mRNA_L-elsbetiae_contig1997.5985.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1997.5985.1
Unique NamemRNA_L-elsbetiae_contig1997.5985.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1997.5985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1997contigL-elsbetiae_contig1997:1423..3837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size187
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.0632594-CDS-L-elsbetiae_contig1997:1423..15051622815825.0632594-CDS-L-elsbetiae_contig1997:1423..1505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1997 1424..1505 -
1691683127.2979786-CDS-L-elsbetiae_contig1997:1423..15051691683127.2979786-CDS-L-elsbetiae_contig1997:1423..1505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1997 1424..1505 -
1622815825.0771759-CDS-L-elsbetiae_contig1997:3733..38371622815825.0771759-CDS-L-elsbetiae_contig1997:3733..3837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1997 3734..3837 -
1691683127.30845-CDS-L-elsbetiae_contig1997:3733..38371691683127.30845-CDS-L-elsbetiae_contig1997:3733..3837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1997 3734..3837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1997.5985.1prot_L-elsbetiae_contig1997.5985.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1997 1424..3837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1997.5985.1

>prot_L-elsbetiae_contig1997.5985.1 ID=prot_L-elsbetiae_contig1997.5985.1|Name=mRNA_L-elsbetiae_contig1997.5985.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
PEQSSKHYKATTIFSDQATYRALSRDHEVISFRTRYAPRQRALGAVKHGR
GSRSRSVEPARS
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mRNA from alignment at L-elsbetiae_contig1997:1423..3837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1997.5985.1 ID=mRNA_L-elsbetiae_contig1997.5985.1|Name=mRNA_L-elsbetiae_contig1997.5985.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2415bp|location=Sequence derived from alignment at L-elsbetiae_contig1997:1423..3837- (Laminarionema elsbetiae ELsaHSoW15)
CCAGAGCAATCAAGCAAGCATTACAAAGCAACTACGATCTTTTCTGACCA
AGCCACCTACCGGGCTTTATCCAGAGACCACGAGGTCATCAGCTTCCGAA
CTCGGTACGTCGTCGTTCGATCTATGTCAAGAACACGCGTCTTGTGGCTC
GTGCATGCAGCAGCATGCGTTTTTCTGGTAGACCAGAACCTCTCTCGCTC
TCTCATGTTAGACCTCGAGCTCTGGTCCAACCCTCTAGACTAGTGACGAA
CGACCCTGTAACATGGTGCCAAATCCGATGACGCATGACACACCAGGTAC
CCTGGTAGTTTCGCTTGCTTGCTAGCTGCTATTTTTGCAACTCGGTGCTG
CTTGTAGTCTATCTCGCCGCTTTCTCGGACCACCGAGATTTTTATCGCGC
CGAAGCTCCGAGGTGTGCTTCTAGCCACGTGACCTTTCTCTAGGGGTGAT
ACGTGAGTTTAATGGTCCGGATGTCCATTATGATGAGTGTTCTTGTTGCG
TTATACATTTGGTGGTATGTAGAGTCACGAACATGGACTGCTGTGGGATG
ACAGACAATTGAAATTTTGTGGTCCGAAAGCTGTGAGGTAAGCACACAAT
TTGCGGGCATAGTATGTGTCTGCAAGTGTAGTTGGCGGGTGCGCCATCTG
GTAAGTGTGGCGCATCATTTTTGTTATTGGAACTTGTCTGCTGTGCGCAT
GTGAGAGCACAGACACAAAGGCCCGGGTAAGTTTTCGGGTAAAGTATATA
CAACAAGTGGATATGGACATCCATCCTCCGGACATTGATGAGCTGATACC
CCGGTGGATTTATCTAGAGAAGTTCGCCACGATTTGAAGCACTTCACCAC
CAGTTCTCCCCCATGGCTCCGGTTAGCTGAGCACAATGCAAAGAAACATG
AAGAAAAGAAGCGAGCAATATGGCATTGATACCGTGTGGAAGCCGGGGTC
GTGAATTGAGGCTGCGTGTGTTGATTTTGCTCCTCGGCTCGGTCGGCCTC
TATGGGTTCGAGTTCTGACGTCAAAATGTTTTGGCAAACTCTTGGGCCAT
CACATTATTAACAGAGGTATTGTATCTCAGGGAGTATTTACAGGTACGGT
ATCTCTCAGGGAGTATTGAGTATTTAGAAGACACGGGTACTGCGGTATAT
TTCGGGTATACCCTGGGTCATACATATGTACGTAGAATTTGCATTTTGTT
TTTTTTTGTCTGCCTCGTATGTACCATTGACTGCTGTTTGCATTTTCTGA
GCAAGGTGGATGCGAAAAGCGTATGGCATTTGGTAGGTTAAACTTATTTT
GCATGTGATACTGAAAGCTGGGTGACAACTGCGCTAAACGTGAACGTTAT
TGTTCTGTTTTATTTCGTGCGTGCGCGCACGGTGGATACTTGCGCATCAA
CACGTGCGCTCACTCATTCAATGCTCTTCTTCATTCATTTTTTTTGTTTT
CTAATATTTTATTCTCTATTTTCGTGCGTGCGCGCACGGTGGTTGCGTGC
ACAATCAACACAAGTGCGCGCACTCATTAATTTATTGTTATATATTTTTT
ATTTATTTTTAGCCTGCCATTTTAGGTACTGCTGTTGTCGGCAGTATCAC
TGGGCAGGTGAGTGTGACACCTTATGTCGCATCTTGTTTCTTCGATACGT
ATTTTTCCGATTTCTTTTTTTCTCTTCTGCTGTATGAAGTACCTCTCGCG
CGCGGTAAGAGCGCTGATGTACAGCAGCGTGTTTCTGTATTCGTGCACGG
TAAGGCACAAAGAGTTAGACGTCTGGTGAGTGCGTCTACCTGTACGATTC
CCATGGTCCGTTCGGCTGCGCTGCGCAGCACGTGTCGTTAGTTTTTTTCT
TGTTATCTTGCTTTCGTGCCTGACGTTTGGTGAGGACGCAGGCACTTTCA
GTTCTCCGTCTGCATGGGCTGCGGGGGAGGCGTTTCTCTTTCTGGATTGA
TTATCGTTCCCGGCTACTCCTTTTTTTTCGCTTTTTGTTTTCATGTTATG
CTATGCAGCCTCTTGAGCTACCGCTGCCCTTACTTATCTTCGGCTTCAGC
TGAGCCAGACCTATCGACTCTGGGTGCCGCTCCAACCGACCACGTGTTGG
TGCTGCTACAAGCAAACAAGCAAGGGGGGAGAATACGAGTCGGTTGCAGC
AAATCCGGGTGCGGGAGGATTGGAGGATCGGAAGCCACGGCGGTGTACCA
AGTGTTTCGCGTTACAGCGGTGGAGTTTGGCCTCGTTCGTGTCTTTCTCC
GTTCCTTTTTCGCCTTTCCCTCGTTCTCTCCTCGCCTGCTTTTCGCTGTG
TGCTGTTGCCACCGTCTTTGTTGATGGCACAGGTATGCCCCGCGCCAACG
AGCGTTGGGAGCTGTCAAGCACGGACGCGGCAGCCGTTCGCGGAGTGTGG
AACCAGCGAGGAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1997:1423..3837-

>mRNA_L-elsbetiae_contig1997.5985.1 ID=mRNA_L-elsbetiae_contig1997.5985.1|Name=mRNA_L-elsbetiae_contig1997.5985.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig1997:1423..3837- (Laminarionema elsbetiae ELsaHSoW15)
CCAGAGCAATCAAGCAAGCATTACAAAGCAACTACGATCTTTTCTGACCA
AGCCACCTACCGGGCTTTATCCAGAGACCACGAGGTCATCAGCTTCCGAA
CTCGCCAGAGCAATCAAGCAAGCATTACAAAGCAACTACGATCTTTTCTG
ACCAAGCCACCTACCGGGCTTTATCCAGAGACCACGAGGTCATCAGCTTC
CGAACTCGGTATGCCCCGCGCCAACGAGCGTTGGGAGCTGTCAAGCACGG
ACGCGGCAGCCGTTCGCGGAGTGTGGAACCAGCGAGGAGCGTATGCCCCG
CGCCAACGAGCGTTGGGAGCTGTCAAGCACGGACGCGGCAGCCGTTCGCG
GAGTGTGGAACCAGCGAGGAGC
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