACGAACAACAGCATTCGATATTTGCAGGGCCATCGGAAAGGAAACAT
CGGAATGCAGATGGCATCCAGAACAGCCAGCCGCACATCGTACCTTGCTT
TGGTGCTACGTGACCACATCCATCCAGAGAGTGTAGGGGCCAGAGTCGCG
TCGTACGGCAGGAACGAACAACAGCATTCGATATTTGCAGGGCCATCGGA
AAGGAAACATCGGAATGCAGGTCGACTCTGTGGTTTTCATCGAGTAATTT
CAGGCATTTGTCACAAGGTCGACTCTGTGGTTTTCATCGAGTAATTTCAG
GCATTTGTCACAAG
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