mRNA_L-elsbetiae_contig1997.5986.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1997.5986.1
Unique NamemRNA_L-elsbetiae_contig1997.5986.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1997.5986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1997contigL-elsbetiae_contig1997:7371..7799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size390
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.1121325-UTR-L-elsbetiae_contig1997:7370..74091622815825.1121325-UTR-L-elsbetiae_contig1997:7370..7409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1997 7371..7409 +
1691683127.3189347-UTR-L-elsbetiae_contig1997:7370..74091691683127.3189347-UTR-L-elsbetiae_contig1997:7370..7409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1997 7371..7409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.1247222-CDS-L-elsbetiae_contig1997:7409..77991622815825.1247222-CDS-L-elsbetiae_contig1997:7409..7799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1997 7410..7799 +
1691683127.3299048-CDS-L-elsbetiae_contig1997:7409..77991691683127.3299048-CDS-L-elsbetiae_contig1997:7409..7799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1997 7410..7799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1997.5986.1prot_L-elsbetiae_contig1997.5986.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1997 7410..7799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1997.5986.1

>prot_L-elsbetiae_contig1997.5986.1 ID=prot_L-elsbetiae_contig1997.5986.1|Name=mRNA_L-elsbetiae_contig1997.5986.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MGLCCSAVFLRGLKQFYAENSTVALSGRKNQTYGIQHLLLLVNKKNPPKQ
ISPSANKEAADIYYFRLRRKTCGPKAFPAASRRLGNLRAAQILPKNPRFR
TSAAHFCKPGVNMCDVTCPAMVGMPSQAS*
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mRNA from alignment at L-elsbetiae_contig1997:7371..7799+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1997.5986.1 ID=mRNA_L-elsbetiae_contig1997.5986.1|Name=mRNA_L-elsbetiae_contig1997.5986.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=429bp|location=Sequence derived from alignment at L-elsbetiae_contig1997:7371..7799+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTTTCCAAATAGCCCTTCAATGTCAAAATGTAGTTAATGGGTTTATG
CTGCAGTGCAGTATTTTTACGTGGTTTGAAGCAATTTTACGCAGAAAATA
GTACCGTCGCACTGTCGGGGAGAAAGAATCAAACATACGGGATACAACAC
CTTCTCTTGCTGGTGAACAAAAAGAACCCCCCAAAACAAATTTCGCCTTC
GGCGAACAAGGAGGCCGCAGATATATATTATTTTCGCCTCCGGCGAAAAA
CCTGCGGCCCAAAAGCTTTTCCTGCGGCAAGCCGCAGATTAGGCAATCTG
CGCGCAGCACAGATTTTACCAAAAAACCCGCGCTTCCGCACCTCCGCAGC
CCACTTTTGCAAGCCTGGTGTGAACATGTGTGATGTGACATGCCCCGCGA
TGGTGGGCATGCCATCTCAGGCCAGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1997:7371..7799+

>mRNA_L-elsbetiae_contig1997.5986.1 ID=mRNA_L-elsbetiae_contig1997.5986.1|Name=mRNA_L-elsbetiae_contig1997.5986.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig1997:7371..7799+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTTTATGCTGCAGTGCAGTATTTTTACGTGGTTTGAAGCAATTTTA
CGCAGAAAATAGTACCGTCGCACTGTCGGGGAGAAAGAATCAAACATACG
GGATACAACACCTTCTCTTGCTGGTGAACAAAAAGAACCCCCCAAAACAA
ATTTCGCCTTCGGCGAACAAGGAGGCCGCAGATATATATTATTTTCGCCT
CCGGCGAAAAACCTGCGGCCCAAAAGCTTTTCCTGCGGCAAGCCGCAGAT
TAGGCAATCTGCGCGCAGCACAGATTTTACCAAAAAACCCGCGCTTCCGC
ACCTCCGCAGCCCACTTTTGCAAGCCTGGTGTGAACATGTGTGATGTGAC
ATGCCCCGCGATGGTGGGCATGCCATCTCAGGCCAGCTAGATGGGTTTAT
GCTGCAGTGCAGTATTTTTACGTGGTTTGAAGCAATTTTACGCAGAAAAT
AGTACCGTCGCACTGTCGGGGAGAAAGAATCAAACATACGGGATACAACA
CCTTCTCTTGCTGGTGAACAAAAAGAACCCCCCAAAACAAATTTCGCCTT
CGGCGAACAAGGAGGCCGCAGATATATATTATTTTCGCCTCCGGCGAAAA
ACCTGCGGCCCAAAAGCTTTTCCTGCGGCAAGCCGCAGATTAGGCAATCT
GCGCGCAGCACAGATTTTACCAAAAAACCCGCGCTTCCGCACCTCCGCAG
CCCACTTTTGCAAGCCTGGTGTGAACATGTGTGATGTGACATGCCCCGCG
ATGGTGGGCATGCCATCTCAGGCCAGCTAG
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