mRNA_L-elsbetiae_contig19997.5992.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig19997.5992.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.380e-36 Identity = 108/158 (68.35%), Postives = 113/158 (71.52%), Query Frame = 1 Query: 1 GDAKVAKVKGSQEAHEAIRPALVGASEG-----------EEEGXXXXXXXXXXXXXAGTRGAATGVGVGRFRHPSELPL--DGG----LEDQQRALYDLVYRRTLASAMAESEADFTTVRLGAAG-----GGGVVDVVLKATGKTTVFEGFLKAYREE 408 GDAK KVKGSQEAHEAIRPALVGA+ EEE XXXXXXXXXXXX G GRF HP+ELP+ DGG LE+Q RALYDLVYRRTLASAMAESEADFTTV LGA G G VVDVVLKA+GKTTVFEGFLKAYREE Sbjct: 457 GDAKTVKVKGSQEAHEAIRPALVGATPAATDTADGKQAREEEXXXXXXXXXXXXXTTG----------GRFLHPTELPVEEDGGGGRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEEVVDVVLKASGKTTVFEGFLKAYREE 604
BLAST of mRNA_L-elsbetiae_contig19997.5992.1 vs. uniprot
Match: A0A6H5KCV2_9PHAE (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE) HSP 1 Score: 138 bits (348), Expect = 2.710e-35 Identity = 102/156 (65.38%), Postives = 112/156 (71.79%), Query Frame = 1 Query: 1 GDAKVAKVKGSQEAHEAIRPALVGAS-------EGEEEGXXXXXXXXXXXXXAGTRGAATGVGVGRFRHPSELPLDG--------GLEDQQRALYDLVYRRTLASAMAESEADFTTVRLGAAG-----GGGVVDVVLKATGKTTVFEGFLKAYREE 408 GDAKV KVKGSQEAHEAIRPALVGA+ +G++ G XXXXXXXXXXX GRF HP+ELP++ GLE+Q RALYDLVYRRTLASAMAESEADFTTV LGA G G VVDVVLKA+GKTTVF+GFLKAYR E Sbjct: 158 GDAKVVKVKGSQEAHEAIRPALVGATPAATDTHDGKQAGEEXXXXXXXXXXXXXXXXXG-----GRFLHPTELPVEEXXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEEVVDVVLKASGKTTVFDGFLKAYRVE 308
BLAST of mRNA_L-elsbetiae_contig19997.5992.1 vs. uniprot
Match: D7G724_ECTSI (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G724_ECTSI) HSP 1 Score: 104 bits (259), Expect = 2.620e-24 Identity = 73/139 (52.52%), Postives = 77/139 (55.40%), Query Frame = 1 Query: 1 GDAKVAKVKGSQEAHEAIRPALVGASEGEEEGXXXXXXXXXXXXXAGTRGAATGVGVGRFRHPSELPLDGGLEDQQRALYDLVYRRTLASAMAESEADFTTVRLGAAG-----GGGVVDVVLKATGKTTVFEGFLKAYR 402 GDAK KVKGSQEAHEAIRPAL + G AG LE+Q RA YDLVYRRTLASAMAESEAD TTV LGA G G VVDVVLKA+G TT+FEGFLK R Sbjct: 111 GDAKAVKVKGSQEAHEAIRPAL------QVVGAVPAATDTPDGNPAGGEEXXXXXXXXXXXXXXXXXXXXXLEEQHRAPYDLVYRRTLASAMAESEADLTTVSLGAGGVSLGDGEEVVDVVLKASGMTTLFEGFLKISR 243
BLAST of mRNA_L-elsbetiae_contig19997.5992.1 vs. uniprot
Match: A0A845LY03_9RHOB (DNA topoisomerase 1 n=1 Tax=Maritimibacter harenae TaxID=2606218 RepID=A0A845LY03_9RHOB) HSP 1 Score: 66.2 bits (160), Expect = 6.050e-10 Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 1 Query: 187 PSELPLDGG----LEDQQRALYDLVYRRTLASAMAESEADFTTVRLGAAGGGGVVDVVLKATGKTTVFEGFLKAYREETDED 420 P+++ LD G LE QR LYDL+++RTLA MA ++ + TTV +G+A G V L+ATG+ +F+GFLK Y E D+D Sbjct: 348 PTDMSLDAGQLGKLEADQRKLYDLIWKRTLACQMAGAKLERTTVEIGSADG----QVGLRATGQVVLFDGFLKVYEEGRDDD 425
BLAST of mRNA_L-elsbetiae_contig19997.5992.1 vs. uniprot
Match: UPI00048C4BFA (type I DNA topoisomerase n=1 Tax=Prevotella sp. HUN102 TaxID=1392486 RepID=UPI00048C4BFA) HSP 1 Score: 65.1 bits (157), Expect = 1.520e-9 Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 1 Query: 223 QQRALYDLVYRRTLASAMAESEADFTTVRLGAAGGGGVVDVVLK--ATGKTTVFEGFLKAYREETDED 420 Q++ LYDL+++RT+AS MA++ D TTV +G G G D L+ ATG+ VF+GFLK YRE TD+D Sbjct: 350 QEKRLYDLIWKRTVASQMADARIDKTTVNIGIIDGNGKSDDSLQFIATGEVIVFDGFLKVYRESTDDD 417
BLAST of mRNA_L-elsbetiae_contig19997.5992.1 vs. uniprot
Match: A0A521XHW9_9ACTN (DNA topoisomerase 1 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A521XHW9_9ACTN) HSP 1 Score: 65.1 bits (157), Expect = 1.560e-9 Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1 Query: 178 FRHPSELPLDGGLEDQQRALYDLVYRRTLASAMAESEADFTTVRLGAAGGGGVVDVVLKATGKTTVFEGFLKAYREETDED 420 FR P+++ G L ALYDL+++RT+AS MA++ TTVRLGA GV D A+G VF GFL AY E TDED Sbjct: 528 FRTPAQVA--GELRGDDFALYDLIWKRTVASQMADARVSTTTVRLGAQTAAGV-DAEFAASGTVIVFAGFLAAYEEGTDED 605
BLAST of mRNA_L-elsbetiae_contig19997.5992.1 vs. uniprot
Match: A0A8I1IYN8_9RHOB (DNA topoisomerase 1 n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A8I1IYN8_9RHOB) HSP 1 Score: 64.3 bits (155), Expect = 2.840e-9 Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 187 PSELPLDGG----LEDQQRALYDLVYRRTLASAMAESEADFTTVRLGAAGGGGVVDVVLKATGKTTVFEGFLKAYREETDE 417 P+++ D G LE QR LYDL+++RTLAS MA + + TTV +GAA G V L+A+G+ +F+GFLK Y E DE Sbjct: 348 PTDMGRDAGALGRLEADQRKLYDLIWKRTLASQMAAARLERTTVEIGAADG----QVGLRASGQVVLFDGFLKVYEEGRDE 424
BLAST of mRNA_L-elsbetiae_contig19997.5992.1 vs. uniprot
Match: A0A356V4U8_9RHOB (DNA topoisomerase (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A356V4U8_9RHOB) HSP 1 Score: 63.9 bits (154), Expect = 3.750e-9 Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 1 Query: 187 PSELPLDGG----LEDQQRALYDLVYRRTLASAMAESEADFTTVRLGAAGGGGVVDVVLKATGKTTVFEGFLKAYREETDE 417 P+++ +D G LE QR LYDL+++RTLAS M +++ + TTV +G+ G VVL+ATG+ +F+GF+K Y E D+ Sbjct: 348 PTDMSVDAGKLARLEADQRKLYDLIWKRTLASQMEQAKLERTTVDMGSEDG----QVVLRATGQVVLFDGFMKVYEEGRDD 424
BLAST of mRNA_L-elsbetiae_contig19997.5992.1 vs. uniprot
Match: A0A133QHS1_9BACT (DNA topoisomerase 1 n=3 Tax=Prevotella corporis TaxID=28128 RepID=A0A133QHS1_9BACT) HSP 1 Score: 63.5 bits (153), Expect = 5.230e-9 Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 1 Query: 223 QQRALYDLVYRRTLASAMAESEADFTTVRLGAAG--GGGVVDVVLKATGKTTVFEGFLKAYREETDED 420 Q++ LYDL+++RT+AS MA+++ D TTV +G G GG D+ ATG+ F+GFLK YRE T+++ Sbjct: 355 QEKRLYDLIWKRTIASQMADAKIDKTTVNIGIVGEEGGDAGDLQFVATGEVVAFDGFLKVYRESTEDE 422
BLAST of mRNA_L-elsbetiae_contig19997.5992.1 vs. uniprot
Match: UPI001F5AADFD (type I DNA topoisomerase n=1 Tax=Aliiroseovarius sp. N1Y82 TaxID=2925840 RepID=UPI001F5AADFD) HSP 1 Score: 63.5 bits (153), Expect = 5.270e-9 Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 1 Query: 187 PSELPLDGG----LEDQQRALYDLVYRRTLASAMAESEADFTTVRLGAAGGGGVVDVVLKATGKTTVFEGFLKAYREETDE 417 P+++ +D LE QR LYDL+++RTLAS M + + T+V +G+A G +VVL+ATG+ +FEGFLK Y E D+ Sbjct: 348 PTDMTVDASALARLEPDQRKLYDLIWKRTLASQMESARLERTSVDVGSADG----EVVLRATGQVVLFEGFLKVYEEGRDD 424 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19997.5992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19997.5992.1 >prot_L-elsbetiae_contig19997.5992.1 ID=prot_L-elsbetiae_contig19997.5992.1|Name=mRNA_L-elsbetiae_contig19997.5992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp GDAKVAKVKGSQEAHEAIRPALVGASEGEEEGGGDEDTGAAAAGGAGTRGback to top mRNA from alignment at L-elsbetiae_contig19997:148..974+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig19997.5992.1 ID=mRNA_L-elsbetiae_contig19997.5992.1|Name=mRNA_L-elsbetiae_contig19997.5992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=827bp|location=Sequence derived from alignment at L-elsbetiae_contig19997:148..974+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19997:148..974+ >mRNA_L-elsbetiae_contig19997.5992.1 ID=mRNA_L-elsbetiae_contig19997.5992.1|Name=mRNA_L-elsbetiae_contig19997.5992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig19997:148..974+ (Laminarionema elsbetiae ELsaHSoW15)back to top |