mRNA_L-elsbetiae_contig1994.5979.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1994.5979.1
Unique NamemRNA_L-elsbetiae_contig1994.5979.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1994.5979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1994contigL-elsbetiae_contig1994:20463..22214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1388
Cds size1386
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.5280013-CDS-L-elsbetiae_contig1994:20462..212111622815824.5280013-CDS-L-elsbetiae_contig1994:20462..21211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1994 20463..21211 +
1691683126.9552715-CDS-L-elsbetiae_contig1994:20462..212111691683126.9552715-CDS-L-elsbetiae_contig1994:20462..21211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1994 20463..21211 +
1622815824.5398383-CDS-L-elsbetiae_contig1994:21577..222141622815824.5398383-CDS-L-elsbetiae_contig1994:21577..22214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1994 21578..22214 +
1691683126.9642797-CDS-L-elsbetiae_contig1994:21577..222141691683126.9642797-CDS-L-elsbetiae_contig1994:21577..22214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1994 21578..22214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1994.5979.1prot_L-elsbetiae_contig1994.5979.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1994 20463..22214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1994.5979.1

>prot_L-elsbetiae_contig1994.5979.1 ID=prot_L-elsbetiae_contig1994.5979.1|Name=mRNA_L-elsbetiae_contig1994.5979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=462bp
MAQLPSPPVQAAAAAAAATRYGVPPSDQCGAATGCRQYRTHAWPATPQQR
QFCATHAEPGMVDTGKRLCRHLGCNTEAAFGGIIGGVGGSGSGSGGGDGD
GNGNDNRPVPKLCAKHATGANTFSGVRAVSSPLPRNKCQWPGDECKIRPF
YGFPGSRNPQFCARHSYDGLVDLRGAGKSRNGGGTTKASGDGNNGNNEPA
VPSKSRPGGGRSCAHPGCPTRPTYGVKGNTARECCAKHARPGMVDVATKR
CKQEDCTKRASFGVDNASDKIAEFCFTHALPGMVNVRSAKCAQAGCKTRP
VFAAPNAARGEFCAAHAKGGMVDVVNKKCRQPGGCLKQPSYGMEGDKRAS
FCAEHAHPGLVNIVSPRCSQEGCLKHAAYGLPGTNNARTSCLSHAVQGMV
LVGSQPATTPQNRRRRIQQQQQLLLQQVGAAGVISTEQQQQVGAGELIPA
KQQQQQHQVVAA
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mRNA from alignment at L-elsbetiae_contig1994:20463..22214+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1994.5979.1 ID=mRNA_L-elsbetiae_contig1994.5979.1|Name=mRNA_L-elsbetiae_contig1994.5979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1752bp|location=Sequence derived from alignment at L-elsbetiae_contig1994:20463..22214+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCAGCTTCCTTCGCCACCAGTCCAGGCCGCCGCGGCTGCTGCTGC
TGCGACGAGATACGGAGTGCCCCCGAGCGACCAGTGCGGTGCGGCTACGG
GCTGCCGGCAGTACCGCACCCACGCATGGCCAGCCACGCCACAGCAGCGT
CAATTTTGCGCGACCCACGCAGAACCGGGGATGGTGGACACGGGAAAGCG
ACTCTGCCGGCACCTGGGCTGCAACACGGAGGCCGCGTTCGGCGGCATAA
TTGGCGGGGTGGGCGGCAGCGGCAGTGGCAGCGGCGGCGGGGACGGGGAC
GGGAACGGGAACGACAACAGGCCCGTCCCGAAGTTGTGCGCGAAACACGC
GACGGGGGCTAACACTTTTTCGGGCGTTCGTGCGGTTTCATCGCCGCTGC
CGCGGAACAAATGCCAGTGGCCGGGCGACGAGTGCAAGATTCGACCCTTC
TACGGATTTCCTGGGTCGAGGAACCCCCAGTTCTGCGCGCGCCATTCCTA
CGACGGTCTGGTTGATCTCCGCGGCGCCGGCAAGAGCAGGAACGGTGGCG
GCACGACAAAGGCGAGTGGCGACGGCAACAACGGCAACAACGAGCCGGCG
GTGCCTAGCAAGAGCAGGCCGGGCGGCGGACGGTCGTGCGCCCACCCGGG
GTGCCCGACCAGACCCACGTACGGGGTGAAGGGAAATACGGCGCGAGAAT
GCTGTGCCAAGCACGCCAGGCCGGGGATGGTGGACGTGGCAACGAAAAGG
TGGGTGTCGTTGCGTGGTGTGCTGTTCTGTGCTGTGTGGTGTGCGGTTTT
CCTATTTCAGGCACGGTGAATAGCTCATAGACCGACGTGATAGACGTCAT
GAGTAGACCAACCACGCCTTTCATACCGCAACCAGGCCCTCTTCGCTACC
TGCGGCTTCGTCGAGTAGAACGAACGCGCGTGTCTCTTATTGTGTGTCGA
AACGCTACATATGTGCCATTAAAAATCTTCAAAGCGGCTTGCGTACGTCC
TTTCCCTTCCCTGTTCTTTATCTTCCCTTCCTGTAACCTGCTTTTCCTTG
CGATTTCTTCGCTTCGCTCTTGACGGCTGGCTGCTCTCCCTTTTTCCGTC
TCGCGTCCGTCGCAGGTGCAAGCAAGAAGATTGCACGAAACGGGCGTCGT
TCGGAGTGGACAACGCAAGCGACAAGATCGCAGAGTTCTGCTTCACGCAC
GCTCTGCCGGGGATGGTGAACGTGCGGAGCGCCAAGTGCGCCCAGGCCGG
CTGCAAGACACGGCCGGTCTTCGCCGCCCCGAACGCCGCCAGAGGCGAGT
TTTGCGCGGCGCACGCGAAGGGCGGCATGGTCGACGTGGTGAACAAGAAG
TGCAGGCAGCCCGGGGGGTGCCTCAAACAGCCGTCATACGGCATGGAGGG
GGACAAGAGGGCGTCGTTCTGCGCCGAGCACGCGCACCCCGGCCTGGTGA
ACATCGTCAGCCCTCGGTGTTCGCAGGAGGGGTGCCTCAAGCACGCGGCG
TACGGCCTACCGGGGACCAACAACGCGAGGACGTCTTGCCTCTCGCATGC
CGTGCAAGGGATGGTGCTGGTGGGCTCGCAGCCGGCCACGACGCCTCAAA
ACAGACGGCGGCGGATACAACAGCAGCAGCAACTGCTGCTGCAGCAAGTG
GGGGCGGCGGGGGTCATCTCCACGGAGCAACAGCAGCAAGTGGGGGCAGG
GGAGCTCATCCCCGCGAAGCAGCAGCAACAGCAACATCAAGTGGTAGCGG
CG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1994:20463..22214+

>mRNA_L-elsbetiae_contig1994.5979.1 ID=mRNA_L-elsbetiae_contig1994.5979.1|Name=mRNA_L-elsbetiae_contig1994.5979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2772bp|location=Sequence derived from alignment at L-elsbetiae_contig1994:20463..22214+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCAGCTTCCTTCGCCACCAGTCCAGGCCGCCGCGGCTGCTGCTGC
TGCGACGAGATACGGAGTGCCCCCGAGCGACCAGTGCGGTGCGGCTACGG
GCTGCCGGCAGTACCGCACCCACGCATGGCCAGCCACGCCACAGCAGCGT
CAATTTTGCGCGACCCACGCAGAACCGGGGATGGTGGACACGGGAAAGCG
ACTCTGCCGGCACCTGGGCTGCAACACGGAGGCCGCGTTCGGCGGCATAA
TTGGCGGGGTGGGCGGCAGCGGCAGTGGCAGCGGCGGCGGGGACGGGGAC
GGGAACGGGAACGACAACAGGCCCGTCCCGAAGTTGTGCGCGAAACACGC
GACGGGGGCTAACACTTTTTCGGGCGTTCGTGCGGTTTCATCGCCGCTGC
CGCGGAACAAATGCCAGTGGCCGGGCGACGAGTGCAAGATTCGACCCTTC
TACGGATTTCCTGGGTCGAGGAACCCCCAGTTCTGCGCGCGCCATTCCTA
CGACGGTCTGGTTGATCTCCGCGGCGCCGGCAAGAGCAGGAACGGTGGCG
GCACGACAAAGGCGAGTGGCGACGGCAACAACGGCAACAACGAGCCGGCG
GTGCCTAGCAAGAGCAGGCCGGGCGGCGGACGGTCGTGCGCCCACCCGGG
GTGCCCGACCAGACCCACGTACGGGGTGAAGGGAAATACGGCGCGAGAAT
GCTGTGCCAAGCACGCCAGGCCGGGGATGGTGGACGTGGCAACGAAAAGA
TGGCGCAGCTTCCTTCGCCACCAGTCCAGGCCGCCGCGGCTGCTGCTGCT
GCGACGAGATACGGAGTGCCCCCGAGCGACCAGTGCGGTGCGGCTACGGG
CTGCCGGCAGTACCGCACCCACGCATGGCCAGCCACGCCACAGCAGCGTC
AATTTTGCGCGACCCACGCAGAACCGGGGATGGTGGACACGGGAAAGCGA
CTCTGCCGGCACCTGGGCTGCAACACGGAGGCCGCGTTCGGCGGCATAAT
TGGCGGGGTGGGCGGCAGCGGCAGTGGCAGCGGCGGCGGGGACGGGGACG
GGAACGGGAACGACAACAGGCCCGTCCCGAAGTTGTGCGCGAAACACGCG
ACGGGGGCTAACACTTTTTCGGGCGTTCGTGCGGTTTCATCGCCGCTGCC
GCGGAACAAATGCCAGTGGCCGGGCGACGAGTGCAAGATTCGACCCTTCT
ACGGATTTCCTGGGTCGAGGAACCCCCAGTTCTGCGCGCGCCATTCCTAC
GACGGTCTGGTTGATCTCCGCGGCGCCGGCAAGAGCAGGAACGGTGGCGG
CACGACAAAGGCGAGTGGCGACGGCAACAACGGCAACAACGAGCCGGCGG
TGCCTAGCAAGAGCAGGCCGGGCGGCGGACGGTCGTGCGCCCACCCGGGG
TGCCCGACCAGACCCACGTACGGGGTGAAGGGAAATACGGCGCGAGAATG
CTGTGCCAAGCACGCCAGGCCGGGGATGGTGGACGTGGCAACGAAAAGGT
GCAAGCAAGAAGATTGCACGAAACGGGCGTCGTTCGGAGTGGACAACGCA
AGCGACAAGATCGCAGAGTTCTGCTTCACGCACGCTCTGCCGGGGATGGT
GAACGTGCGGAGCGCCAAGTGCGCCCAGGCCGGCTGCAAGACACGGCCGG
TCTTCGCCGCCCCGAACGCCGCCAGAGGCGAGTTTTGCGCGGCGCACGCG
AAGGGCGGCATGGTCGACGTGGTGAACAAGAAGTGCAGGCAGCCCGGGGG
GTGCCTCAAACAGCCGTCATACGGCATGGAGGGGGACAAGAGGGCGTCGT
TCTGCGCCGAGCACGCGCACCCCGGCCTGGTGAACATCGTCAGCCCTCGG
TGTTCGCAGGAGGGGTGCCTCAAGCACGCGGCGTACGGCCTACCGGGGAC
CAACAACGCGAGGACGTCTTGCCTCTCGCATGCCGTGCAAGGGATGGTGC
TGGTGGGCTCGCAGCCGGCCACGACGCCTCAAAACAGACGGCGGCGGATA
CAACAGCAGCAGCAACTGCTGCTGCAGCAAGTGGGGGCGGCGGGGGTCAT
CTCCACGGAGCAACAGCAGCAAGTGGGGGCAGGGGAGCTCATCCCCGCGA
AGCAGCAGCAACAGCAACATCAAGTGGTAGCGGCGGTGCAAGCAAGAAGA
TTGCACGAAACGGGCGTCGTTCGGAGTGGACAACGCAAGCGACAAGATCG
CAGAGTTCTGCTTCACGCACGCTCTGCCGGGGATGGTGAACGTGCGGAGC
GCCAAGTGCGCCCAGGCCGGCTGCAAGACACGGCCGGTCTTCGCCGCCCC
GAACGCCGCCAGAGGCGAGTTTTGCGCGGCGCACGCGAAGGGCGGCATGG
TCGACGTGGTGAACAAGAAGTGCAGGCAGCCCGGGGGGTGCCTCAAACAG
CCGTCATACGGCATGGAGGGGGACAAGAGGGCGTCGTTCTGCGCCGAGCA
CGCGCACCCCGGCCTGGTGAACATCGTCAGCCCTCGGTGTTCGCAGGAGG
GGTGCCTCAAGCACGCGGCGTACGGCCTACCGGGGACCAACAACGCGAGG
ACGTCTTGCCTCTCGCATGCCGTGCAAGGGATGGTGCTGGTGGGCTCGCA
GCCGGCCACGACGCCTCAAAACAGACGGCGGCGGATACAACAGCAGCAGC
AACTGCTGCTGCAGCAAGTGGGGGCGGCGGGGGTCATCTCCACGGAGCAA
CAGCAGCAAGTGGGGGCAGGGGAGCTCATCCCCGCGAAGCAGCAGCAACA
GCAACATCAAGTGGTAGCGGCG
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