mRNA_L-elsbetiae_contig1986.5943.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1986.5943.1
Unique NamemRNA_L-elsbetiae_contig1986.5943.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1986.5943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1986contigL-elsbetiae_contig1986:7846..8770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size437
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815821.7761042-CDS-L-elsbetiae_contig1986:7845..79361622815821.7761042-CDS-L-elsbetiae_contig1986:7845..7936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1986 7846..7936 +
1691683125.103698-CDS-L-elsbetiae_contig1986:7845..79361691683125.103698-CDS-L-elsbetiae_contig1986:7845..7936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1986 7846..7936 +
1622815821.785534-CDS-L-elsbetiae_contig1986:8426..87701622815821.785534-CDS-L-elsbetiae_contig1986:8426..8770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1986 8427..8770 +
1691683125.123296-CDS-L-elsbetiae_contig1986:8426..87701691683125.123296-CDS-L-elsbetiae_contig1986:8426..8770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1986 8427..8770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1986.5943.1prot_L-elsbetiae_contig1986.5943.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1986 7846..8770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1986.5943.1

>prot_L-elsbetiae_contig1986.5943.1 ID=prot_L-elsbetiae_contig1986.5943.1|Name=mRNA_L-elsbetiae_contig1986.5943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
PHSRLRFRAAGGRTGNRTRGLKQGFPSAVSDLRLSEQSTIKTSSPMERER
SHRSTTTNTTTTIARFSWPPNMNAFYLTPGYSGLESSLCLDGFDPALWSG
TLVTIQHHLSATTPQVPPLRRRKFGGTRSAEQQAPSGCSSRVSG*
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mRNA from alignment at L-elsbetiae_contig1986:7846..8770+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1986.5943.1 ID=mRNA_L-elsbetiae_contig1986.5943.1|Name=mRNA_L-elsbetiae_contig1986.5943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=925bp|location=Sequence derived from alignment at L-elsbetiae_contig1986:7846..8770+ (Laminarionema elsbetiae ELsaHSoW15)
CCACATTCCAGACTACGTTTCAGAGCCGCTGGTGGAAGAACAGGCAACAG
AACACGTGGACTCAAGCAAGGCTTCCCATCTGCGGTTAGCGGTGAGTACG
ATCAGGTTTAGTGCAATGCAAAAGCGCGGGTCGTTCTCCTCTCCTTCCCA
CAACTTGCAACGATCTGATACGCATGTACATCAACTGGTGCTACCTTTCC
AGAAGACGGATCTCCTCCCTTGATAGTTACCACCCAACCACTTCATTTGC
AGCATATCTTCCCCGGCCACATCCACGGTTGGGAGAGCCGTAAACCTCAT
GAACCCGTCCCAGAGGACAGGCAGGAGACGTCGTTGTTGAACTTCCGTGG
TTGGAAAAAAGCAGGAAATGATCTGCTTATCTTTCAAAGCAGCTGAAAAA
AAAACAGAGACTCGATGCATGCATTCTCGTCTACCAACCTGCTATGTACA
TACATAGTTGCATAATCGACGCGAAAGAAACCACCAAGGACAACCACTGA
TCACGTGCATGTGCAACCTCTTCGTGCGCTTTGCCTACGCCTGGTTCGCA
CCCCCTCGGCTTTTCCTCCAACCTCATAAAGATCTACGACTCTCGGAACA
GAGTACAATAAAAACTTCGTCACCCATGGAGCGCGAACGGAGCCACAGGA
GCACCACCACCAACACCACCACCACTATAGCCCGCTTCAGTTGGCCTCCT
AATATGAATGCCTTCTATCTCACGCCGGGTTACTCCGGACTGGAGTCAAG
CCTGTGCTTGGATGGTTTCGACCCGGCGCTTTGGTCCGGAACGTTGGTGA
CGATTCAGCATCATCTCAGCGCGACCACTCCACAAGTACCACCACTCCGC
CGCAGGAAATTCGGCGGCACCAGAAGCGCAGAGCAACAAGCGCCGAGCGG
ATGTAGTTCGAGGGTGAGTGGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1986:7846..8770+

>mRNA_L-elsbetiae_contig1986.5943.1 ID=mRNA_L-elsbetiae_contig1986.5943.1|Name=mRNA_L-elsbetiae_contig1986.5943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig1986:7846..8770+ (Laminarionema elsbetiae ELsaHSoW15)
CCACATTCCAGACTACGTTTCAGAGCCGCTGGTGGAAGAACAGGCAACAG
AACACGTGGACTCAAGCAAGGCTTCCCATCTGCGGTTAGCGCCACATTCC
AGACTACGTTTCAGAGCCGCTGGTGGAAGAACAGGCAACAGAACACGTGG
ACTCAAGCAAGGCTTCCCATCTGCGGTTAGCGATCTACGACTCTCGGAAC
AGAGTACAATAAAAACTTCGTCACCCATGGAGCGCGAACGGAGCCACAGG
AGCACCACCACCAACACCACCACCACTATAGCCCGCTTCAGTTGGCCTCC
TAATATGAATGCCTTCTATCTCACGCCGGGTTACTCCGGACTGGAGTCAA
GCCTGTGCTTGGATGGTTTCGACCCGGCGCTTTGGTCCGGAACGTTGGTG
ACGATTCAGCATCATCTCAGCGCGACCACTCCACAAGTACCACCACTCCG
CCGCAGGAAATTCGGCGGCACCAGAAGCGCAGAGCAACAAGCGCCGAGCG
GATGTAGTTCGAGGGTGAGTGGATGAATCTACGACTCTCGGAACAGAGTA
CAATAAAAACTTCGTCACCCATGGAGCGCGAACGGAGCCACAGGAGCACC
ACCACCAACACCACCACCACTATAGCCCGCTTCAGTTGGCCTCCTAATAT
GAATGCCTTCTATCTCACGCCGGGTTACTCCGGACTGGAGTCAAGCCTGT
GCTTGGATGGTTTCGACCCGGCGCTTTGGTCCGGAACGTTGGTGACGATT
CAGCATCATCTCAGCGCGACCACTCCACAAGTACCACCACTCCGCCGCAG
GAAATTCGGCGGCACCAGAAGCGCAGAGCAACAAGCGCCGAGCGGATGTA
GTTCGAGGGTGAGTGGATGA
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