mRNA_L-elsbetiae_contig19915.5969.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig19915.5969.1
Unique Name	mRNA_L-elsbetiae_contig19915.5969.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 250 bits (638), Expect = 1.560e-83
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 1

Query:   13 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    6 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142

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BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.820e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136

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BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 248 bits (633), Expect = 7.400e-83
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136

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BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 248 bits (634), Expect = 8.330e-83
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150

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BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 249 bits (637), Expect = 2.110e-82
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209

[Close]

BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot
Match: A0A836G1Z3_9HYME (Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=33213 RepID=A0A836G1Z3_9HYME)

HSP 1 Score: 247 bits (630), Expect = 2.430e-82
Identity = 133/140 (95.00%), Postives = 137/140 (97.86%), Query Frame = 1

Query:    4 FQSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            F  TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 FDFTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 140

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BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot
Match: F7BPK5_MONDO (Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7BPK5_MONDO)

HSP 1 Score: 246 bits (629), Expect = 3.330e-82
Identity = 132/138 (95.65%), Postives = 137/138 (99.28%), Query Frame = 1

Query:   10 STMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            STMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL+RKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 STMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLVRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139

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BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot
Match: UPI00115647F2 (histone H3-like n=1 Tax=Aedes albopictus TaxID=7160 RepID=UPI00115647F2)

HSP 1 Score: 248 bits (634), Expect = 4.050e-82
Identity = 133/140 (95.00%), Postives = 139/140 (99.29%), Query Frame = 1

Query:    4 FQSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            F++TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   58 FRATMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 197

[Close]

BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 4.280e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136

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BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 246 bits (627), Expect = 6.080e-82
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1

Query:   16 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 423
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig19915.5969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6V1P6C6_HETAK	1.560e-83	98.54	Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829...	[more]
W4GZ05_9STRA	1.820e-83	99.26	Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ...	[more]
A0A1Z5K8H0_FISSO	7.400e-83	98.53	Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI...	[more]
A0A7S1BJN3_9STRA	8.330e-83	98.53	Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A...	[more]
K0S7I6_THAOC	2.110e-82	99.26	Histone domain-containing protein n=8 Tax=Bacillar...	[more]
A0A836G1Z3_9HYME	2.430e-82	95.00	Histone H3 (Fragment) n=2 Tax=Bilateria TaxID=3321...	[more]
F7BPK5_MONDO	3.330e-82	95.65	Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7B...	[more]
UPI00115647F2	4.050e-82	95.00	histone H3-like n=1 Tax=Aedes albopictus TaxID=716...	[more]
D7G4I9_ECTSI	4.280e-82	98.53	Similar to histone H3.2 n=2 Tax=PX clade TaxID=569...	[more]
A7RJG4_NEMVE	6.080e-82	97.06	Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig19915	contig	L-elsbetiae_contig19915:846..1271 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	256.5
Seed ortholog evalue	6.9e-66
Seed eggNOG ortholog	2880.D7FWI7
KEGG ko	ko:K11253
KEGG Pathway	ko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting category	other localisation
GOs	GO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG1745@2759
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036,ko04147
Exons	1
Model size	426
Cds size	411
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815824.0842433-UTR-L-elsbetiae_contig19915:845..860	1622815824.0842433-UTR-L-elsbetiae_contig19915:845..860	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig19915 846..860 +
1691683126.6521406-UTR-L-elsbetiae_contig19915:845..860	1691683126.6521406-UTR-L-elsbetiae_contig19915:845..860	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig19915 846..860 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815824.094275-CDS-L-elsbetiae_contig19915:860..1271	1622815824.094275-CDS-L-elsbetiae_contig19915:860..1271	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig19915 861..1271 +
1691683126.732832-CDS-L-elsbetiae_contig19915:860..1271	1691683126.732832-CDS-L-elsbetiae_contig19915:860..1271	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig19915 861..1271 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig19915.5969.1	prot_L-elsbetiae_contig19915.5969.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig19915 861..1271 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig19915:846..1271+
coding sequence from alignment at L-elsbetiae_contig19915:846..1271+

protein sequence of mRNA_L-elsbetiae_contig19915.5969.1

>prot_L-elsbetiae_contig19915.5969.1 ID=prot_L-elsbetiae_contig19915.5969.1|Name=mRNA_L-elsbetiae_contig19915.5969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*

mRNA from alignment at L-elsbetiae_contig19915:846..1271+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig19915.5969.1 ID=mRNA_L-elsbetiae_contig19915.5969.1|Name=mRNA_L-elsbetiae_contig19915.5969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig19915:846..1271+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTTTCAAAGCACCATGGCTCGCACCAAGCAGACCGCCCGTAAGTCCAC
CGGAGGCAAGGCCCCCCGCAAGCAGCTGGCCACCAAGGCGGCACGCAAGT
CCGCGCCGGCCACCGGCGGAGTGAAGAAGCCCCACCGCTACAGGCCCGGC
ACCGTCGCCCTCCGCGAGATCCGTCGCTACCAGAAGTCGACCGAGCTGCT
GATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCCCAGGACT
TCAAGAGCGACCTCCGCTTCCAGGGCTCCGCCGTGCTGGCCCTCCAGGAG
GCCGCCGAGGCCTACCTTGTGGGCCTGTTCGAGGACACCAACCTGTGCGC
CATCCACGCCAAGCGCGTGACCATCATGCCCAAGGACATCCAGCTGGCCC
GCCGCATCCGGGGCGAGCGCTCTTAG

Coding sequence (CDS) from alignment at L-elsbetiae_contig19915:846..1271+

>mRNA_L-elsbetiae_contig19915.5969.1 ID=mRNA_L-elsbetiae_contig19915.5969.1|Name=mRNA_L-elsbetiae_contig19915.5969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig19915:846..1271+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCGCACCAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTGGCCACCAAGGCGGCACGCAAGTCCGCGCCGGCCACCG
GCGGAGTGAAGAAGCCCCACCGCTACAGGCCCGGCACCGTCGCCCTCCGC
GAGATCCGTCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCC
GTTCCAGCGCCTGGTGCGCGAGATCGCCCAGGACTTCAAGAGCGACCTCC
GCTTCCAGGGCTCCGCCGTGCTGGCCCTCCAGGAGGCCGCCGAGGCCTAC
CTTGTGGGCCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCG
CGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGGGGCG
AGCGCTCTTAGATGGCTCGCACCAAGCAGACCGCCCGTAAGTCCACCGGA
GGCAAGGCCCCCCGCAAGCAGCTGGCCACCAAGGCGGCACGCAAGTCCGC
GCCGGCCACCGGCGGAGTGAAGAAGCCCCACCGCTACAGGCCCGGCACCG
TCGCCCTCCGCGAGATCCGTCGCTACCAGAAGTCGACCGAGCTGCTGATC
CGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCCCAGGACTTCAA
GAGCGACCTCCGCTTCCAGGGCTCCGCCGTGCTGGCCCTCCAGGAGGCCG
CCGAGGCCTACCTTGTGGGCCTGTTCGAGGACACCAACCTGTGCGCCATC
CACGCCAAGCGCGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCG
CATCCGGGGCGAGCGCTCTTAG