mRNA_L-elsbetiae_contig199.5958.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig199.5958.1
Unique NamemRNA_L-elsbetiae_contig199.5958.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig199.5958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig199contigL-elsbetiae_contig199:11312..11992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size681
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig199.5958.1prot_L-elsbetiae_contig199.5958.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig199 11428..11772 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.7571807-UTR-L-elsbetiae_contig199:11311..114271622815822.7571807-UTR-L-elsbetiae_contig199:11311..11427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig199 11312..11427 +
1691683125.7018683-UTR-L-elsbetiae_contig199:11311..114271691683125.7018683-UTR-L-elsbetiae_contig199:11311..11427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig199 11312..11427 +
1622815822.7769787-UTR-L-elsbetiae_contig199:11772..119921622815822.7769787-UTR-L-elsbetiae_contig199:11772..11992Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig199 11773..11992 +
1691683125.7222812-UTR-L-elsbetiae_contig199:11772..119921691683125.7222812-UTR-L-elsbetiae_contig199:11772..11992Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig199 11773..11992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.7672782-CDS-L-elsbetiae_contig199:11427..117721622815822.7672782-CDS-L-elsbetiae_contig199:11427..11772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig199 11428..11772 +
1691683125.713638-CDS-L-elsbetiae_contig199:11427..117721691683125.713638-CDS-L-elsbetiae_contig199:11427..11772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig199 11428..11772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig199.5958.1

>prot_L-elsbetiae_contig199.5958.1 ID=prot_L-elsbetiae_contig199.5958.1|Name=mRNA_L-elsbetiae_contig199.5958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MCTSQQGALHFRRINALSEVNTTPQMVSASYFSSFAVYVGSRFVTKFATA
TISEAPKGNGVTTATTKNINPRDYPKRRHQFWVCYPSFTSPYSQAAAPNA
NRTNHLSLPIHTQK*
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mRNA from alignment at L-elsbetiae_contig199:11312..11992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig199.5958.1 ID=mRNA_L-elsbetiae_contig199.5958.1|Name=mRNA_L-elsbetiae_contig199.5958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=681bp|location=Sequence derived from alignment at L-elsbetiae_contig199:11312..11992+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCGAACGAGATTATGGCAAGCACACCCCGTACACGCTGCGTACATTCG
CGCTCGTGTCGTGCGTCAGAGTCAGTCACTCTTGTCTTCCAATAACTCAC
GCATGTTGCTCAATACATGTGTACCTCCCAGCAAGGTGCGTTGCACTTTC
GACGAATTAATGCCTTGTCAGAGGTAAATACCACACCCCAGATGGTCTCA
GCTTCGTATTTTAGCTCTTTCGCCGTGTATGTTGGCTCCAGGTTTGTCAC
GAAATTCGCAACAGCCACCATTTCAGAGGCCCCGAAAGGCAACGGCGTTA
CTACCGCCACTACAAAGAACATAAACCCACGAGATTATCCAAAAAGAAGG
CACCAATTCTGGGTTTGCTACCCCTCCTTCACCTCCCCGTATTCGCAGGC
AGCAGCGCCCAACGCGAATCGAACGAACCATCTGTCGCTGCCAATACACA
CACAAAAATGAAGCACAAATCGGATGGCACGTTCGTCCACCACGTGAGGC
CTCAAGCCTCCGGCCACAATCACCGCCCTCGGGAATGAACATTCGCCTTC
CTCCGACGCGGCACACGGGATGAGGTCCACCCTTACCCTCGTCTTCGACC
CGCGTCGCCAACCGGAAGTTCCACCTTGTCGCCATCCGCCCAAGTCGCGT
CCCCCGGCTCCGCAACATCCTTCTCCCCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig199:11312..11992+

>mRNA_L-elsbetiae_contig199.5958.1 ID=mRNA_L-elsbetiae_contig199.5958.1|Name=mRNA_L-elsbetiae_contig199.5958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig199:11312..11992+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTACCTCCCAGCAAGGTGCGTTGCACTTTCGACGAATTAATGCCTT
GTCAGAGGTAAATACCACACCCCAGATGGTCTCAGCTTCGTATTTTAGCT
CTTTCGCCGTGTATGTTGGCTCCAGGTTTGTCACGAAATTCGCAACAGCC
ACCATTTCAGAGGCCCCGAAAGGCAACGGCGTTACTACCGCCACTACAAA
GAACATAAACCCACGAGATTATCCAAAAAGAAGGCACCAATTCTGGGTTT
GCTACCCCTCCTTCACCTCCCCGTATTCGCAGGCAGCAGCGCCCAACGCG
AATCGAACGAACCATCTGTCGCTGCCAATACACACACAAAAATGAATGTG
TACCTCCCAGCAAGGTGCGTTGCACTTTCGACGAATTAATGCCTTGTCAG
AGGTAAATACCACACCCCAGATGGTCTCAGCTTCGTATTTTAGCTCTTTC
GCCGTGTATGTTGGCTCCAGGTTTGTCACGAAATTCGCAACAGCCACCAT
TTCAGAGGCCCCGAAAGGCAACGGCGTTACTACCGCCACTACAAAGAACA
TAAACCCACGAGATTATCCAAAAAGAAGGCACCAATTCTGGGTTTGCTAC
CCCTCCTTCACCTCCCCGTATTCGCAGGCAGCAGCGCCCAACGCGAATCG
AACGAACCATCTGTCGCTGCCAATACACACACAAAAATGA
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