mRNA_L-elsbetiae_contig1988.5952.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: D7FZY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY1_ECTSI) HSP 1 Score: 195 bits (495), Expect = 1.410e-61 Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 1 Query: 1 LPCRRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRADLTGRYPKRDHAPLAAGE 297 L C+RVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLE VPA+++GGSPLVFASRSHRDFALNHW+D RLR DL+GRY ++DHAPLAAG+ Sbjct: 29 LGCQRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEEVPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLSGRYREKDHAPLAAGD 127
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A6H5KL54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL54_9PHAE) HSP 1 Score: 192 bits (487), Expect = 4.790e-58 Identity = 83/99 (83.84%), Postives = 93/99 (93.94%), Query Frame = 1 Query: 1 LPCRRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRADLTGRYPKRDHAPLAAGE 297 L C+R+RLYQDSTFCKRPGDG TRWHSDLNMAPLDCNDFVTAWIPLE +PA+++GGSPLVFASRSHRDFALNHW+D RLR DLTGRY ++DHAPLAAG+ Sbjct: 218 LGCQRLRLYQDSTFCKRPGDGQTRWHSDLNMAPLDCNDFVTAWIPLEEIPAKREGGSPLVFASRSHRDFALNHWRDSRLREDLTGRYREKDHAPLAAGD 316
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A7S1NK13_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NK13_9EUGL) HSP 1 Score: 129 bits (324), Expect = 1.710e-35 Identity = 59/94 (62.77%), Postives = 65/94 (69.15%), Query Frame = 1 Query: 16 VRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRADLTGRYPKRDHAPLAAGE 297 VRLYQDS F KRPGDGPT WHSDLNMAP D NDFVT WIPL+ +P +GGS L FASRSHRD AL W DPR DL+ RY + G+ Sbjct: 49 VRLYQDSVFAKRPGDGPTEWHSDLNMAPFDTNDFVTFWIPLQPIPYSDEGGSSLCFASRSHRDVALPFWSDPRT-TDLSDRYEVETYGEFKVGD 141
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: R1DNY2_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNY2_EMIHU) HSP 1 Score: 130 bits (327), Expect = 1.130e-34 Identity = 66/101 (65.35%), Postives = 70/101 (69.31%), Query Frame = 1 Query: 1 LPCRRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQ-DPRLRADLTGR-YPKRDHAPLAAGE 297 L RVRLYQDS F KRPGDGPT WHSDL+MAPLD N FVT W+PL V A DGGS LVFAS SHRD ALN W DPR D + R YP RD L AG+ Sbjct: 112 LGVERVRLYQDSYFLKRPGDGPTHWHSDLSMAPLDTNSFVTCWLPLHDVAAPDDGGSSLVFASGSHRDVALNFWHGDPRRPVDASTRGYPLRDGGALRAGD 212
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A835YLJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ4_9STRA) HSP 1 Score: 129 bits (323), Expect = 6.960e-34 Identity = 63/121 (52.07%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 1 LPCRRVRLYQDSTFCKRPGDGPTRWHS----------------------DLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRADLTGRYPKRDHAPLAAGE 297 L C+ VR+YQDSTF KR GDGPT WHS DLNMAP D ND VTAW+PL + A +DGGS LVFASRSHRDFALN+WQDP + DL+ RY + + G+ Sbjct: 157 LGCQAVRVYQDSTFVKRSGDGPTNWHSGINAQLWAAAAAPLRRHERNRGDLNMAPFDTNDMVTAWLPLTHIAACEDGGSGLVFASRSHRDFALNYWQDPHAQEDLSERYDETPQLAMEPGD 277
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A482S616_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S616_9ARCH) HSP 1 Score: 127 bits (318), Expect = 2.600e-33 Identity = 60/94 (63.83%), Postives = 68/94 (72.34%), Query Frame = 1 Query: 16 VRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRADLTGRYPKRDHAPLAAGE 297 VRLYQDS F KRPGDG T WHSDLNMAP D NDF+T WIPL +VPA +DGG+ L FAS SHRDFAL++W D R A+L GRY D G+ Sbjct: 172 VRLYQDSLFVKRPGDGATCWHSDLNMAPFDTNDFLTCWIPLVSVPAVEDGGTGLSFASASHRDFALSYWYDARS-AELDGRYALHDSDAFKVGD 264
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A7S0QAH8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QAH8_9EUKA) HSP 1 Score: 120 bits (302), Expect = 2.860e-31 Identity = 60/97 (61.86%), Postives = 68/97 (70.10%), Query Frame = 1 Query: 13 RVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQ-DPRLRADLTGR-YPKRDHAPLAAGE 297 R+RLYQDS F KR GDGPT WHSDL MAPLD N FVTAWIPL+ VP GGS LVFA SHRD AL W DPR+ DL+GR Y + + +A G+ Sbjct: 94 RLRLYQDSLFVKRVGDGPTHWHSDLAMAPLDTNAFVTAWIPLQPVPPPNKGGSALVFAGGSHRDVALPFWHGDPRVCEDLSGRGYTEHEPEAMAVGD 190
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: I2CS45_NANGC (Phytanoyl-dioxygenase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS45_NANGC) HSP 1 Score: 117 bits (292), Expect = 4.930e-31 Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 1 Query: 13 RVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRL--RADLTGRYPKRDHAPLAAGE 297 RVRLYQDSTF KR GDGPT WHSDL+MAP N+ VT W+PL +P +GG+ L+FAS SHRDFAL+ W+D + R DL GRY + + G+ Sbjct: 46 RVRLYQDSTFLKRVGDGPTLWHSDLSMAPFHTNEAVTMWLPLTPIPPEDEGGTGLLFASGSHRDFALSFWEDAKGGGRRDLEGRYALDSYGRMEVGD 142
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: A0A7S2SR24_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR24_9STRA) HSP 1 Score: 121 bits (303), Expect = 7.000e-31 Identity = 56/84 (66.67%), Postives = 62/84 (73.81%), Query Frame = 1 Query: 13 RVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRLRA-DLTGRY 261 RVRLYQDS F KRPGDG TRWHSDL+MAP D ND VT WIPL+ VPA++DGG+ L FAS SHRDFAL W P D + RY Sbjct: 201 RVRLYQDSMFLKRPGDGATRWHSDLHMAPFDTNDLVTCWIPLDPVPAQEDGGTGLTFASGSHRDFALAFWSRPHETGKDFSARY 284
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Match: W7T009_9STRA (Phytanoyl-CoA dioxygenase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T009_9STRA) HSP 1 Score: 117 bits (292), Expect = 8.770e-31 Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 1 Query: 13 RVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPARKDGGSPLVFASRSHRDFALNHWQDPRL--RADLTGRYPKRDHAPLAAGE 297 RVRLYQDSTF KR GDGPT WHSDL+MAP N+ VT W+PL +P +GG+ L+FAS SHRDFAL+ W+D + R DL GRY + + G+ Sbjct: 17 RVRLYQDSTFLKRVGDGPTLWHSDLSMAPFHTNEAVTMWLPLTPIPPEDEGGTGLLFASGSHRDFALSFWEDAKGGGRRDLEGRYALDSYGRMEVGD 113 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1988.5952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1988.5952.1 >prot_L-elsbetiae_contig1988.5952.1 ID=prot_L-elsbetiae_contig1988.5952.1|Name=mRNA_L-elsbetiae_contig1988.5952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp LPCRRVRLYQDSTFCKRPGDGPTRWHSDLNMAPLDCNDFVTAWIPLEAVPback to top mRNA from alignment at L-elsbetiae_contig1988:21012..22022- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1988.5952.1 ID=mRNA_L-elsbetiae_contig1988.5952.1|Name=mRNA_L-elsbetiae_contig1988.5952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1011bp|location=Sequence derived from alignment at L-elsbetiae_contig1988:21012..22022- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1988:21012..22022- >mRNA_L-elsbetiae_contig1988.5952.1 ID=mRNA_L-elsbetiae_contig1988.5952.1|Name=mRNA_L-elsbetiae_contig1988.5952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig1988:21012..22022- (Laminarionema elsbetiae ELsaHSoW15)back to top |