mRNA_L-elsbetiae_contig1988.5951.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1988.5951.1
Unique NamemRNA_L-elsbetiae_contig1988.5951.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1988.5951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1988contigL-elsbetiae_contig1988:19486..20203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size718
Cds size462
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.3280911-UTR-L-elsbetiae_contig1988:19485..197411622815822.3280911-UTR-L-elsbetiae_contig1988:19485..19741Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1988 19486..19741 +
1691683125.4345703-UTR-L-elsbetiae_contig1988:19485..197411691683125.4345703-UTR-L-elsbetiae_contig1988:19485..19741Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1988 19486..19741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.3392222-CDS-L-elsbetiae_contig1988:19741..202031622815822.3392222-CDS-L-elsbetiae_contig1988:19741..20203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1988 19742..20203 +
1691683125.4434388-CDS-L-elsbetiae_contig1988:19741..202031691683125.4434388-CDS-L-elsbetiae_contig1988:19741..20203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1988 19742..20203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1988.5951.1prot_L-elsbetiae_contig1988.5951.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1988 19742..20203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1988.5951.1

>prot_L-elsbetiae_contig1988.5951.1 ID=prot_L-elsbetiae_contig1988.5951.1|Name=mRNA_L-elsbetiae_contig1988.5951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MTTKAATMATSTSAAHERARVGTSAAHERGRVGIAERHTKTIASQLVHAT
CRSRNTREPGTKKRAQRTRSESGRVCREKSITSGRLKGSYALPSNCCMSF
NLYVSVHCRIKLRMHVACGHFSLNLHLPDGDKQKLKLTCAPTIVACTGQA
CTYY
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mRNA from alignment at L-elsbetiae_contig1988:19486..20203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1988.5951.1 ID=mRNA_L-elsbetiae_contig1988.5951.1|Name=mRNA_L-elsbetiae_contig1988.5951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=718bp|location=Sequence derived from alignment at L-elsbetiae_contig1988:19486..20203+ (Laminarionema elsbetiae ELsaHSoW15)
TCCACGACTTTTTTCACCAGGCTGGGCGCAAACGGCTGAGGTTTAGCTAG
TCAAAAAAAGAACGGAAGAAAACAAATCGGGTGCTTTTGAGTGCAAGATA
GTCGTAGTTAGTGTGGGCTGTACTGCGGTGGGTTGGTATGCGTGGGTCCA
AGTCTGGACTTTGTCGGATGACAAGCTTCACGCTGGGCCGGCAAGAAATA
ATCAAGAGGACGTCGAGAGATGGGGATACTTTTCGATGTGGTGAAAAGCA
TCGGCGATGACGACGAAGGCGGCGACAATGGCGACCTCCACTAGTGCAGC
ACATGAAAGGGCGAGGGTGGGCACTAGTGCAGCACATGAAAGGGGGAGGG
TGGGTATCGCAGAGAGGCACACGAAAACAATTGCTTCCCAGTTGGTACAT
GCCACCTGCAGATCAAGAAACACAAGAGAACCCGGGACGAAAAAACGGGC
ACAGAGAACACGCTCGGAGAGCGGGCGGGTGTGTAGGGAAAAATCAATCA
CGAGCGGGCGCTTGAAGGGATCATATGCCCTTCCCAGCAATTGCTGCATG
TCATTCAATCTTTATGTATCGGTGCATTGTAGGATCAAGCTTCGTATGCA
CGTTGCGTGTGGGCATTTTAGTCTGAATCTGCACTTACCGGATGGCGACA
AACAAAAACTGAAACTAACATGTGCACCCACTATTGTGGCATGTACGGGT
CAAGCGTGTACATATTAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1988:19486..20203+

>mRNA_L-elsbetiae_contig1988.5951.1 ID=mRNA_L-elsbetiae_contig1988.5951.1|Name=mRNA_L-elsbetiae_contig1988.5951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig1988:19486..20203+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGACGAAGGCGGCGACAATGGCGACCTCCACTAGTGCAGCACATGA
AAGGGCGAGGGTGGGCACTAGTGCAGCACATGAAAGGGGGAGGGTGGGTA
TCGCAGAGAGGCACACGAAAACAATTGCTTCCCAGTTGGTACATGCCACC
TGCAGATCAAGAAACACAAGAGAACCCGGGACGAAAAAACGGGCACAGAG
AACACGCTCGGAGAGCGGGCGGGTGTGTAGGGAAAAATCAATCACGAGCG
GGCGCTTGAAGGGATCATATGCCCTTCCCAGCAATTGCTGCATGTCATTC
AATCTTTATGTATCGGTGCATTGTAGGATCAAGCTTCGTATGCACGTTGC
GTGTGGGCATTTTAGTCTGAATCTGCACTTACCGGATGGCGACAAACAAA
AACTGAAACTAACATGTGCACCCACTATTGTGGCATGTACGGGTCAAGCG
TGTACATATTATATGACGACGAAGGCGGCGACAATGGCGACCTCCACTAG
TGCAGCACATGAAAGGGCGAGGGTGGGCACTAGTGCAGCACATGAAAGGG
GGAGGGTGGGTATCGCAGAGAGGCACACGAAAACAATTGCTTCCCAGTTG
GTACATGCCACCTGCAGATCAAGAAACACAAGAGAACCCGGGACGAAAAA
ACGGGCACAGAGAACACGCTCGGAGAGCGGGCGGGTGTGTAGGGAAAAAT
CAATCACGAGCGGGCGCTTGAAGGGATCATATGCCCTTCCCAGCAATTGC
TGCATGTCATTCAATCTTTATGTATCGGTGCATTGTAGGATCAAGCTTCG
TATGCACGTTGCGTGTGGGCATTTTAGTCTGAATCTGCACTTACCGGATG
GCGACAAACAAAAACTGAAACTAACATGTGCACCCACTATTGTGGCATGT
ACGGGTCAAGCGTGTACATATTAT
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