mRNA_L-elsbetiae_contig19992.5991.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19992.5991.1
Unique NamemRNA_L-elsbetiae_contig19992.5991.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19992.5991.1 vs. uniprot
Match: D8LLA6_ECTSI (Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLA6_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.680e-27
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK 147
            QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK
Sbjct:  411 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK 459
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BLAST of mRNA_L-elsbetiae_contig19992.5991.1 vs. uniprot
Match: A0A7S4J9M2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9M2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.060e-27
Identity = 43/49 (87.76%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK 147
            ++R+KPA+NPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLP+
Sbjct:    4 KLRYKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPE 52
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BLAST of mRNA_L-elsbetiae_contig19992.5991.1 vs. uniprot
Match: A0A453PNK6_AEGTS (AA_TRNA_LIGASE_II domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453PNK6_AEGTS)

HSP 1 Score: 101 bits (252), Expect = 8.770e-27
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK 147
            ++RFKPAYNPYTEPSMEIFGYH DLKKW EIGNSGMFRPEMLLPMGLP+
Sbjct:    3 KLRFKPAYNPYTEPSMEIFGYHEDLKKWVEIGNSGMFRPEMLLPMGLPE 51
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BLAST of mRNA_L-elsbetiae_contig19992.5991.1 vs. uniprot
Match: W7T7M1_9STRA (Phenylalanyl-trna synthetase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7M1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.370e-26
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    4 IRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK 147
            ++FKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLP+
Sbjct:   70 LKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPE 117
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BLAST of mRNA_L-elsbetiae_contig19992.5991.1 vs. uniprot
Match: K0TQQ6_THAOC (Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQQ6_THAOC)

HSP 1 Score: 104 bits (259), Expect = 2.420e-26
Identity = 44/49 (89.80%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK 147
            Q+RFKPA+NPYTEPSME+FGYHPDLKKWTEIGNSGMFRPEML PMGLP+
Sbjct:  134 QLRFKPAFNPYTEPSMEVFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPE 182
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BLAST of mRNA_L-elsbetiae_contig19992.5991.1 vs. uniprot
Match: A0A7S2Y5I1_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5I1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.520e-26
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK 147
            Q+RFKPA+NPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLP+
Sbjct:  145 QLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLQPMGLPE 193
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BLAST of mRNA_L-elsbetiae_contig19992.5991.1 vs. uniprot
Match: A0A024GBH7_9STRA (AA_TRNA_LIGASE_II domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GBH7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.960e-26
Identity = 44/49 (89.80%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK 147
            ++RFKPAYNPYTEPSMEIF +HPDLKKWTEIGNSG+FRPEMLLPMGLPK
Sbjct:  106 KMRFKPAYNPYTEPSMEIFAFHPDLKKWTEIGNSGVFRPEMLLPMGLPK 154
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BLAST of mRNA_L-elsbetiae_contig19992.5991.1 vs. uniprot
Match: A0A812V904_SYMMI (Phenylalanine--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V904_SYMMI)

HSP 1 Score: 104 bits (259), Expect = 5.300e-26
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK 147
            Q+RFKPAYNPYTEPSMEIFGYHP+LKKWTEIGNSGMFRPEML PMGLP+
Sbjct:  189 QLRFKPAYNPYTEPSMEIFGYHPELKKWTEIGNSGMFRPEMLRPMGLPE 237
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BLAST of mRNA_L-elsbetiae_contig19992.5991.1 vs. uniprot
Match: A0A482RHV7_9ARCH (AA_TRNA_LIGASE_II domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RHV7_9ARCH)

HSP 1 Score: 102 bits (255), Expect = 2.110e-25
Identity = 43/49 (87.76%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK 147
            ++RFKPAYNPYTEPSME+FGYHPDLKKWTEIGNSG+FRPEML PMGLP+
Sbjct:  190 ELRFKPAYNPYTEPSMEVFGYHPDLKKWTEIGNSGIFRPEMLRPMGLPE 238
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BLAST of mRNA_L-elsbetiae_contig19992.5991.1 vs. uniprot
Match: UPI001035B4B0 (phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001035B4B0)

HSP 1 Score: 97.8 bits (242), Expect = 2.270e-25
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK 147
            +++FKPAYNPYTEPSMEIFGYH  LKKW EIGNSGMFRPEMLLPMGLP+
Sbjct:    3 KLKFKPAYNPYTEPSMEIFGYHEGLKKWVEIGNSGMFRPEMLLPMGLPE 51
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19992.5991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLA6_ECTSI3.680e-27100.00Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxI... [more]
A0A7S4J9M2_9STRA5.060e-2787.76Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A453PNK6_AEGTS8.770e-2789.80AA_TRNA_LIGASE_II domain-containing protein n=1 Ta... [more]
W7T7M1_9STRA1.370e-2691.67Phenylalanyl-trna synthetase n=1 Tax=Nannochlorops... [more]
K0TQQ6_THAOC2.420e-2689.80Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Thal... [more]
A0A7S2Y5I1_9STRA2.520e-2691.84Phenylalanine--tRNA ligase n=1 Tax=Amphiprora palu... [more]
A0A024GBH7_9STRA4.960e-2689.80AA_TRNA_LIGASE_II domain-containing protein n=1 Ta... [more]
A0A812V904_SYMMI5.300e-2691.84Phenylalanine--tRNA ligase n=1 Tax=Symbiodinium mi... [more]
A0A482RHV7_9ARCH2.110e-2587.76AA_TRNA_LIGASE_II domain-containing protein (Fragm... [more]
UPI001035B4B02.270e-2585.71phenylalanine--tRNA ligase alpha subunit, cytoplas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19992contigL-elsbetiae_contig19992:2385..2540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1e-22
Seed eggNOG ortholog2880.D8LLA6
Preferred nameFARSA
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0002161,GO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0052689,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.phenylalanyl-tRNA aminoacylation
EggNOG OGsCOG0016@1,KOG2784@2759
EC6.1.1.20
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.5102615-CDS-L-elsbetiae_contig19992:2384..25401622815825.5102615-CDS-L-elsbetiae_contig19992:2384..2540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19992 2385..2540 +
1691683127.5886128-CDS-L-elsbetiae_contig19992:2384..25401691683127.5886128-CDS-L-elsbetiae_contig19992:2384..2540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19992 2385..2540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19992.5991.1prot_L-elsbetiae_contig19992.5991.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19992 2385..2540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19992.5991.1

>prot_L-elsbetiae_contig19992.5991.1 ID=prot_L-elsbetiae_contig19992.5991.1|Name=mRNA_L-elsbetiae_contig19992.5991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKV
R*
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mRNA from alignment at L-elsbetiae_contig19992:2385..2540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19992.5991.1 ID=mRNA_L-elsbetiae_contig19992.5991.1|Name=mRNA_L-elsbetiae_contig19992.5991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig19992:2385..2540+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATCCGCTTCAAGCCCGCGTACAACCCGTACACCGAGCCGTCGATGGA
AATCTTCGGCTACCACCCAGACCTCAAGAAGTGGACCGAGATCGGCAACA
GCGGCATGTTCCGCCCTGAGATGCTCCTCCCCATGGGGCTCCCCAAGGTG
CGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19992:2385..2540+

>mRNA_L-elsbetiae_contig19992.5991.1 ID=mRNA_L-elsbetiae_contig19992.5991.1|Name=mRNA_L-elsbetiae_contig19992.5991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig19992:2385..2540+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATCCGCTTCAAGCCCGCGTACAACCCGTACACCGAGCCGTCGATGGA
AATCTTCGGCTACCACCCAGACCTCAAGAAGTGGACCGAGATCGGCAACA
GCGGCATGTTCCGCCCTGAGATGCTCCTCCCCATGGGGCTCCCCAAGGTG
CGCTGACAGATCCGCTTCAAGCCCGCGTACAACCCGTACACCGAGCCGTC
GATGGAAATCTTCGGCTACCACCCAGACCTCAAGAAGTGGACCGAGATCG
GCAACAGCGGCATGTTCCGCCCTGAGATGCTCCTCCCCATGGGGCTCCCC
AAGGTGCGCTGA
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