mRNA_L-elsbetiae_contig1988.5950.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1988.5950.1
Unique NamemRNA_L-elsbetiae_contig1988.5950.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1988.5950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1988contigL-elsbetiae_contig1988:15435..16448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size535
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1988.5950.1prot_L-elsbetiae_contig1988.5950.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1988 15435..15878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.2720954-CDS-L-elsbetiae_contig1988:15434..158781622815822.2720954-CDS-L-elsbetiae_contig1988:15434..15878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1988 15435..15878 -
1691683125.4056265-CDS-L-elsbetiae_contig1988:15434..158781691683125.4056265-CDS-L-elsbetiae_contig1988:15434..15878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1988 15435..15878 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.2835479-UTR-L-elsbetiae_contig1988:15878..159061622815822.2835479-UTR-L-elsbetiae_contig1988:15878..15906Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1988 15879..15906 -
1691683125.4174297-UTR-L-elsbetiae_contig1988:15878..159061691683125.4174297-UTR-L-elsbetiae_contig1988:15878..15906Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1988 15879..15906 -
1622815822.2930527-UTR-L-elsbetiae_contig1988:16387..164481622815822.2930527-UTR-L-elsbetiae_contig1988:16387..16448Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1988 16388..16448 -
1691683125.4259624-UTR-L-elsbetiae_contig1988:16387..164481691683125.4259624-UTR-L-elsbetiae_contig1988:16387..16448Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1988 16388..16448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1988.5950.1

>prot_L-elsbetiae_contig1988.5950.1 ID=prot_L-elsbetiae_contig1988.5950.1|Name=mRNA_L-elsbetiae_contig1988.5950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MPSFCTQAGCTKQRVYGMDGSKPESCSAHKKDGMVNVKTKRCSQQGCVKH
PSYGVDGSSKSEFCFQHKKDGMVNVVRKRCGQQGCTTQSSYGVDGGSKAN
FCSTHKKDGMVNVVNKRCSQRGCTKFASFGVGGSSKQEFCCAHKKDGM
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mRNA from alignment at L-elsbetiae_contig1988:15435..16448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1988.5950.1 ID=mRNA_L-elsbetiae_contig1988.5950.1|Name=mRNA_L-elsbetiae_contig1988.5950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig1988:15435..16448- (Laminarionema elsbetiae ELsaHSoW15)
GTCGAAAGCTCAACAAGGGAGGAGTAATCCAACGGCTAAACTCGAAAGCT
GGGTAGCAGAGGTGCGTGAGAAATGATGTGGACTGAAAAATTGGTGTTAT
CTTGACGCTGGCCACTAATTCCGCCATCGTAGAGTGCGATCGTGCAGGCA
ATCTTCGTCGCACTGCATGATGACATTTCCATTGCAATGTGGGTCGGCCC
GGCCAGTGCGCAGGGGGGAGCGCCGCAGGATTTTTCAACCCTCCTCGAAA
GCCCCCACGAGCTCCATCCGCCGCAGCCGACCAAACCTAATTTTTTACTT
CTCCCCCCCGGCCGACCCAACCGCCCTCCACCAACACCGCACGGTTCTAT
TTCCACCTCTACCAACAGAAACGGTGATCTATTGCTGTAGCTTTGTCGCA
AAAAGACGGCGCGGAAAAAGTGCGGCGGAACTGGTATGGTATGTCGGTTG
TAGGGCACAGCAGAGGTATGTAGCTCAGGTATATAGCAGCGGGAAGAGTG
GAGAAGAACCATCTCACCCCTCGCCTTGTCTCTTTACGGCAGGCAGGAGT
GGTCGAGAAGGCCAGGAAGGATGCCGAGTTTCTGTACCCAAGCTGGTTGC
ACGAAGCAGCGGGTGTATGGCATGGATGGAAGCAAGCCGGAGTCCTGCTC
TGCACACAAGAAGGACGGGATGGTGAACGTTAAAACCAAGAGGTGCAGCC
AACAAGGTTGCGTCAAGCACCCGTCATATGGCGTGGATGGTAGCAGCAAG
TCAGAGTTCTGCTTTCAGCACAAGAAGGATGGGATGGTGAACGTCGTCCG
CAAGAGGTGCGGCCAACAAGGTTGCACCACGCAGTCGTCATATGGCGTGG
ACGGTGGCAGTAAGGCGAATTTCTGCTCTACACACAAGAAGGACGGGATG
GTGAACGTTGTCAACAAGAGGTGCAGCCAACGAGGTTGCACCAAGTTTGC
GTCGTTCGGGGTTGGTGGTAGCAGCAAGCAGGAGTTCTGCTGTGCACATA
AGAAGGACGGGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1988:15435..16448-

>mRNA_L-elsbetiae_contig1988.5950.1 ID=mRNA_L-elsbetiae_contig1988.5950.1|Name=mRNA_L-elsbetiae_contig1988.5950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig1988:15435..16448- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAGTTTCTGTACCCAAGCTGGTTGCACGAAGCAGCGGGTGTATGG
CATGGATGGAAGCAAGCCGGAGTCCTGCTCTGCACACAAGAAGGACGGGA
TGGTGAACGTTAAAACCAAGAGGTGCAGCCAACAAGGTTGCGTCAAGCAC
CCGTCATATGGCGTGGATGGTAGCAGCAAGTCAGAGTTCTGCTTTCAGCA
CAAGAAGGATGGGATGGTGAACGTCGTCCGCAAGAGGTGCGGCCAACAAG
GTTGCACCACGCAGTCGTCATATGGCGTGGACGGTGGCAGTAAGGCGAAT
TTCTGCTCTACACACAAGAAGGACGGGATGGTGAACGTTGTCAACAAGAG
GTGCAGCCAACGAGGTTGCACCAAGTTTGCGTCGTTCGGGGTTGGTGGTA
GCAGCAAGCAGGAGTTCTGCTGTGCACATAAGAAGGACGGGATGATGCCG
AGTTTCTGTACCCAAGCTGGTTGCACGAAGCAGCGGGTGTATGGCATGGA
TGGAAGCAAGCCGGAGTCCTGCTCTGCACACAAGAAGGACGGGATGGTGA
ACGTTAAAACCAAGAGGTGCAGCCAACAAGGTTGCGTCAAGCACCCGTCA
TATGGCGTGGATGGTAGCAGCAAGTCAGAGTTCTGCTTTCAGCACAAGAA
GGATGGGATGGTGAACGTCGTCCGCAAGAGGTGCGGCCAACAAGGTTGCA
CCACGCAGTCGTCATATGGCGTGGACGGTGGCAGTAAGGCGAATTTCTGC
TCTACACACAAGAAGGACGGGATGGTGAACGTTGTCAACAAGAGGTGCAG
CCAACGAGGTTGCACCAAGTTTGCGTCGTTCGGGGTTGGTGGTAGCAGCA
AGCAGGAGTTCTGCTGTGCACATAAGAAGGACGGGATG
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