mRNA_L-elsbetiae_contig1999.5990.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1999.5990.1
Unique NamemRNA_L-elsbetiae_contig1999.5990.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1999.5990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1999contigL-elsbetiae_contig1999:20054..20781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size307
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1999.5990.1prot_L-elsbetiae_contig1999.5990.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1999 20094..20724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.2855337-UTR-L-elsbetiae_contig1999:20053..200931622815825.2855337-UTR-L-elsbetiae_contig1999:20053..20093Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1999 20054..20093 +
1691683127.42511-UTR-L-elsbetiae_contig1999:20053..200931691683127.42511-UTR-L-elsbetiae_contig1999:20053..20093Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1999 20054..20093 +
1622815825.320618-UTR-L-elsbetiae_contig1999:20724..207811622815825.320618-UTR-L-elsbetiae_contig1999:20724..20781Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1999 20725..20781 +
1691683127.4628088-UTR-L-elsbetiae_contig1999:20724..207811691683127.4628088-UTR-L-elsbetiae_contig1999:20724..20781Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1999 20725..20781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.2956085-CDS-L-elsbetiae_contig1999:20093..201641622815825.2956085-CDS-L-elsbetiae_contig1999:20093..20164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 20094..20164 +
1691683127.439973-CDS-L-elsbetiae_contig1999:20093..201641691683127.439973-CDS-L-elsbetiae_contig1999:20093..20164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 20094..20164 +
1622815825.3084462-CDS-L-elsbetiae_contig1999:20585..207241622815825.3084462-CDS-L-elsbetiae_contig1999:20585..20724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 20586..20724 +
1691683127.4528828-CDS-L-elsbetiae_contig1999:20585..207241691683127.4528828-CDS-L-elsbetiae_contig1999:20585..20724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1999 20586..20724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1999.5990.1

>prot_L-elsbetiae_contig1999.5990.1 ID=prot_L-elsbetiae_contig1999.5990.1|Name=mRNA_L-elsbetiae_contig1999.5990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
MADNLVYYMLGVIFSFVFGIPMFRCLNNNFIRPWMTNKQERMSHALHDAA
NQAASSVANVHIKQQSRGS*
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mRNA from alignment at L-elsbetiae_contig1999:20054..20781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1999.5990.1 ID=mRNA_L-elsbetiae_contig1999.5990.1|Name=mRNA_L-elsbetiae_contig1999.5990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=728bp|location=Sequence derived from alignment at L-elsbetiae_contig1999:20054..20781+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGAAGCTCGCACATAGTTTATCTACATAGCCTGGCACCATGGCGGATA
ACTTGGTGTACTACATGCTGGGGGTCATCTTCTCGTTTGTCTTCGGCATT
CCGATGTTTAGGTCAGTTGTTGAGATAAAAATACTTCTCTACCATGAATG
GACACAGGGTCGCGGCGCTCGATTTTTGTATCCGAAAGTATATCTAGATA
TGTAGCACCAGGAGGCACTACCACATAGAACTCGGATACCTATGTAGACT
AGTCTCGACTATATCCAAAGGTACTGCAGCAGTAGTCGAGTGTAGACGTA
TGCCTACTGCTGCAGTACCTACACGGTGGACAAACAAACAAACGAAGGAG
ACTCTACACTGTTGTGCCGGAAATAGACAGGGGGCAAAGTAGGTTCGGAT
ATAGATATACTGTGTATGAGTGGTGTCAAAAACTGACAGCAATCGAGACG
GGCGATGTCAACTAGTTCGTTTGGATGTTGCGAATGCGAAAAGTATGGTT
TGAAAACTCCGGCGGTTGCGTTACTCGGGCAGGTGTCTGAACAACAATTT
CATCAGGCCCTGGATGACCAACAAACAGGAGAGAATGAGCCATGCCCTCC
ATGACGCGGCGAATCAAGCGGCGAGCTCCGTAGCAAATGTCCACATCAAG
CAGCAGAGCAGGGGAAGCTAGGACTACATACGGAATTTGTGAACGCTCCG
TTCTTTCGTTTTTGGGTTTTTCTGCAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1999:20054..20781+

>mRNA_L-elsbetiae_contig1999.5990.1 ID=mRNA_L-elsbetiae_contig1999.5990.1|Name=mRNA_L-elsbetiae_contig1999.5990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig1999:20054..20781+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGATAACTTGGTGTACTACATGCTGGGGGTCATCTTCTCGTTTGT
CTTCGGCATTCCGATGTTTAGATGGCGGATAACTTGGTGTACTACATGCT
GGGGGTCATCTTCTCGTTTGTCTTCGGCATTCCGATGTTTAGGTGTCTGA
ACAACAATTTCATCAGGCCCTGGATGACCAACAAACAGGAGAGAATGAGC
CATGCCCTCCATGACGCGGCGAATCAAGCGGCGAGCTCCGTAGCAAATGT
CCACATCAAGCAGCAGAGCAGGGGAAGCTAGGTGTCTGAACAACAATTTC
ATCAGGCCCTGGATGACCAACAAACAGGAGAGAATGAGCCATGCCCTCCA
TGACGCGGCGAATCAAGCGGCGAGCTCCGTAGCAAATGTCCACATCAAGC
AGCAGAGCAGGGGAAGCTAG
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