mRNA_L-elsbetiae_contig1988.5952.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1988.5952.1
Unique NamemRNA_L-elsbetiae_contig1988.5952.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: D7FZY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY1_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.410e-61
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 1
Query:    1 LPCRRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRADLTGRYPKRDHAPLAAGE 297
            L C+RVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLE VPA+++GGSPLVFASRSHRDFALNHW+D RLR DL+GRY ++DHAPLAAG+
Sbjct:   29 LGCQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLSGRYREKDHAPLAAGD 127          
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A6H5KL54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL54_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 4.790e-58
Identity = 83/99 (83.84%), Postives = 93/99 (93.94%), Query Frame = 1
Query:    1 LPCRRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRADLTGRYPKRDHAPLAAGE 297
            L C+R+RLYQDSTFCKRPGDG TRWHSDLNMAPLDCNDFVTAWIPLE +PA+++GGSPLVFASRSHRDFALNHW+D RLR DLTGRY ++DHAPLAAG+
Sbjct:  218 LGCQRLRLYQDSTFCKRPGDGQTRWHSDLNMAPLDCNDFVTAWIPLEEIPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGD 316          
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A7S1NK13_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NK13_9EUGL)

HSP 1 Score: 129 bits (324), Expect = 1.710e-35
Identity = 59/94 (62.77%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   16 VRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRADLTGRYPKRDHAPLAAGE 297
            VRLYQDS F KRPGDGPT WHSDLNMAP D NDFVT WIPL+ +P   +GGS L FASRSHRD AL  W DPR   DL+ RY    +     G+
Sbjct:   49 VRLYQDSVFAKRPGDGPTEWHSDLNMAPFDTNDFVTFWIPLQPIPYSDEGGSSLCFASRSHRDVALPFWSDPRT-TDLSDRYEVETYGEFKVGD 141          
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: R1DNY2_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNY2_EMIHU)

HSP 1 Score: 130 bits (327), Expect = 1.130e-34
Identity = 66/101 (65.35%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 LPCRRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQ-DPRLRADLTGR-YPKRDHAPLAAGE 297
            L   RVRLYQDS F KRPGDGPT WHSDL+MAPLD N FVT W+PL  V A  DGGS LVFAS SHRD ALN W  DPR   D + R YP RD   L AG+
Sbjct:  112 LGVERVRLYQDSYFLKRPGDGPTHWHSDLSMAPLDTNSFVTCWLPLHDVAAPDDGGSSLVFASGSHRDVALNFWHGDPRRPVDASTRGYPLRDGGALRAGD 212          
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A835YLJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ4_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.960e-34
Identity = 63/121 (52.07%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 LPCRRVRLYQDSTFCKRPGDGPTRWHS----------------------DLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRADLTGRYPKRDHAPLAAGE 297
            L C+ VR+YQDSTF KR GDGPT WHS                      DLNMAP D ND VTAW+PL  + A +DGGS LVFASRSHRDFALN+WQDP  + DL+ RY +     +  G+
Sbjct:  157 LGCQAVRVYQDSTFVKRSGDGPTNWHSGINAQLWAAAAAPLRRHERNRGDLNMAPFDTNDMVTAWLPLTHIAACEDGGSGLVFASRSHRDFALNYWQDPHAQEDLSERYDETPQLAMEPGD 277          
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A482S616_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S616_9ARCH)

HSP 1 Score: 127 bits (318), Expect = 2.600e-33
Identity = 60/94 (63.83%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   16 VRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRADLTGRYPKRDHAPLAAGE 297
            VRLYQDS F KRPGDG T WHSDLNMAP D NDF+T WIPL +VPA +DGG+ L FAS SHRDFAL++W D R  A+L GRY   D      G+
Sbjct:  172 VRLYQDSLFVKRPGDGATCWHSDLNMAPFDTNDFLTCWIPLVSVPAVEDGGTGLSFASASHRDFALSYWYDARS-AELDGRYALHDSDAFKVGD 264          
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A7S0QAH8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QAH8_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 2.860e-31
Identity = 60/97 (61.86%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   13 RVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQ-DPRLRADLTGR-YPKRDHAPLAAGE 297
            R+RLYQDS F KR GDGPT WHSDL MAPLD N FVTAWIPL+ VP    GGS LVFA  SHRD AL  W  DPR+  DL+GR Y + +   +A G+
Sbjct:   94 RLRLYQDSLFVKRVGDGPTHWHSDLAMAPLDTNAFVTAWIPLQPVPPPNKGGSALVFAGGSHRDVALPFWHGDPRVCEDLSGRGYTEHEPEAMAVGD 190          
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: I2CS45_NANGC (Phytanoyl-dioxygenase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS45_NANGC)

HSP 1 Score: 117 bits (292), Expect = 4.930e-31
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   13 RVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRL--RADLTGRYPKRDHAPLAAGE 297
            RVRLYQDSTF KR GDGPT WHSDL+MAP   N+ VT W+PL  +P   +GG+ L+FAS SHRDFAL+ W+D +   R DL GRY    +  +  G+
Sbjct:   46 RVRLYQDSTFLKRVGDGPTLWHSDLSMAPFHTNEAVTMWLPLTPIPPEDEGGTGLLFASGSHRDFALSFWEDAKGGGRRDLEGRYALDSYGRMEVGD 142          
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A7S2SR24_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR24_9STRA)

HSP 1 Score: 121 bits (303), Expect = 7.000e-31
Identity = 56/84 (66.67%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   13 RVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRA-DLTGRY 261
            RVRLYQDS F KRPGDG TRWHSDL+MAP D ND VT WIPL+ VPA++DGG+ L FAS SHRDFAL  W  P     D + RY
Sbjct:  201 RVRLYQDSMFLKRPGDGATRWHSDLHMAPFDTNDLVTCWIPLDPVPAQEDGGTGLTFASGSHRDFALAFWSRPHETGKDFSARY 284          
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: W7T009_9STRA (Phytanoyl-CoA dioxygenase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T009_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.770e-31
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   13 RVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRL--RADLTGRYPKRDHAPLAAGE 297
            RVRLYQDSTF KR GDGPT WHSDL+MAP   N+ VT W+PL  +P   +GG+ L+FAS SHRDFAL+ W+D +   R DL GRY    +  +  G+
Sbjct:   17 RVRLYQDSTFLKRVGDGPTLWHSDLSMAPFHTNEAVTMWLPLTPIPPEDEGGTGLLFASGSHRDFALSFWEDAKGGGRRDLEGRYALDSYGRMEVGD 113          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZY1_ECTSI1.410e-6185.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL54_9PHAE4.790e-5883.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1NK13_9EUGL1.710e-3562.77Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
R1DNY2_EMIHU1.130e-3465.35Uncharacterized protein n=3 Tax=Emiliania huxleyi ... [more]
A0A835YLJ4_9STRA6.960e-3452.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482S616_9ARCH2.600e-3363.83Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0QAH8_9EUKA2.860e-3161.86Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
I2CS45_NANGC4.930e-3155.67Phytanoyl-dioxygenase (Fragment) n=1 Tax=Nannochlo... [more]
A0A7S2SR24_9STRA7.000e-3166.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7T009_9STRA8.770e-3155.67Phytanoyl-CoA dioxygenase (Fragment) n=1 Tax=Nanno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1988contigL-elsbetiae_contig1988:21012..22022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.3
Seed ortholog evalue1.4e-47
Seed eggNOG ortholog2880.D7FZY1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phytanoyl-CoA dioxygenase (PhyH)
EggNOG OGs29XGT@1,2RXRT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.5657406-CDS-L-elsbetiae_contig1988:21011..211171622815822.5657406-CDS-L-elsbetiae_contig1988:21011..21117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1988 21012..21117 -
1691683125.619175-CDS-L-elsbetiae_contig1988:21011..211171691683125.619175-CDS-L-elsbetiae_contig1988:21011..21117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1988 21012..21117 -
1622815822.577024-CDS-L-elsbetiae_contig1988:21831..220221622815822.577024-CDS-L-elsbetiae_contig1988:21831..22022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1988 21832..22022 -
1691683125.6314616-CDS-L-elsbetiae_contig1988:21831..220221691683125.6314616-CDS-L-elsbetiae_contig1988:21831..22022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1988 21832..22022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1988.5952.1prot_L-elsbetiae_contig1988.5952.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1988 21012..22022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1988.5952.1

>prot_L-elsbetiae_contig1988.5952.1 ID=prot_L-elsbetiae_contig1988.5952.1|Name=mRNA_L-elsbetiae_contig1988.5952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
LPCRRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVP
ARKDGGSPLVFASRSHRDFALNHWQDPRLRADLTGRYPKRDHAPLAAGE
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mRNA from alignment at L-elsbetiae_contig1988:21012..22022-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1988.5952.1 ID=mRNA_L-elsbetiae_contig1988.5952.1|Name=mRNA_L-elsbetiae_contig1988.5952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1011bp|location=Sequence derived from alignment at L-elsbetiae_contig1988:21012..22022- (Laminarionema elsbetiae ELsaHSoW15)
CTTCCTTGTCGCAGGGTGAGGCTCTACCAAGACTCGACCTTCTGCAAGCG GCCGGGGGACGGTCCCACGAGGTGGCACTCGGACCTCAACATGGCGCCTC TGGACTGCAACGACTTCGTGACCGCGTGGATACCGCTGGAGGCGGTGCCG GCCAGGAAGGACGGCGGCTCCCCCCTCGTGTTCGCGAGCAGGTCGGGCTC GTTCGCGTACCGTATACGACACAAGATAACACACACCCTGGATCAATGTT CAAAGCTCAAGTACTCCTCCACAGCCAGAAGGGTGTCAGTCCCGAAAAGT GCGGCGTTGGGAAGATCTCATCAAGAACTGCCCGAAAACGTGTCGTTTGG TACTAGAATCATACTCGTTGCGGAGAAACCGAGCTTTGAAAATCGGCCCA GGGCGTGTGTTATCTTGTGTCGTACACGGCGGTAGTGTGGTTATTGTGTA CTGCTGTGCTAGATACATGTGATTGTTGTTAGAAATATTTATTAAAATTA TGGCGGAGTCCTTTGTTTCGTTTGCCATCCGACTATTACAGCAGATTCTG CCAAATATAAAACGCACAAACATAGGTATTTTAGTTTGCATTCTTGATCC GTACATATACTGACGGATAAGCACAAAAATAGCCTGGCATACGGAAAAAC GTCTGTTGAAAAACAGACAGTAAATGCAACTGTCCTTATTTGGGAGGGCG AGGCTGGGTATCGCTTGCACCAGAAACGCAGAGGTCAATACACATGTAAT GTGCCCACGCACGCAAGGGCCCCCACGCACCATAACCCTTGCAGGTTTGC GTTCCTTATCCGCGGGCCTACCTGCGAATACGCATATACAGTACCCGTTT TTTTGCCCGTAGGTCTCCGTAGATCTAACCGTTCGTATCTGAACACCTCG AGCAGGTCACATCGTGATTTCGCCCTCAACCACTGGCAAGACCCGCGGTT GCGGGCAGACTTGACGGGACGGTACCCGAAGAGGGACCACGCCCCCCTGG CTGCCGGTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1988:21012..22022-

>mRNA_L-elsbetiae_contig1988.5952.1 ID=mRNA_L-elsbetiae_contig1988.5952.1|Name=mRNA_L-elsbetiae_contig1988.5952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig1988:21012..22022- (Laminarionema elsbetiae ELsaHSoW15)
CTTCCTTGTCGCAGGGTGAGGCTCTACCAAGACTCGACCTTCTGCAAGCG
GCCGGGGGACGGTCCCACGAGGTGGCACTCGGACCTCAACATGGCGCCTC
TGGACTGCAACGACTTCGTGACCGCGTGGATACCGCTGGAGGCGGTGCCG
GCCAGGAAGGACGGCGGCTCCCCCCTCGTGTTCGCGAGCAGCTTCCTTGT
CGCAGGGTGAGGCTCTACCAAGACTCGACCTTCTGCAAGCGGCCGGGGGA
CGGTCCCACGAGGTGGCACTCGGACCTCAACATGGCGCCTCTGGACTGCA
ACGACTTCGTGACCGCGTGGATACCGCTGGAGGCGGTGCCGGCCAGGAAG
GACGGCGGCTCCCCCCTCGTGTTCGCGAGCAGGTCACATCGTGATTTCGC
CCTCAACCACTGGCAAGACCCGCGGTTGCGGGCAGACTTGACGGGACGGT
ACCCGAAGAGGGACCACGCCCCCCTGGCTGCCGGTGAGGTCACATCGTGA
TTTCGCCCTCAACCACTGGCAAGACCCGCGGTTGCGGGCAGACTTGACGG
GACGGTACCCGAAGAGGGACCACGCCCCCCTGGCTGCCGGTGAG
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