mRNA_L-elsbetiae_contig19998.5993.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19998.5993.1
Unique NamemRNA_L-elsbetiae_contig19998.5993.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19998.5993.1 vs. uniprot
Match: A0A6H5L7M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7M6_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.590e-39
Identity = 76/175 (43.43%), Postives = 92/175 (52.57%), Query Frame = 1 
Query:    1 MKCGHGSPSCNATCNPTGDLPITCNNKMTPHLHHAYDMVPVLFTVIPPHMAVDCGPHAGDGTQIPCAISIGTQA-------------------------------------LKELFLCDGEEFTLMDDAKKKQRARWLIDTDFIAAVEKKKWGQQGRWGYHVVALSNDAAVIDRL 414
            M+C  G+P CN+T NP  +LPI C NK+TPHLH  YDM+P LF  I PHMAVDCG H  DG QIP A+SIGT+                                      LK  F       ++     K  RA +++   FIAAVEKKKWG Q  WGYH+ ALSND  +I+RL
Sbjct:   13 MRCCLGTPECNSTSNPCAELPIACTNKITPHLHRDYDMIPKLFAAIQPHMAVDCGLHTKDGIQIPSAMSIGTKQNIAMYFYSFHRVCSSTPSISFAALFLHNATRGVPNGLLKRSFFVTVRNSSISTAMTKNVRASYILGITFIAAVEKKKWGHQNCWGYHIAALSNDVTIIERL 187
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BLAST of mRNA_L-elsbetiae_contig19998.5993.1 vs. uniprot
Match: A0A6H5KLW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 4.510e-20
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 MKCGHGSPSCNATCNPTGDLPITCNNKMTPHLHHAYDMVPVLFTVIPPHMAVDCGPHAGDGTQIPCAISIGTQALK 228
            MKCG G+P C+ATCN +  LP TC +K   H+HH YD++P LFTV+P H A D GP    G  I  A+SIGTQA K
Sbjct:    1 MKCGRGTPPCSATCNLSMGLPFTCGDKFGQHVHHDYDVIPTLFTVVPAHGAEDVGPSTTGGAIIGSALSIGTQAKK 76
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BLAST of mRNA_L-elsbetiae_contig19998.5993.1 vs. uniprot
Match: A0A6H5KSB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSB6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.560e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  244 DGEEFTLMDDAKKKQRARWLIDTDFIAAVEKKKWGQQGRWGYHVVALSNDAAVIDRL 414
            DGEEF    +  K   A +++DT FIAAVEKK W  Q RWGYH+VALSN+  +I+RL
Sbjct:   88 DGEEFIDRGNCDKNFHASYILDTTFIAAVEKKSWVHQNRWGYHIVALSNNVTIIERL 144
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BLAST of mRNA_L-elsbetiae_contig19998.5993.1 vs. uniprot
Match: A0A6H5K3I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.350e-9
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:  280 KKQRARWLIDTDFIAAVEKKKWGQQGRWGYHVVALSNDAAVIDRL 414
            K  RA +++ T FIAAVEKKKWG Q  WGYH+VALSND  +I+RL
Sbjct:  114 KNVRASYILGTTFIAAVEKKKWGHQNCWGYHIVALSNDVTIIERL 158
[Close]
BLAST of mRNA_L-elsbetiae_contig19998.5993.1 vs. uniprot
Match: A0A6H5K6D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D8_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.740e-9
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:  280 KKQRARWLIDTDFIAAVEKKKWGQQGRWGYHVVALSNDAAVIDRL 414
            K  RA +++ T FIAAVEKKKWG Q  WGYHVVALS+D  +I+RL
Sbjct:    3 KNVRASYILGTTFIAAVEKKKWGHQNCWGYHVVALSDDVTIIERL 47
[Close]
BLAST of mRNA_L-elsbetiae_contig19998.5993.1 vs. uniprot
Match: A0A6H5JWD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.550e-9
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  280 KKQRARWLIDTDFIAAVEKKKWGQQGRWGYHVVALSNDAAVIDRL 414
            K  RA +++   FIAAVEKKKWG Q  WGYH+VALSND  +I+RL
Sbjct:    3 KNVRASYILGITFIAAVEKKKWGHQNCWGYHIVALSNDVTIIERL 47
[Close]
BLAST of mRNA_L-elsbetiae_contig19998.5993.1 vs. uniprot
Match: A0A6H5JX79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX79_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.730e-9
Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:  214 TQALKELFLCDGEEFTLMDDAKKKQRARWLIDTDFIAAVEKKKWGQQGRWGYHVVALSNDAAVIDRL 414
            T+  K  F              K  RA +++ T  IAAVEKKKWG Q  WGYH+VALSN   +I+RL
Sbjct:   33 TRLFKRSFFVTVRNSLTSTTMTKNARASYIVGTTSIAAVEKKKWGHQNCWGYHIVALSNGVTIIERL 99
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19998.5993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L7M6_9PHAE1.590e-3943.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLW6_9PHAE4.510e-2055.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSB6_9PHAE1.560e-1156.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3I6_9PHAE1.350e-964.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6D8_9PHAE1.740e-964.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWD9_9PHAE2.550e-962.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX79_9PHAE7.730e-944.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19998contigL-elsbetiae_contig19998:1213..2264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size727
Cds size726
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.5904357-CDS-L-elsbetiae_contig19998:1212..17191622815825.5904357-CDS-L-elsbetiae_contig19998:1212..1719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19998 1213..1719 -
1691683127.6283996-CDS-L-elsbetiae_contig19998:1212..17191691683127.6283996-CDS-L-elsbetiae_contig19998:1212..1719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19998 1213..1719 -
1622815825.6023314-CDS-L-elsbetiae_contig19998:2045..22641622815825.6023314-CDS-L-elsbetiae_contig19998:2045..2264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19998 2046..2264 -
1691683127.6396465-CDS-L-elsbetiae_contig19998:2045..22641691683127.6396465-CDS-L-elsbetiae_contig19998:2045..2264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19998 2046..2264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19998.5993.1prot_L-elsbetiae_contig19998.5993.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19998 1213..2264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19998.5993.1

>prot_L-elsbetiae_contig19998.5993.1 ID=prot_L-elsbetiae_contig19998.5993.1|Name=mRNA_L-elsbetiae_contig19998.5993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=242bp
MKCGHGSPSCNATCNPTGDLPITCNNKMTPHLHHAYDMVPVLFTVIPPHM
AVDCGPHAGDGTQIPCAISIGTQALKELFLCDGEEFTLMDDAKKKQRARW
LIDTDFIAAVEKKKWGQQGRWGYHVVALSNDAAVIDRLNNANKSVKNTID
LSTADADGGASSNAAATRKKRSTRKRRQTSRSRNGKGKKRKVQPDPASAD
EESEHDDYDDGDDDFCPDAAEEEEEEEEEMVEDEEVDEDDGD
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mRNA from alignment at L-elsbetiae_contig19998:1213..2264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19998.5993.1 ID=mRNA_L-elsbetiae_contig19998.5993.1|Name=mRNA_L-elsbetiae_contig19998.5993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1052bp|location=Sequence derived from alignment at L-elsbetiae_contig19998:1213..2264- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTGCGGCCACGGCAGCCCCTCCTGCAACGCCACGTGCAACCCCAC
GGGTGATCTCCCGATTACTTGCAACAACAAGATGACTCCGCACTTGCACC
ATGCATATGACATGGTGCCCGTCCTGTTCACCGTCATACCGCCTCACATG
GCGGTTGATTGTGGACCGCACGCTGGAGACGGTACTCAAATCCCCTGTGC
CATCTCCATCGGCACCCAGGTATGTCATCTTCCGACTTCTACGAGTAACA
CCCTCACGCTGCTACGGTATTGACTGAAGTTGACATTCCCTTTCCCCCGT
ACTGTTTTAACACGACTTCAAGTACACGCCGTCTCCACCAACATTTTACC
GCCTCACTTACTGCGTTTTCCTGCCTCTACCTTCCCAAACGATTTCCTTC
CCCATGTGCCACATCCCGCATGCCTTCATTCATCACCACCTGCCCCGTTT
GATTTGCTGCGTCCGTTGCCTCATCGTCCCAAAATTGCCGCGGTGCTCCT
CACTATAATCCGGCACTCCTTTCCACCCTCCTCGCCCTTACACAGGCTCT
CAAGGAACTCTTCCTCTGTGACGGTGAGGAGTTCACCCTCATGGACGACG
CCAAGAAGAAACAACGTGCCCGCTGGCTCATCGACACCGACTTCATCGCC
GCCGTGGAGAAGAAGAAATGGGGCCAACAAGGCCGCTGGGGATACCACGT
CGTTGCCCTCTCCAACGACGCCGCCGTGATCGACCGTCTAAACAACGCCA
ACAAGTCCGTGAAGAACACCATCGACCTTTCCACCGCCGATGCTGACGGG
GGCGCCTCTTCCAACGCCGCCGCCACCCGCAAAAAGCGCTCCACCCGCAA
GAGGCGCCAAACTTCGCGGAGCCGCAACGGCAAGGGCAAAAAGCGTAAGG
TCCAACCCGACCCCGCTTCTGCCGATGAAGAGTCCGAACATGACGACTAC
GACGACGGCGACGACGACTTCTGTCCGGACGCCGCTGAAGAAGAGGAAGA
GGAGGAAGAGGAAATGGTCGAGGACGAAGAGGTGGACGAGGATGATGGCG
AC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19998:1213..2264-

>mRNA_L-elsbetiae_contig19998.5993.1 ID=mRNA_L-elsbetiae_contig19998.5993.1|Name=mRNA_L-elsbetiae_contig19998.5993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1452bp|location=Sequence derived from alignment at L-elsbetiae_contig19998:1213..2264- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTGCGGCCACGGCAGCCCCTCCTGCAACGCCACGTGCAACCCCAC
GGGTGATCTCCCGATTACTTGCAACAACAAGATGACTCCGCACTTGCACC
ATGCATATGACATGGTGCCCGTCCTGTTCACCGTCATACCGCCTCACATG
GCGGTTGATTGTGGACCGCACGCTGGAGACGGTACTCAAATCCCCTGTGC
CATCTCCATCGGCACCCAGATGAAGTGCGGCCACGGCAGCCCCTCCTGCA
ACGCCACGTGCAACCCCACGGGTGATCTCCCGATTACTTGCAACAACAAG
ATGACTCCGCACTTGCACCATGCATATGACATGGTGCCCGTCCTGTTCAC
CGTCATACCGCCTCACATGGCGGTTGATTGTGGACCGCACGCTGGAGACG
GTACTCAAATCCCCTGTGCCATCTCCATCGGCACCCAGGCTCTCAAGGAA
CTCTTCCTCTGTGACGGTGAGGAGTTCACCCTCATGGACGACGCCAAGAA
GAAACAACGTGCCCGCTGGCTCATCGACACCGACTTCATCGCCGCCGTGG
AGAAGAAGAAATGGGGCCAACAAGGCCGCTGGGGATACCACGTCGTTGCC
CTCTCCAACGACGCCGCCGTGATCGACCGTCTAAACAACGCCAACAAGTC
CGTGAAGAACACCATCGACCTTTCCACCGCCGATGCTGACGGGGGCGCCT
CTTCCAACGCCGCCGCCACCCGCAAAAAGCGCTCCACCCGCAAGAGGCGC
CAAACTTCGCGGAGCCGCAACGGCAAGGGCAAAAAGCGTAAGGTCCAACC
CGACCCCGCTTCTGCCGATGAAGAGTCCGAACATGACGACTACGACGACG
GCGACGACGACTTCTGTCCGGACGCCGCTGAAGAAGAGGAAGAGGAGGAA
GAGGAAATGGTCGAGGACGAAGAGGTGGACGAGGATGATGGCGACGCTCT
CAAGGAACTCTTCCTCTGTGACGGTGAGGAGTTCACCCTCATGGACGACG
CCAAGAAGAAACAACGTGCCCGCTGGCTCATCGACACCGACTTCATCGCC
GCCGTGGAGAAGAAGAAATGGGGCCAACAAGGCCGCTGGGGATACCACGT
CGTTGCCCTCTCCAACGACGCCGCCGTGATCGACCGTCTAAACAACGCCA
ACAAGTCCGTGAAGAACACCATCGACCTTTCCACCGCCGATGCTGACGGG
GGCGCCTCTTCCAACGCCGCCGCCACCCGCAAAAAGCGCTCCACCCGCAA
GAGGCGCCAAACTTCGCGGAGCCGCAACGGCAAGGGCAAAAAGCGTAAGG
TCCAACCCGACCCCGCTTCTGCCGATGAAGAGTCCGAACATGACGACTAC
GACGACGGCGACGACGACTTCTGTCCGGACGCCGCTGAAGAAGAGGAAGA
GGAGGAAGAGGAAATGGTCGAGGACGAAGAGGTGGACGAGGATGATGGCG
AC
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