mRNA_L-elsbetiae_contig1996.5982.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1996.5982.1
Unique NamemRNA_L-elsbetiae_contig1996.5982.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1996.5982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1996contigL-elsbetiae_contig1996:19939..20710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.9083958-CDS-L-elsbetiae_contig1996:19938..199991622815824.9083958-CDS-L-elsbetiae_contig1996:19938..19999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1996 19939..19999 +
1691683127.2187438-CDS-L-elsbetiae_contig1996:19938..199991691683127.2187438-CDS-L-elsbetiae_contig1996:19938..19999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1996 19939..19999 +
1622815824.9218783-CDS-L-elsbetiae_contig1996:20540..207101622815824.9218783-CDS-L-elsbetiae_contig1996:20540..20710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1996 20541..20710 +
1691683127.2283378-CDS-L-elsbetiae_contig1996:20540..207101691683127.2283378-CDS-L-elsbetiae_contig1996:20540..20710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1996 20541..20710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1996.5982.1prot_L-elsbetiae_contig1996.5982.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1996 19939..20710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1996.5982.1

>prot_L-elsbetiae_contig1996.5982.1 ID=prot_L-elsbetiae_contig1996.5982.1|Name=mRNA_L-elsbetiae_contig1996.5982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
PHNRSWAWGKGEEGDRVANKAALAAQTYIFSPWRREPLRRPSRALGATWP
SSCSASKARNIYSLLLYDTRIVRNLA*
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mRNA from alignment at L-elsbetiae_contig1996:19939..20710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1996.5982.1 ID=mRNA_L-elsbetiae_contig1996.5982.1|Name=mRNA_L-elsbetiae_contig1996.5982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=772bp|location=Sequence derived from alignment at L-elsbetiae_contig1996:19939..20710+ (Laminarionema elsbetiae ELsaHSoW15)
CCACACAACCGTTCATGGGCTTGGGGAAAGGGCGAAGAGGGAGACAGAGT
GGCAAATAAAGGTGGGCTTTCCCCGGCCAGCACCCTACTGAGTTGCGAAC
TAGGGCGCACTCGTGTTATGTATACATACGTGGAAATGGGATGTATTTGA
GGCCATGGAAATCGTGTACGTGCAGCCACGGACGTGAGAGAAAGACGCTG
GTTCCAGCGTGAGGTCGCGATAGTAAGTGGCCGCAAACACAAACACCAGG
ATTCCCCATCCCGCCCCCGCTTATATCGTAGCTATGTACTCCGAAACTTG
TTTTTGAGTATTTAGCGTTTTCCGGAAATAGGATGTTATTTTCGCTAGGC
GTTCACGCGTGTTCGCAGATATACAGAGGGCGGCCACATCGGTCCAAGCA
CTCTGGGGGTGTCCTCTGTACGAGGGTGGCAGTGGCTGCTTCCCTGAGGG
AAGAAGTTACCTCTCAACAGCAAGCGCAGCTTTGAAGCAGGCGATACAGC
AGTGCATGCGAAGACGGTGTACCATGTGTCATGTCCCTGTTTTTGATCAA
CCTTCACCAATCTTCGTAATTCTCCCTCTTGTTACTATGGCTCCCTGTAC
AGCTGCGCTTGCCGCTCAAACGTACATTTTTTCTCCTTGGCGTCGGGAGC
CACTAAGACGCCCATCCAGAGCGCTTGGAGCAACGTGGCCCTCTTCGTGT
TCTGCGTCAAAAGCGAGGAATATATATAGTCTACTGCTGTATGATACACG
TATTGTAAGAAATCTCGCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1996:19939..20710+

>mRNA_L-elsbetiae_contig1996.5982.1 ID=mRNA_L-elsbetiae_contig1996.5982.1|Name=mRNA_L-elsbetiae_contig1996.5982.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig1996:19939..20710+ (Laminarionema elsbetiae ELsaHSoW15)
CCACACAACCGTTCATGGGCTTGGGGAAAGGGCGAAGAGGGAGACAGAGT
GGCAAATAAAGCCACACAACCGTTCATGGGCTTGGGGAAAGGGCGAAGAG
GGAGACAGAGTGGCAAATAAAGCTGCGCTTGCCGCTCAAACGTACATTTT
TTCTCCTTGGCGTCGGGAGCCACTAAGACGCCCATCCAGAGCGCTTGGAG
CAACGTGGCCCTCTTCGTGTTCTGCGTCAAAAGCGAGGAATATATATAGT
CTACTGCTGTATGATACACGTATTGTAAGAAATCTCGCATGACTGCGCTT
GCCGCTCAAACGTACATTTTTTCTCCTTGGCGTCGGGAGCCACTAAGACG
CCCATCCAGAGCGCTTGGAGCAACGTGGCCCTCTTCGTGTTCTGCGTCAA
AAGCGAGGAATATATATAGTCTACTGCTGTATGATACACGTATTGTAAGA
AATCTCGCATGA
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